BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337885
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60180.1 | Symbols: | pseudogene of F-box family protein | ... 416 2e-115
AT3G18150.1 | Symbols: | RNI-like superfamily protein | chr3:6... 363 3e-99
> AT1G60180.1 | Symbols: | pseudogene of F-box family protein
| chr1:22195525-22196685 REVERSE LENGTH=891
Length=891
Score = 416 bits (225), Expect = 2e-115
Identities = 594/766 (78%), Gaps = 50/766 (7%)
Strand=Plus/Plus
Query 515 TTAAGGTTCTTGATCTCAGCAAATTGTTGCACTTGAGAACATTAGAAATAAACAGCCACA 574
||| |||||||||||| ||||||| | ||| ||||||||||||||||||| | || |||
Sbjct 143 TTACGGTTCTTGATCTTAGCAAATCGCTGCGCTTGAGAACATTAGAAATAGCCTGCAACA 202
Query 575 TT-A-AGTTTCTAGGGCCAACGCAGATTGTTGCACCACATATCCATTGTCTTAGATTGAT 632
|| | | | | | |||||| ||||||||| ||||| ||||||||| |||| ||| |||
Sbjct 203 TTGACA-ATACGA-GGCCAAGGCAGATTGTGGCACCGCATATCCATCGTCTCAGACTGAA 260
Query 633 AGCCTCTCAATTACCATGTACTTTAGTTGATATCTCGTCTTTA-ACCGAAGCGAAACTGG 691
| ||| ||| | ||||||| ||||||||||| ||||||||||| | ||||| || |||
Sbjct 261 AACCTATCAGTCACCATGTGCTTTAGTTGATGTCTCGTCTTTAGA-TGAAGCTCAAGTGG 319
Query 692 ACAT-TTGT-ATTAAATCAAGAGAT-GAGATCTTCAAGGCTGATTTTCCTCAACTTCAAG 748
|| | || | ||| | || | | | ||| | || | ||| | || | ||||||||
Sbjct 320 AC-TGTT-TCATTTACTC-ACATCTAAAGACCCTCGACGCT--TATT--T--ACTTCAAG 370
Query 749 CCATGGTGC-TAGAGATGCTGGAAAAACTACAGAATGTTGAGAAGCTAACTTTT-GGTGG 806
||| | | || | ||||| || || | ||||||| |||||||| | |||| ||| |
Sbjct 371 ACAT--T-CTTA-AAATGCTAGAGAAGTTGCAGAATGCAGAGAAGCTTATTTTTGGGT-G 425
Query 807 AAACTTTCTTCAGATTTTATCTCTTGCTG-GTGTTCGTGGTGTTCCTTTTCCGATGTTAA 865
||| |||||||||||||||||||||| | | ||| | ||| ||||||| |||||||| |
Sbjct 426 CAACATTCTTCAGATTTTATCTCTTGCCGAG-GTTTGCGGTCTTCCTTTCCCGATGTTCA 484
Query 866 AGGTCAAAA-CTTTGATTCTTGAAAC-GGTAATCTTTCAGTATGTTATTCCTGGTATAGA 923
| | ||||| |||||| |||||| || | | |||||||||||||||||||||||||||||
Sbjct 485 A-GACAAAAGCTTTGACTCTTGAGACAGAT-ATCTTTCAGTATGTTATTCCTGGTATAGA 542
Query 924 AAGA-TTGTTACAAAACTCATTTGAATTAAAGAAGCTAATGGTACGAGCAAGGGATTGCA 982
|||| || |||||||||||| ||| ||||||| | | | || || |||| ||| |||
Sbjct 543 AAGACTT-TTACAAAACTCACCTGATTTAAAGACGGTGACAGTTCGTCCAAGTGATGGCA 601
Query 983 ACACCATACCGGGGAGTTACTT-GACAAATTACTTGGACTCACTAGGCTTGGATCCAAA- 1040
||| ||| ||||| || | || ||||| | ||||||||| | ||||||| |||| ||
Sbjct 602 ACATCATGCCGGGTAGGTGTTTTGACAACT-ACTTGGACTTGCAAGGCTTGAATCCGAAT 660
Query 1041 CATATGTTGGAGATCGAAAGATGGGAAGGTCATTTTG-AACAAATCCCAT-CGGAATATA 1098
|| |||||||||||| ||||||||| | || ||||| || ||||||| | || ||| ||
Sbjct 661 CA-ATGTTGGAGATCAAAAGATGGG--G-TC-TTTTGGAATAAATCCCGTTCG-AATTTA 714
Query 1099 GAGACAAAGC-ATGTTACTTCGTTCATAGAATTTACGCTTAAAAACACAAAGAGCTTAGA 1157
| | ||||| | || |||| ||| | ||| ||| ||||||||||||||||| |||||
Sbjct 715 GGGTCAAAGAGA-GTGACTTTATTCGTGGAACTTATGCTTAAAAACACAAAGATATTAGA 773
Query 1158 TAAGATGGTCGTACAGTTGGACGAACGTTACATTAGTTTTAGGTTTAAAGACTTGGTACC 1217
||||||||||| ||||| |||||| |||| |||| | || ||| ||||| || || ||
Sbjct 774 CAAGATGGTCGTTCAGTTAAACGAACATTACCTTAGGTCTAAGTTAAAAGAGTTTGTTCC 833
Query 1218 AACACTTATTCCCA-AC-AATAATGTCTCCATTGGGCTCTCAACCA 1261
