BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337954
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64295.1 | Symbols: | F-box associated ubiquitination effec... 1452 0.0
AT1G64290.1 | Symbols: | F-box protein-related | chr1:23857178... 959 0.0
AT2G05360.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 691 0.0
> AT1G64295.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:23859554-23860624 REVERSE LENGTH=1071
Length=1071
Score = 1452 bits (786), Expect = 0.0
Identities = 988/1084 (91%), Gaps = 19/1084 (2%)
Strand=Plus/Plus
Query 1 ATGAGTTCTCCGGTGCTAAATCAAGACATAATCCAAGAGGTTCTTTCTTAT-TTCCCGGC 59
||||||||||||||| ||||||| |||| ||||||||||||||||||||| || | ||
Sbjct 1 ATGAGTTCTCCGGTGATAAATCAGGACACGATCCAAGAGGTTCTTTCTTATCTT-CGGGG 59
Query 60 TTCAAAAATTGGAAAATTCAGGCTCCTGAATAAAGAGTGCAACAAGAGAAGCTACGAGTC 119
|| |||| |||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 60 GTCCGAAATCGGAAAATTGAGGCTCATCAATAAAGAGTGCAACAAGAGAAGCTACGAGTC 119
Query 120 ATGGTTTCTCAATCTCAATTTCCATAGAACCAACTATATCTCCGGATACTTCCTAGAACG 179
|||||| |||| || ||| ||||| |||||||| ||||||| |||||||||||||||||
Sbjct 120 TTGGTTTGTCAACCTAAATCTCCATCGAACCAACAATATCTCTGGATACTTCCTAGAACG 179
Query 180 CTACGAACGAGGATACAAACTTGATACCAGTTTTGTCCATGAGAGGAGAGATTTGGAAAA 239
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 180 CTACGAAAGAGGATACAAACTTGATACCAGTTTTTTCCATGAGAGGAGAGATTTGGATAA 239
Query 240 CAAAGGAGTCTCCATCGATTTTCTGCCACAGGGAGAGGGAAAGATTAAAGCTTGTGATGC 299
|||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 240 CAAAGGAGTCTCCATCGATTTTCTGCCACAAGGAGAGGTAAAGATCAAAGCTTGTGATGC 299
Query 300 AAGTCATGGAATATTGCTTTGTGT-TAATGATACAGGAATAATACCGGAATACATAGTCT 358
| ||||||| |||||||||||| | |||||||||| || ||||||||||||||||||||
Sbjct 300 ACGTCATGGGATATTGCTTTGT-TATAATGATACAAGACCAATACCGGAATACATAGTCT 358
Query 359 GCAAACCAACCACAAAACAGTATCAGATCATACCAAACCCAAAAGTGGGGAGATGTGATA 418
|||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 359 GCAAACCAACAACAAAACAGTATCAGATCATACCAAACCCAAAAGTGAGGAGTTGTGATA 418
Query 419 AGTCACTCGGTATAATGGTAACCGGATTGAACCCTTTCCGGTATAAAGTATTTAGGCTTT 478
||||| | ||| ||| ||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 419 AGTCATTAGGTCTAACGGTAACCGGATTGCAGCCTTTCCGGTATAAAATATTTAGGCTTT 478
Query 479 CGAAGTCGCCCGGTATGAATCGGAGTCTCAGAACTTTTGCGTGCGAAGTTTTTGATTCCG 538
|||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 479 CGAAATCGCCTGGTATGACTCGGAATCTCAGAACTTTTGCGTGCGAAGTTTTTGATTCCG 538
Query 539 ATTCGTTTATGTGGAAGAGGA-TAAAAAATCTGCGTCTACCAAGAACAGACGGTTTAATT 597
|||||||||||||||||| || |||||||| |||||||||| |||||||||||| |||||
Sbjct 539 ATTCGTTTATGTGGAAGA-GATTAAAAAATTTGCGTCTACCGAGAACAGACGGTCTAATT 597
Query 598 TTTTCAAACCCGGTACAAGCTTCGGGGTTCTTGAATTGGATATCACGGAACAACAACGTG 657
|||||||||||||||||||||| ||||||||| |||||| |||| ||||| |||| |||
