BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg337983

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G63960.1 | Symbols:  | Copper transport protein family | chr...   368    2e-101


> AT1G63960.1 | Symbols:  | Copper transport protein family | chr1:23738201-23738506 
FORWARD LENGTH=306
Length=306

 Score =  368 bits (199),  Expect = 2e-101
 Identities = 276/308 (90%), Gaps = 25/308 (8%)
 Strand=Plus/Plus

Query  91   ATGGATTCAAAAGAAGGGAAGTTAACGGTGATTGGTGAGTTTGACGAAATGCAGATTCTC  150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATTCAAAAGAAGGGAAGTTAACGGTGATTGGTGAGTTTGACGAAATGCAGATTCTC  60

Query  151  AAAAAACTCAAAAAGAGATGGGAGAGTGCGAAAATGG-TGACATTTGGCCCGTTCGATCC  209
            ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct  61   AAAAAACTCAAAAAGAGATGGGAGAGTGCGAAAATGGCT-ACATTTGGCCCGTTCGATCC  119

Query  210  GAAGAAGGAAGCGGAAACCGCTGCAGCTGCGgaaaagaagaagaaagaagaaa--g----  263
            |||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
Sbjct  120  GAAGAAGGAAGCGGAAACCGCTGCAGCTGCGGAAAAGAAGAAGAAAGAAGAAAATGAACG  179

Query  264  TGAACGTGAA-G----C-T-------CT-TT-ACCGGTCTCAGGCTTACCGTGAAATTCC  308
            |||||||||| |    | |       || || ||||||||||| || ||| ||| | |||
Sbjct  180  TGAACGTGAACGTGAACGTGAAGAAGCTCTTTACCGGTCTCAGTCTCACCATGACACTCC  239

Query  309  GGTATGTCCT-TCGCATCATCACACTACTATTGTGTGCGATCATGATCACGGCTGTATAA  367
            ||| |||||  | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  GGTTTGTCCAAT-GCATCATCACACTACTATTGTGTGCGATCATGATCACGGCTGTATAA  298

Query  368  TCTCTTAA  375
            ||||||||
Sbjct  299  TCTCTTAA  306



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17643979899


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5