BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337821
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56400.1 | Symbols: | F-box family protein | chr1:21111805-... 2045 0.0
> AT1G56400.1 | Symbols: | F-box family protein | chr1:21111805-21113621
REVERSE LENGTH=1440
Length=1440
Score = 2045 bits (1107), Expect = 0.0
Identities = 1337/1448 (92%), Gaps = 16/1448 (1%)
Strand=Plus/Plus
Query 1 ATGAC-TTCTAAGAGAATAGCTTCAAGTATCCAACTAGACGGCTTATCCAATCTACCGGA 59
||||| ||| ||||||||||||||||||||||||| |||| | |||||||||||||| ||
Sbjct 1 ATGACTTTC-AAGAGAATAGCTTCAAGTATCCAACAAGACAGATTATCCAATCTACCAGA 59
Query 60 TGTGATTCTGATTACGATCATTTCTTACTTGTCGTTTAAGGAATGTTTAAGGACCAGTGT 119
|||| ||||||||| ||| || |||| ||||||||||||||||||| |||||||||||||
Sbjct 60 TGTGCTTCTGATTATGATAATCTCTTGCTTGTCGTTTAAGGAATGTATAAGGACCAGTGT 119
Query 120 ACTCGCTAAGAGGTGGAGGTATCTCTGTCGGGAGACAAGAAACATTGCTTTTAAGGAATC 179
|||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||| |
Sbjct 120 ACTCGCTAAGAGGTGGAGGTATCTATGTCGGGAAACAAGAAACATTTCTTTTAAGGAAAC 179
Query 180 AGAGTATGTGGACCACTCTGTCTCCGACAAAATATCCAAAAGGATTTCGTTTG-TTCACT 238
||||| |||||||||| |||||||||||||| |||||||||| ||||||||| | | |
Sbjct 180 CGAGTACGTGGACCACTTTGTCTCCGACAAAAGATCCAAAAGGGTTTCGTTTGCTGC-TT 238
Query 239 ATATGCGTCAATGGATCTCTAGATATCATGGTCGTTACATCGAAACCCTCGAGATTAATT 298
||||| |||||||| ||||||||||||| ||||||||||| ||||||||||||||| |||
Sbjct 239 ATATGTGTCAATGGGTCTCTAGATATCACGGTCGTTACATTGAAACCCTCGAGATTTATT 298
Query 299 TCTCCATTCCTTCGGGTTTTGTTGCGGAGATCCAGTCCCTGATCGAATTCGCAGTCTCAA 358
|||||||||| |||| |||| | || | | || |||| |||||||||||||| |||||||
Sbjct 299 TCTCCATTCCATCGGATTTTCTGGCAGCGGTCGAGTCACTGATCGAATTCGCGGTCTCAA 358
Query 359 GACAAGTCAAGAACCTAGTTCTTGATTTCAAAGACCCTTCTTGGATAAGCACTAGCTGGG 418
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 359 GACAAGTCAAGAACCTAGTTCTTGATTTCTCGGACCCTTCTTGGATAAGCACTAGCTGTG 418
Query 419 CGTCGAGGTATGACCATG-TTGTTGTGCAATTGCCCGTATGCGTTTACAGTCTAACAACC 477
|||||||||||||| ||| ||| |||||||||||| ||||||||||| ||||||||||||
Sbjct 419 CGTCGAGGTATGACTATGTTTG-TGTGCAATTGCCTGTATGCGTTTATAGTCTAACAACC 477
Query 478 CTTGAATCACTGAAGATTTACTCGTGCGGGTTTGACCCCTCTAAATTCTCAAACTCGAGA 537
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 478 CTTGAATCACTGAAGATTTACTCGTGCGGGTTTGACCCCTCGAAATTCTCAAACTCGAGA 537
Query 538 TTGCCTAGAAAGCTCTCTATTGGTTGGATCAAACTCCCAGAGGTTGATTCTTTGTTATCA 597
|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||| |
Sbjct 538 TTGCCTAGAAAGCTCTCTATTGGTTGGATCAAACTCACAGACGTTGAGTCTTTGTTATTA 597
Query 598 AACTCTCCTACACTCAAGAGTCTAAGTCTTGATTACTGCTGGGGTGTTGAAATCAAAAAC 657
|||||||| |||||||||||||||||| || ||||||| |||||| |||||||| ||||
Sbjct 598 AACTCTCCAACACTCAAGAGTCTAAGTATTAATTACTGTTGGGGTATTGAAATCCGAAAC 657
Query 658 ATAGCCGGAGATATGAAAGAATTTGTATTTGACAGATGTGACTTCTCCTCTTTCATGGCT 717
