BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337960
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64210.1 | Symbols: | Leucine-rich repeat protein kinase fa... 2534 0.0
> AT1G64210.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:23831033-23832863 FORWARD LENGTH=1764
Length=1764
Score = 2534 bits (1372), Expect = 0.0
Identities = 1637/1764 (93%), Gaps = 21/1764 (1%)
Strand=Plus/Plus
Query 10 TTCTTCTTCTCTTTGATTCTCTGTTTTGTTCTCATTTCCTCTCAGACTCTTGACGACGAC 69
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 16 TTCTTCTTCTCTTTGATTCTCTGTTTTGTTCTGATTTCCTCTCAGACTCTTGAAGACGAC 75
Query 70 AAGAAAGCTTTGCTTGATTTCTTGTCTAATTTTAACTCGTCTCGTCTCCATTGGAACCAG 129
||||||||||||||| |||||||||||| ||| || || |||||||||||||||||||||
Sbjct 76 AAGAAAGCTTTGCTTCATTTCTTGTCTAGTTTCAATTCTTCTCGTCTCCATTGGAACCAG 135
Query 130 AGCTC-TCCGGTTTGTCATCGCTGGACCGGAGTTACCTGCAACGAAAACCGAGATCGAAT 188
||||| | ||||||||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct 136 AGCTCAGAC-GTTTGTCATAGCTGGACCGGTGTTACCTGCAACGAAAACGGAGATCGAAT 194
Query 189 TGTAGCCGTTAGATTGCCTGCGGTTGGATTCAACGGTTTGATTCCTCCTTTCACCATCAG 248
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 TGTATCCGTTAGATTGCCTGCGGTTGGATTCAACGGTTTGATTCCTCCTTTCACCATCAG 254
Query 249 TCGTCTCTCTTCTCTCAAGTTTCTAAGCCTTAGAAAGAACCAATTCACCGGAGACTTCCC 308
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 255 TCGTCTCTCTTCTCTCAAGTTTCTAAGCCTTAGAAAGAACCATTTCACCGGAGACTTCCC 314
Query 309 TTCTGATTTCAGAAATCTCAAGAACTTGACTCATCTCTATCTACAACATAACCGCCTCTC 368
||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||
Sbjct 315 TTCTGATTTCACAAATCTCAAGAGCTTGACTCATCTCTACCTACAACATAACCACCTCTC 374
Query 369 GGGTCCTTTACCGG-TGATTCT-CTCAGAGTTGAAGAATCTTAAGGTTCTTGATCTGTCT 426
||||| ||| | | || || ||| |||||||||||||||||||||||||||||||||
Sbjct 375 AGGTCCACTACTAGCT-AT-CTTCTCGGAGTTGAAGAATCTTAAGGTTCTTGATCTGTCT 432
Query 427 AACAATGGATTCAACGGAAGCATCCCAAAGTCTCTTTCAGGTTTGACCAGCCTTCGAGTC 486
|||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||
Sbjct 433 AACAATGGATTCAACGGAAGCATCCCAACCTCTCTTTCAGGATTGACTAGCCTTCAAGTC 492
Query 487 TTGAATCTTGCAAACAATTCATTCTCAGGGGAGATTCCTGATCTTGATCTTCCAAAACTG 546
|||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 493 TTGAATCTTGCAAACAATTCATTCTCAGGGGAAATTCCAAATCTTCATCTTCCAAAACTG 552
Query 547 AGTCAAATCAACTTCTCCAACAACAAGCTCATCGGTACAATACCGAAA-TCTCTTCAAAG 605
||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 553 AGTCAGATCAACTTGTCCAACAACAAGCTCATCGGTACAATACC-AAAGTCTCTTCAAAG 611
Query 606 ATTCCAAAGTTCAGCCTTTTCTGGCAACAAGCTTAACGAGAGGAAGAAACAAAACAAGAC 665
||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||
Sbjct 612 ATTCCAAAGTTCAGCTTTTTCTGGCAACAACCTTACCGAGAGGAAGAAACAACGCAAGAC 671
Query 666 TCCTTTCGGGTTAAGCCAGCTTGCTTTCTTGCTGATTCTGGCTGCAGCTTGCATTTTGTG 725
|||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 672 TCCTTTCGGGTTAAGCCAACTTGCTTTCTTGCTGATTCTGTCTGCAGCTTGCGTTTTGTG 731
Query 726 TGTTTCAGGATTTTCCTTTATAATGATCACTTGTTTCGGGAAGACTAGAATCTCGGGGAA 785
|||||| ||||| || || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 732 TGTTTCCGGATTATCATTCATAATGATCACTTGTTTCGGGAAGACTAGAATCTCCGGGAA 791
Query 786 GTTGCGGAAGAGAGACTCGTCTTCTCCTCCAGGAAACTGGACATCTAGAGATGGTAACAC 845
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 792 GTTGCGAAAGAGAGACTCGTCTTCTCCTCCAGGAAACTGGACATCTAGAGATGATAACAC 851
