BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337905
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64710.1 | Symbols: | GroES-like zinc-binding dehydrogenase... 806 0.0
> AT1G64710.1 | Symbols: | GroES-like zinc-binding dehydrogenase
family protein | chr1:24044545-24046552 FORWARD LENGTH=1523
Length=1523
Score = 806 bits (436), Expect = 0.0
Identities = 482/505 (95%), Gaps = 0/505 (0%)
Strand=Plus/Plus
Query 421 GTGGCTGAAGGTGCAAGAGTCAGGGGAGCCTCTAAAATCATTGGGATCGACGTCAACCCT 480
||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct 778 GTGGCTGAAGGTGCAAGAGCCAGAGGAGCCTCTAAAATCATTGGGATCGACATCAACCCT 837
Query 481 GACAAGTTCCCATTAGGCAGAGAAGCAGGGATCAGTGAATTCATAAATCCAAAGGAGAGT 540
|||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 838 GACAAGTTCCAACTAGGCAGAGAAGCAGGGATTAGTGAATTCATAAATCCAAAGGAGAGT 897
Query 541 GACAAGGCAGTTCATGAGAGAGTAAGGGAGATAACAGAGGGAGGAGTGGAGTGCAGCTTT 600
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 898 GACAAGGCAGTTCATGAGAGAGTAATGGAGATAACAGAGGGAGGAGTGGAGTACAGCTTC 957
Query 601 GAGTGTGCGGGAAGCATAGAAGCACTTAGAGAAGCCTTTCTGTCTACTAACTCAGGAGTG 660
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 958 GAGTGTGCAGGAAGTATAGAAGCACTTAGAGAAGCCTTTCTGTCTACAAACTCAGGAGTG 1017
Query 661 GGAGTGACAGTGTTGCTGGGCGTTCACGCAAGCCCACAACTTCTTCCTATCCATCCCATG 720
|||||||| || ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1018 GGAGTGACTGTCATGCTGGGCGTTCACGCAAGCCCACAGCTTCTCCCTATCCATCCCATG 1077
Query 721 GAGCTCTTCCAAGGCAGATCCATCACCGCCTCTGTTTTCGGAGGCTTCAAACCCAAAACC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GAGCTCTTCCAAGGCAGATCCATCACCGCCTCTGTTTTCGGAGGCTTCAAACCCAAAACC 1137
Query 781 CAATTACCCTTTCTCATCACCCAATGCCTCCAAGGTCTTCTCAATCTCGATCTCTTCATC 840
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1138 CAATTACCCTTTTTCATCACCCAGTGCCTCCAAGGTCTTCTCAATCTCGATCTCTTCATC 1197
Query 841 TCTCACCAGCTTCCATTCCACGATATCAACAAAGCCATGCAGCTGCTTCACCAAGGCAAA 900
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1198 TCTCACCAGCTTCCCTTCCACGATATCAACGAAGCCATGCAGCTGCTTCACCAAGGCAAA 1257
Query 901 GCTATTCGTTGCCTTCTCCGCCTCT 925
||| ||||||||||||||| |||||
Sbjct 1258 GCTCTTCGTTGCCTTCTCCACCTCT 1282
Score = 616 bits (333), Expect = 2e-175
Identities = 365/381 (96%), Gaps = 0/381 (0%)
Strand=Plus/Plus
Query 1 ATGAAGGCAGGAGATCATGTGCTCCCTATTTTCACAGGAGAGTGTGGAGATTGCAGAGTC 60
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 397 ATGATGGCAGGAGATCATGTGCTCCCTATTTTCACAGGAGAGTGTGGAGACTGCAGAGTG 456
Query 61 TGCAAGCAAGACGAAGCCAATCTGTGCGAGAGATTCCGAGTAGATCCGATGAAGAAGGTG 120
||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 457 TGCAAGCGAGACGGAGCCAATCTGTGCGAGAGATTCCGAGTGGATCCGATGAAGAAGGTG 516
Query 121 ATGGTAATTGATGGAAAGACCAAATTCTTCACAAGCAAAGACAACAAACCCATCTACCAT 180
||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||
Sbjct 517 ATGGTAACCGATGGAAAGACCAGATTCTTCACCAGCAAAGACAACAAACCAATCTACCAT 576
Query 181 TTTCTCAACACATCCACCTTCTCCGAGTACACGGTCATAGACTCGGCTTGCGTGCTCAAG 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 577 TTTCTCAACACATCCACCTTCTCCGAGTACACGGTCATAGACTCGGCCTGCGTGCTCAAG 636
Query 241 GTGAACCCTCTGTTTCCTCTGGAGATGATAAGCCTCCTCAGCTGCGGTGTCTCCACTGGA 300
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 637 GTGGACCCTCTGTTTCCTCTGGAGAAGATAAGCCTCCTCAGCTGCGGTGTCTCCACTGGA 696
Query 301 GTCGGTGCGGCGTGGAATGTGGCTGATATTCAACCTGGCTCCACCGTCGCTATATTTGGA 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 697 GTCGGTGCGGCGTGGAATGTGGCTGATATTCAACCTGCCTCCACCGTCGCTATTTTTGGA 756
Query 361 CTTGGCGCTGTTGGACTTGCC 381
|||||||||||||||||||||
Sbjct 757 CTTGGCGCTGTTGGACTTGCC 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5