Sbjct 598 CTTTCAAACCCGGTACAAGCTTCAGGGTTCTTGCATTGGAGATCATGGAACCACAATGTG 657
Query 658 ATCCGGTTATGTCTCAAAACCGAAACTTGGTCTTTCTTACATACCCCAAACGTTGGTATA 717
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 658 ATCCGGTTATGTCCCAAAACCGAAACTTGGTCTTTCTTACATACTCCAAACGTTGGTTTA 717
Query 718 TTCCCAGAGTTGGTCAGATACGAAGGGAAGCTAGGTGTTATTCGTCACTGGATAAACAAC 777
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTCCCAGAGTTAGTCAGCTACGAAGGGAAGCTAGGTGTTATTCGTCACTGGATAAACAAC 777
Query 778 AATCAAGAAGATGTTCACGGATTATGGGTTTTAAAGAGCAGTTTTGAGAAGTCGTGG-AT 836
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
Sbjct 778 AATCAAGAAGATGTTCACAGATTATGGGTTTTAAAGAGCAGTTTTGAAAAGTCGTGGGA- 836
Query 837 AAAAGTGAAAGATATTAAAAGCATTGGAGTAGATCACATTGTGTGGACT-CCAAGCAACG 895
|||||||||||||||| |||||||||||||||| || ||| ||||| | ||||||||||
Sbjct 837 AAAAGTGAAAGATATTGAAAGCATTGGAGTAGAGCATATTACGTGGA-TACCAAGCAACG 895
Query 896 ACGTCGTAATGCTTTCTAGTTGGGATCGTGTCTGCCTCTACAACATTAA-CACAGAAAAG 954
||||||||||||||||||||||||||| ||| |||||||||||| |||| |||||| |||
Sbjct 896 ACGTCGTAATGCTTTCTAGTTGGGATCATGTTTGCCTCTACAAC-TTAAACACAGAGAAG 954
Query 955 TTGAACTTAGTTCATACAAACAAAGATTTTGCCTCTTACGTTTGTTTCCCGTTTTGTTCT 1014
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 955 TTAAACTTAGTTCATACAAACAAGGATTTTGCCTCTTACGTTTGTTTCCCCTTTTGTTCT 1014
Query 1015 GATTACGAGAAGATTGATCTGGATTCTGGACGAAAGAAGAAATGGACCTACAAATGCAAA 1074
|||||||||| | |||||||||| | ||| | ||||||||||||| |||||||||||
Sbjct 1015 GATTACGAGAGGGTTGATCTGGA--C-GGA--A--GAAGAAATGGACCGACAAATGCAAA 1067
Query 1075 CTAG 1078
||||
Sbjct 1068 CTAG 1071
> AT1G64290.1 | Symbols: | F-box protein-related | chr1:23857178-23858488
REVERSE LENGTH=1311
Length=1311
Score = 959 bits (519), Expect = 0.0
Identities = 905/1082 (84%), Gaps = 64/1082 (6%)
Strand=Plus/Plus
Query 1 ATGAGTTCTCCGGTGCTAAATCAAGACATAATCCAAGAGGTTCTTTCTTAT-TTCCCGGC 59
||||||||||||||| ||||||||||||| |||||||| ||||||||||| || |||||
Sbjct 1 ATGAGTTCTCCGGTGATAAATCAAGACATGATCCAAGAATTTCTTTCTTATCTT-CCGGC 59
Query 60 TTCAAAAATTGGAAAATTCAGGCTCCTGAATAAAGAGTGCAACAAGAGAAGCTACGAGTC 119
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTCAAAAATCGGAAAATTCAGGCTCCTGAATAAAGAGTGCAACAAGAGAAGCTACGAGTC 119
Query 120 ATGGTTTCTCAATCTCAATTTCCATAGAACCAACT-ATATCTCCGGATACTTCCTAGAAC 178
||||||| ||||||| ||| ||| ||||||||| | ||| || ||||||||| || |||
Sbjct 120 ATGGTTTGTCAATCTTAATCTCCTTAGAACCAA-TCGTATTTCGGGATACTTCATACAAC 178
Query 179 GCTAC---G-AACGAGGATACAAACTT-GATACCAGTTTTGTCCATGAGAGGAGAGATTT 233
|||| | || |||| || ||||| || ||||||||||||||||||||||| |||||
Sbjct 179 ACTACATAGTAA-AAGGACACGAACTTCGA-ACCAGTTTTGTCCATGAGAGGAGTGATTT 236
Query 234 GGAAAACAAAGGAGTCTCCATCGATTTTCTGCCACAGGGAGA-GGGAAAGATTAAAGCTT 292
||||||| |||||||||||||| |||||||||| ||| | | |||||| ||||||
Sbjct 237 ACAAAACAATGGAGTCTCCATCGACTTTCTGCCACCCGGA-ATGATAAAGATCGAAGCTT 295