Query 846 CGAAGAAGGCGGGAAGATCATCTTCTTCGGTGGAAGAAACCACTTATTTGATCTAGATGA 905
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 852 TGAAGAAGGCGGGAAGATCATCTTCTTTGGTGGAAGAAACCACTTATTTGATTTAGATGA 911
Query 906 TTTGCTAAGCTCATCTGCAGAAGTTTTGGGGAAGGGTGCTTTTGGTACAACCTATAAGGT 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TTTGCTAAGCTCATCTGCAGAAGTTTTGGGGAAGGGTGCTTTTGGTACAACCTATAAGGT 971
Query 966 ATCAATGGAGGACATGAGCACGGTTGTAGTGAAGCGATTGAAGGAAGTTGTCGTGGGAAG 1025
| |||||||||||||||||||||| || || || |||||||||||||||||||| |||||
Sbjct 972 AACAATGGAGGACATGAGCACGGTCGTTGTAAAACGATTGAAGGAAGTTGTCGTTGGAAG 1031
Query 1026 ACGAGAGTTTGAGCAACAAATGGAGGTCATTGGTATGATCAGACATGAAAATGTAGCTGA 1085
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1032 ACGAGAGTTTGAGCAACAAATGGAGATCATTGGTATGATCAGACATGAAAATGTAGCTGA 1091
Query 1086 GCTAAAGGCTTACTACTACTCCAAAGACGATAAGCTCGCGGTTTATAGCTATTACAGTCA 1145
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1092 GCTAAAGGCTTACTACTACTCCAAAGACGATAAGCTCGCGGTTTATAGCTATTACAATCA 1151
Query 1146 TGGAAGCCTCTTCGAGATGCTGCACGGAAACAGAGGAGAG-TATCATCGAGTACTGTTAG 1204
||||||||||||||| || |||||||||||||||||| || ||||||||||||| |||||
Sbjct 1152 TGGAAGCCTCTTCGAAATACTGCACGGAAACAGAGGA-AGGTATCATCGAGTACCGTTAG 1210
Query 1205 ATTGGGATGCTAGATTGAGGATAGCAACCGGGGCAGCGAGAGGACTAGCTAAAATCCATG 1264
|||||||||||||| || | ||||||||||| ||||||||||| |||||||||||||| |
Sbjct 1211 ATTGGGATGCTAGACTGCGAATAGCAACCGGTGCAGCGAGAGGGCTAGCTAAAATCCACG 1270
Query 1265 AAGGAAACAACGGGAAATTCATCCATGGAAACATCAAATCCTCCAACATATTCTTAGACT 1324
|||| || | ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 1271 AAGGGAA----G-----TTCATACATGGAAACATCAAATCCTCAAACATCTTCTTAGACT 1321
Query 1325 CACAATGTTATGGCTGCATCGGCGATATTGGCTTGACGACAATCATGAGATCTCTTCCTC 1384
||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct 1322 CACAATGCTATGGCTGCATAGGCGATGTTGGCTTGACGACAATCATGAGATCACTTCCTC 1381
Query 1385 AAACCACCTGCCTTACTTCGGGTTACCACGCACCTGAAATAACAGACACAAGAAGAAGCA 1444
||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 1382 AAACCACTTGCCTTACTTCTGGCTACCATGCACCTGAAATAACAGACACAAGAAGAAGCA 1441
Query 1445 CGCAGTTTTCGGATGTGTACAGCTTCGGTGTGGTATTACTCGAGCTCTTGACAGGGAAAT 1504
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1442 CACAGTTTTCGGATGTATACAGCTTCGGTGTGGTATTACTGGAGCTCTTGACAGGGAAAT 1501
Query 1505 CTCCGGCGAGTCCAGCGGA-TTCAGTAACAACAGAAGGCGAAAACATGGATTTAGCAAGC 1563
| || | ||||| ||| || || |||| |||||| ||| || |||||||| ||||| |||
Sbjct 1502 CACCAGTGAGTCAAGCAGAATT-AGTACCAACAGGAGGTGAGAACATGGACTTAGCTAGC 1560
Query 1564 TGGATAAGATCAGTGGTGGCTAGAGAGTGGACTGGAGAAGTATTTGATATGGAGATATTG 1623
||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1561 TGGATAAGATCTGTGGTGGCTAAAGAGTGGACTGGAGAAGTGTTTGATATGGAGATATTG 1620
Query 1624 AGTCAATCAGGTGGTTTCGAGGAGGAAATGGTTGAGATGTTACAAATAGGATTGGCTTGT 1683
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1621 AGTCAATCAGGTGGTTTCGAGGAGGAGATGGTTGAGATGTTGCAAATAGGATTGGCTTGT 1680
Query 1684 GTAGCTCTGAAGGAACAGGAACGACCTCATATAGCTCAAGTTTTGAAATTGATTGAAGAT 1743
|| ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GTTGCTCTGAAGCAACAAGAAAGACCTCATATAGCTCAAGTTTTGAAATTGATTGAAGAT 1740
Query 1744 ATTCGATCAATTGATGCAGAGTGA 1767
||||||||| ||||||||||||||
Sbjct 1741 ATTCGATCAGTTGATGCAGAGTGA 1764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87399148845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5