|||| || ||| || | |||||||||| |||| |||||||||||
Sbjct 834 AACA-TT-TTCTCAGAAGAATAATGTCTTGATTGTGCTCTCAACCA 877
> AT3G18150.1 | Symbols: | RNI-like superfamily protein | chr3:6217929-6219500
FORWARD LENGTH=1371
Length=1371
Score = 363 bits (196), Expect = 3e-99
Identities = 593/777 (76%), Gaps = 57/777 (7%)
Strand=Plus/Plus
Query 516 TAA-GGTTCTTGATCTCAGCAAATTGTTGCACTTGAGAACATTAGAAATAAACAGCCACA 574
||| |||||||||||||||||||| ||| | |||||||||||||||||||| | |||
Sbjct 617 TAAGGGTTCTTGATCTCAGCAAATCACTGCGCCTGAGAACATTAGAAATAAACTGTAACA 676
Query 575 -TTAAGTT-----TCT-AGGGCCAACGCAGATTGTTGCACCACATATCCATTGTCTTAGA 627
|| ||| || | || ||| ||||||||| || ||||||| ||||||||| |||
Sbjct 677 TTTGGGTTCCCGAGCTAACGG-CAATGCAGATTGTGGCTCCACATACCCATTGTCTCAGA 735
Query 628 TTGATAGCCTCTCAATTACCATGTACT-TTAGTTGATATCTCGTC-TTTAACCGAAGCGA 685
|||| | |||| |||||||||||| | || |||||| |||| || | || ||||| |
Sbjct 736 TTGAGAAACTCTAAATTACCATGTAGTCTT-GTTGATGTCTCATCACTGAA-GGAAGCTA 793
Query 686 AACTGGACATTTGTATTAAATCAAGAGATGAGATCTTCAAGGCTGATTTTCCTCAACTTC 745
|||| ||||||| ||| | ||| | | | | |||||||||| |||| |||| ||
Sbjct 794 AACTTAACATTTGCATTGACTCATTTTCTAAAACCATCAAGGCTGACTTTCTTCAA-GTC 852
Query 746 AAGCCATGGTGCTAGAGATGCTGGAAAAACTACAGAATGTTGAGAAGCTAACTTTTGGTG 805
| | | | || || ||||| ||||||| | || || || |||||||| ||||| ||||
Sbjct 853 ACG-C-T-GT--TAAAGATGTTGGAAAAGTTGCACAACGTGGAGAAGCTTACTTTGGGTG 907
Query 806 GAAACTTTCTTCAGATTTTATCTC-TTGCTGGTG-TTCGTGGTGTTCCTTTTCCGATGTT 863
|||||||||||||||||||||| | |||| | | |||||||||| ||||| ||||||||
Sbjct 908 GAAACTTTCTTCAGATTTTATC-CGTTGC-CGAGCTTCGTGGTGTCCCTTTCCCGATGTT 965
Query 864 AAAGGTCAAA-ACTTTGATTCTTGAAACGGTAATCTTTCAGTATGTTATTCCTGGTATAG 922
||||| ||| | ||||| ||| || || || ||||||||||||||||||||||||||||
Sbjct 966 CAAGGTGAAAGA-TTTGACTCTCGAGACAGTCATCTTTCAGTATGTTATTCCTGGTATAG 1024
Query 923 AAAGATTGTTACAAAACTCATTTGAATTAAAGAAGCTAATGGTACG-AGCAAGGGATTGC 981
||||| |||||||||||||| ||| ||||||||||||| ||| | ||| ||||| |
Sbjct 1025 AAAGAGTGTTACAAAACTCACCTGATTTAAAGAAGCTAACATTACTCA-CAAAGGATTTC 1083
Query 982 AACACCATA--CCGGG-GAGT-TACTTGACAAATTACTTGGACTCACTAGGCTTGGATC- 1036
|| | ||| ||||| |||| | |||| | | || |||| | |||||| |||
Sbjct 1084 TAC-C-ATAAACCGGGTGAGTAT-CTTGGCGACC-ACATGGATTTGGAAGGCTTTAATCT 1139
Query 1037 CAAACATATGTTGGAGATCGAAAGATGGGAAGGTCATTTTG-AACAAATCCCATC-GGAA 1094
| | || |||||||| ||| ||| |||| | || ||||| ||||| || | |||
Sbjct 1140 CGATCA-ATGTTGGAAATCAAAATATGGT--G-TC-TTTTGGAACAAGTCATGTTTGGA- 1193
Query 1095 TATAGAGACAAAGCATGTTACTTCGTTCATAGAATTTACGCTTAAAAACACAAAGAGC-T 1153
| ||||| || |||| ||| ||| ||| | ||| ||| |||||||||||||||| || |
Sbjct 1194 TGTAGAGTCAGAGCACGTTGTTTCATTCGTGGAACTTATGCTTAAAAACACAAAG-GCAT 1252
Query 1154 TAGATAAGATGGTCGTACAGTTGGACGAACGTTACATTAGTTTTAGGTTTAAAGACTTGG 1213
|||| ||||||||||||| |||||| || | |||| ||| ||||||||||| |||
Sbjct 1253 TAGACAAGATGGTCGTACTGTTGGAAGACCATTAC----GTT--AGGTTTAAAGAGATGG 1306
Query 1214 TACCAACACTTAT-TCCCAACAATAATGTCTCCATTGGGCTCT-CAAC--CAAGCCG 1266
| |||| |||| | || |||| ||||| ||||||||| |||| || | |||||||
Sbjct 1307 TTCCAAGACTT-TCTCACAACTATAATATCTCCATTGCCCTCTACACCTTCAAGCCG 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5