Query 293 GTGATGCAAGTCATGGAATATTGCTTTGTGTTAATG-ATACAGGAATAATAC-CG-GAAT 349
|||||||||||||||| ||||||||||||||||| | ||||| || || | || | ||
Sbjct 296 GTGATGCAAGTCATGGGATATTGCTTTGTGTTAA-GTATACA-AAACCAT-CACGTGGAT 352
Query 350 ACATAGTCTGCAAACCAACCACAAAACAGTATCAGATCATACCAAACCCAAAAGTG-GGG 408
||||||||| |||||||||||| |||||||||||| |||||||||| ||| ||||| ||
Sbjct 353 ACATAGTCTTCAAACCAACCACTAAACAGTATCAGGTCATACCAAAGCCAGAAGTGAAGG 412
Query 409 AGATGTGATAAGTCACTCGGTATAATGGTAACCGGATTGAACCCTTTCCGGTATAAAGTA 468
| || |||| |||| | ||| || ||||| ||||||||||||||||||||||||| ||
Sbjct 413 -GTTGGGATATGTCATTGGGTTTAGCGGTAATCGGATTGAACCCTTTCCGGTATAAAATA 471
Query 469 TTTAGGCTTTCGAAG--TC-GC------------C-C--GGTAT-GA--ATCGGAGTCTC 507
||||||||| || || || | | ||||| | || || || |
Sbjct 472 CAAAGGCTTTCGCAGTCTCGGCGTATGTGTATGTCTCGGGGTATCTACCATTTGAATCAC 531
Query 508 AGAACTTTTGCGTGCGAAGTTTTTGATTCCGATTCGTTTATGTGGAAGAGGA-TAAAAAA 566
||||||||| |||||||||||| ||||| |||||||||| ||||||| || || ||||
Sbjct 532 AGAACTTTTATGTGCGAAGTTTTCGATTCTGATTCGTTTACCTGGAAGA-GATTAGAAAA 590
Query 567 TCTGCGTCTACCAAGAACAGACGGTTTAATTTTTTCAAACCCGGTACAAGCTTCGGGGTT 626
| |||||||||||| ||||||| | ||||||||||| |||||| |||||| |||||||||
Sbjct 591 TTTGCGTCTACCAAAAACAGACAGATTAATTTTTTCCAACCCGATACAAGTTTCGGGGTT 650
Query 627 CTTGAATTGGATATCACGGAACAACAACGTGATCCGGTTATGTCTCAAAACCGAAACTTG 686
|||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 651 CTTGCATTGGATATCACGGAACAACAATGTGATCCGGTTTTGTCTCAAAACCGAAACTTG 710
Query 687 GTCTTTCTTACATACCCCAAACGT-TGGTATATTCCCA-GAGTTGGTCAGATACGAAGGG 744
||| ||||| ||||| || ||| | || | | ||| || || || |||||||||||||||
Sbjct 711 GTCCTTCTTCCATACTCCGAAC-TCTGATGTTTTCTCAGGA-TTAGTCAGATACGAAGGG 768
Query 745 AAGCTAGGTGTTATTCGTCACTGGATAAACAACA-ATCAAGAAGATGTTCACGGA-TTAT 802
|||||||||| ||||||||| |||| |||||| | ||||||||||||||||| || ||||
Sbjct 769 AAGCTAGGTGCTATTCGTCAGTGGACAAACAA-AGATCAAGAAGATGTTCAC-GAGTTAT 826
Query 803 GGGTTTTAAAGAGCAGTTTTGAGAAGTCGTGGATAAAAGTGAAAGATATTAAAAGCATTG 862
|||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 827 GGGTTTTAAAGAGCAGTTTTGAAAAGTCGTGGGTTAAAGTGAAAGATATTAAAAGCATTG 886
Query 863 GAGTAGATCACATTGTGTGGACTCCAAGCAACGACGTCGTAATGCTTTC-TAGTTGGGAT 921
|||||||| ||| ||||||||||||||||||||| ||| || |||| |||| | |||
Sbjct 887 GAGTAGATTTGATTACGTGGACTCCAAGCAACGACGTTGTATTG-TTTCGTAGTAGTGAT 945
Query 922 CGTG-TCTGCCTCTACAACATTAACACAGAAAAGTTGAACTTAGTTCATACAAACAAAGA 980
|||| | |||||||||||||| ||| |||| |||||||| |||||| || |||| |||||
Sbjct 946 CGTGGT-TGCCTCTACAACATAAACGCAGAGAAGTTGAATTTAGTTTATGCAAAAAAAGA 1004
Query 981 ----T-T--TTGCCTCTTACGTTTGTTTCCCGTTTTGTTCTGATTACGAGAAGATTGATC 1033
| | ||| |||| ||||||||| |||||||||||||||||||||| | ||||||
Sbjct 1005 GGGATCTGATTGT-TCTTTCGTTTGTTTTCCGTTTTGTTCTGATTACGAGAGGGTTGATC 1063
Query 1034 TG 1035
||
Sbjct 1064 TG 1065