|||||||||||||||||||||||||||||||| || || ||||||||||||||||||| |
Sbjct 658 ATAGCCGGAGATATGAAAGAATTTGTATTTGAGAGCTGCGACTTCTCCTCTTTCATGGTT 717
Query 718 TGTTCCTTTGACCTCCCTAATGTAGAAATCTTCAAGTACTCAGGCCAGATTCTTTCCTTT 777
|||| ||||||||||||||||||||| ||||| || ||||| ||||| ||||| ||||||
Sbjct 718 TGTTGCTTTGACCTCCCTAATGTAGAGATCTTTAAATACTCTGGCCAAATTCTGTCCTTT 777
Query 778 GATGTCAAGAGAATGAATATGAGCATCAAAGACGTTTA-CTTGGATTTCACGGCAGAGGG 836
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 778 GATGTCAAGAGAATGAATATGAGCATCAAAGACG-TTATCTTGGATTTCACGGCAGAGGG 836
Query 837 CGAGTATGACA-AACGGAATCAAAGAACCAAATTAGAAGGATCAGTTCTTTCTGCCTTCC 895
| |||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 837 CTTGTATGA-AGATCGGAATCAAAGAACCAAATTAGAAGGATCAGTTCTCTCTGCCTTCC 895
Query 896 TTAACAATCTTCGAGGTGCGAGGACCTTAAGTGTCTGCCCTTATCTCCTTCAGACTATCC 955
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTAACAATCTTAGAGGTGCGAGGACCTTAAGTGTCTGCCCTTATCTCCTTCAGACTATCC 955
Query 956 AAGAATGTGAAGATCCGCTT-GATTTGCTTCGTCCGATGGAAACGCAACACTTGGTGCTG 1014
|||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 956 AAGAATGTGAAGATCC-ATTCGATTTGCTTCGTCCGATGGAAACACAACACTTGGTGCTG 1014
Query 1015 AGAACGAGGTTGCATGTCACAGAATTTAAGGGAATTAGGCTCCTCCTCGATAATTGCCCT 1074
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1015 AGAACGAGGTTGCATGTCATGGAATTTAAGGGAATTAAGCTCCTCCTCGATAATTGCCCT 1074
Query 1075 AACCTGGAAATGTTAACTTTCGATATTTTCAATCGAAG-CATTTTCTCGTACAATAAGTC 1133
||||| |||| ||||||||||||||| |||| |||||| | |||||||||||||||||||
Sbjct 1075 AACCTAGAAACGTTAACTTTCGATATCTTCAGTCGAAGTC-TTTTCTCGTACAATAAGTC 1133
Query 1134 ATATTATGGCGTCGGTCCACGGTCATATTGGAAAAAGAACCTTACCTATAAGTCTCTTCC 1193
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 1134 ATATTATGGCGTCGGTCCACGATCATATTGGAAAAAAAACCTTACTTATAAGTCTCTTCC 1193
Query 1194 TAAGACACTTAAGGTCGTGGTCGTGAGAAACTTC-CGTGGTCGCTTTGGCGAGCTAAATG 1252
||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 1194 TAAGACACTTAAGGTCGTGGTCGTGAGGAACTTCAC-TGGTCGCTTTGGCGAGCTAAATG 1252
Query 1253 TTTTGAAGTTTTTGATTCAGTCGGGACGTGGGCGTTGGCCTGGACGCGAGCATGGGCCTA 1312
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1253 TTTTGAAGTTTTTGATTCAGTCGGGACGTGGGCGTTGGCCTGGACGGGAGCATGGGCCTA 1312
Query 1313 TGCTGGAAAGAGTGGAGCTTTACATGCATAGTAGTATGGCGGAAAGTCAAAAGGAGTTGG 1372
|||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||
Sbjct 1313 TGCTGGAAAGAGTGGAGCTTTACATGGATAGTAGTATGGCAGAAAGTCAAAAAGAGTTGG 1372
Query 1373 CAGATGATGGAGCCGCGATGTTACAAAGTATTTCAGGGCATGTACAGATTATTGTACATG 1432
|||||||||||||| ||||||||| |||||||||||| |||||||| || ||||| |||
Sbjct 1373 CAGATGATGGAGCCATGATGTTACAGAGTATTTCAGGGGATGTACAGGTTCTTGTATATG 1432
Query 1433 ATCCTTGA 1440
||||||||
Sbjct 1433 ATCCTTGA 1440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70983570630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5