BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337911
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64670.1 | Symbols: BDG1 | alpha/beta-Hydrolases superfamily... 909 0.0
AT5G41900.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 172 3e-42
> AT1G64670.1 | Symbols: BDG1 | alpha/beta-Hydrolases superfamily
protein | chr1:24030820-24033556 REVERSE LENGTH=1662
Length=1662
Score = 909 bits (492), Expect = 0.0
Identities = 532/552 (96%), Gaps = 0/552 (0%)
Strand=Plus/Plus
Query 8 CCACAAGACTCAAACTCCACAGCATGGGATTCTCACGGTGGCTCAACCGCACCGTGGGCT 67
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 60 CCACAAGACTCAAACTCCACAGCATGGGATTCTCACGGTCGCTCAACCGCACCGTGGGCG 119
Query 68 TCTTCGTCTTCTTCATCCTCGACATTGTGGATTTCTTGCTTTGCTTTACCTACAAGACTC 127
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 120 TCTTCGTCTTCTTCATCCTCGACATTGTTGATTTCCTGCTTTGCTTTACCTACAAGACTC 179
Query 128 TTGATTTCTTCTTCGAGTCAGAGTGGAAACCCTGCTACTGCTGTCCGCCGCCTGAGGCCA 187
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 180 TTGATTTCTTCTTCGAGTCCGAGTGGAAACCCTGCTACTGCTGTCCGCCGCCCGAGGCCA 239
Query 188 AACCAATCGCGGCTGGAGGGAGCAGAGTCGGTAAGATGATAGTGTCGGAAAGATCAGGAG 247
|||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 240 AACCAATCTCGGCTGGAGGGAACAGAGGCGGTAAGATGATAGTGTCGGAAAGATCAGGAG 299
Query 248 AGTACTCGAAGGTAGTCTCACTCACAAGGACAAAGATCCATCTGGATGAGATCTCTGACA 307
| ||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 300 ACTACTCGAAGGTGGTCTCACTCACAAGGACAAAGATCTATCTGGATGAGATCTCCGACA 359
Query 308 CACTCTACTCACGCCCTTCACTCCTCACCAGGCTCACTAAGCTGGTGAAGTGCTTCAAGA 367
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 CACTCTACTCTCGCCCTTCACTCCTCACCAAGCTCACTAAGCTGGTGAAGTGCTTCAAGA 419
Query 368 AAGATGTTGTGAAATGTTGTGATGAGTCCAAGAAGAGATCACCGTCAACTAAAAAGACAT 427
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGATGTTGTTAAATGCTGTGATGAGTCCAAGAAGAGATCACCGTCAACTAAAAAGACAT 479
Query 428 TACTCACTGTGAACTCCACGGTGGTCGAGAAGTTGCGAAGAACACCAAGATGGTCTGATT 487
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 TACTCACTGTCAACTCCACGGTGGTCGAGAAGTTGCAAAGAACACCAAGATGGTCTGATT 539
Query 488 GCCATTGCACTTTCTGCACTTCTTGGCTTTCCTCTTCCAACCATTCTCTCTTTGTCAATG 547
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 540 GCCATTGCACTTTCTGCACTTCTTGGCTTTCCTCTTCCAACCAATCTCTCTTTGTCAATG 599
Query 548 TCCAACAGCCCA 559
||||||||||||
Sbjct 600 TCCAACAGCCCA 611
> AT5G41900.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:16768953-16771696 FORWARD LENGTH=1624
Length=1624
Score = 172 bits (93), Expect = 3e-42
Identities = 263/339 (78%), Gaps = 36/339 (11%)
Strand=Plus/Plus
Query 26 ACAGCATGGG-ATTCTCACGGTGGCTCAACCGCACCGTGGGCTTCTTCGTCTTCT-TCAT 83
||| |||||| ||| ||||||||||||||||||||||||||||||| |||||| || |
Sbjct 75 ACATCATGGGCATT-GCACGGTGGCTCAACCGCACCGTGGGCTTCTTTGTCTTCGCTC-T 132
Query 84 CCTCGACATTG-TGGATTTCTTGCTTTGCTTTAC-CT-ACAAGACTCTTG-ATTTCTTCT 139
||||||||||| || ||||||||||||| || || || |||||||| ||| ||| |||||
Sbjct 133 CCTCGACATTGCTG-ATTTCTTGCTTTG-TT-ACACTTACAAGACT-TTGGATTACTTCT 188
Query 140 TCGAGTCAGAGTGGAAACCCTGCTACTGCTGTCCGCCGCCTGAGGCCAAACCAATCGCGG 199
| || || ||| ||||||| |||||||||| | | || || ||||| ||| ||
Sbjct 189 TGGAATCCGAGAGGAAACCTTGCTACTGCTCTTCTCCACCAGAGGCTAAA------GC-- 240
Query 200 CTGGAGGGAGCAGAGTCGGTAAGATGATAGTGTCGGAAAGATCAGGAGAGTACTCGAAGG 259
| || | | ||| ||||| |||||||||||| || || | |||||| ||||
Sbjct 241 CA--AG--ACC-GAG-----AAGATCATAGTGTCGGAACGA---GGCGGGTACTCAAAGG 287
Query 260 TAGTCTCACTCACAAGGACAAAGATCCATCTGGATGAGATCTCTGACACACTCTACTCAC 319
| || || || ||||| | ||||||||| | ||||||||||| ||||| || |||||||
Sbjct 288 TTGTGTCTCTAACAAGAAGTAAGATCCATTTCGATGAGATCTCGGACACGCTTTACTCAC 347
Query 320 G---CCCTTCACTCCTCACCAGGCTCACTAAGCTGGTGA 355
| ||||||||| || || |||||| ||||||| ||||
Sbjct 348 GTGGCCCTTCACTTCTAACGAGGCTCTCTAAGCTCGTGA 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5