> AT2G05360.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: F-box associated ubiquitination effector family protein
(TAIR:AT1G64295.1); Has 72 Blast hits to 64 proteins in
7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr2:1956115-1959303 REVERSE LENGTH=1077
Length=1077
Score = 691 bits (374), Expect = 0.0
Identities = 431/459 (94%), Gaps = 2/459 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCTCCGGTGCTAAATCAAGACATAATCCAAGAGGTTCTTTCTTATTTCCCGGCT 60
||||||||||||||| | ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 1 ATGAGTTCTCCGGTGATGAATCAAGACATGATCCAAGAAGTTCTTTCTTATCTCCCGGCT 60
Query 61 TCAAAAATTGGAAAATTCAGGCTCCTGAATAAAGAGTGCAACAAGAGAAGCTACGAGTCA 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAAAAAATGGAAAATTCAGGCTCCTGAATAAAGAGTGCAACAAGAGAAGCTACGAGTCA 120
Query 121 TGGTTTCTCAATCTCAATTTCCATAGAACCAACTATATCTCCGGATACTTCCTAGAACGC 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TGGTTTCTCAATCTCAATTTCTATAGAACCAACTATATCTCCGGATACTTCCTAGAAAGC 180
Query 181 TACGAACGAGGATACA-AACTTGATACCAGTTTTGTCCATGAGAGGAGAGATTTGGAAAA 239
||| || ||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACAAAGGAGGATACACAA-TTGATACCAGTTTTGTCCATGAGAGGAGAGATTTGGAAAA 239
Query 240 CAAAGGAGTCTCCATCGATTTTCTGCCACAGGGAGAGGGAAAGATTAAAGCTTGTGATGC 299
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 240 CAAAGGAGTCTCCATCGATTTTCTGCCACAGGGAGAGAGAAAGATCAAAGCTTGTGATGC 299
Query 300 AAGTCATGGAATATTGCTTTGTGTTAATGATACAGGAATAATACCGGAATACATAGTCTG 359
||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 300 AAGTCATGGGATATTGCTTTGTGTTAATGATACAGGACTAATACCTGAATACATAGTCTG 359
Query 360 CAAACCAACCACAAAACAGTATCAGATCATACCAAACCCAAAAGTGGGGAGATGTGATAA 419
|||||||||||||||||||||||| |||||||||| ||||||| || | || |||||||
Sbjct 360 CAAACCAACCACAAAACAGTATCATATCATACCAACCCCAAAATTGTGTAGCCGTGATAA 419
Query 420 GTCACTCGGTATAATGGTAACCGGATTGAACCCTTTCCG 458
|||||||||||||| |||||| |||||| | ||||||||
Sbjct 420 GTCACTCGGTATAACGGTAACTGGATTGGAGCCTTTCCG 458
Score = 279 bits (151), Expect = 3e-74
Identities = 173/183 (95%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 718 TTCCCAGAGTTGGTCAGATACGAAGGGAAGCTAGGTGTTATTCGTCACTGGATAAACAAC 777
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 460 TTCCCAGAGTTGGTCAGATACGAAGGGAAGCTAGGTGTTATTCTTCACTGGATAAACAA- 518
Query 778 A-ATCAAGAAGATGTTCACGGATTATGGGTTTTAAAGAGCAGTTTTGAGAA-GTCGTGGA 835
| |||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||
Sbjct 519 AGATCAAGAAGATGTTCACGGATTATGGGTTTTAAAGAGCAGTTGTG-GAAAGGCGTGGA 577
Query 836 TAAAAGTGAAAGATATTAAAAGCATTGGAGTAGATCACATTGTGTGGACTCCAAGCAACG 895
||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||
Sbjct 578 TAAAAGTGAAAGATATTAAAAGCATTGGATTAGGTCAGATTGTGTGGACTCCAAGCAACG 637
Query 896 ACG 898
|||
Sbjct 638 ACG 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5