BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337990
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63750.3 | Symbols: | Disease resistance protein (TIR-NBS-L... 217 2e-55
AT1G63870.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 213 2e-54
AT2G16870.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 180 2e-44
AT1G64070.1 | Symbols: RLM1 | Disease resistance protein (TIR-N... 176 3e-43
AT1G56510.1 | Symbols: WRR4, ADR2 | Disease resistance protein ... 126 3e-28
AT1G56540.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 78.7 8e-14
AT1G56520.2 | Symbols: | Disease resistance protein (TIR-NBS-L... 62.1 8e-09
> AT1G63750.3 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:23650848-23655359 FORWARD LENGTH=3514
Length=3514
Score = 217 bits (117), Expect = 2e-55
Identities = 214/258 (83%), Gaps = 17/258 (7%)
Strand=Plus/Plus
Query 2 TGCATATACCAGAG-AAGATGGAATTCCCACGC-CGTCTAAGGTTGTTACATTGGG-AGG 58
|||| ||||| ||| ||| |||| || |||| | ||||||||||| | ||||||| | |
Sbjct 1816 TGCACATACCTGAGAAAG-TGGAGTTTCCAC-CTCGTCTAAGGTTACTGCATTGGGCA-G 1872
Query 59 CATACCCAAGAAAGAGTCTTCCTCCAACATTTCATCCT-GAATATCTTGTCGAACTCAAT 117
|||||||||| |||||||||||||| |||||| || || |||| |||||| |||||||||
Sbjct 1873 CATACCCAAGCAAGAGTCTTCCTCCTACATTTAAT-CTGGAATGTCTTGTAGAACTCAAT 1931
Query 118 ATGCGGGAAAGCCAGTTCGA-ATACCTATGGCAAGGAACCC-AGGCGCTTAAAAATCTCA 175
||||||||||||| | |||| | | |||||| ||||||||| | | ||||| |||||||
Sbjct 1932 ATGCGGGAAAGCCTGGTCGAGA-AGCTATGGGAAGGAACCCAACAC-CTTAAGAATCTCA 1989
Query 176 AAAAGATGGATTT-ATTAGGGT-CATCTAACTTGAAGGAACTCCCAGATCTTTCAAATGC 233
| | |||||||| | | | || || || |||||||||||||||||||||||||||||
Sbjct 1990 AGTATATGGATTTGACT-GAGTCCA-AGAATTTGAAGGAACTCCCAGATCTTTCAAATGC 2047
Query 234 TACAAATCTGGAGATATT 251
||||||||||||| ||||
Sbjct 2048 TACAAATCTGGAG-TATT 2064
> AT1G63870.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:23707131-23711901 REVERSE LENGTH=3096
Length=3096
Score = 213 bits (115), Expect = 2e-54
Identities = 214/261 (82%), Gaps = 9/261 (3%)
Strand=Plus/Plus
Query 2 TGCATATACCAGAGAAGATGGAATTCCCACGCCGTCTAAGGTTGTTACATTGGGAGGCAT 61
|||| ||||| ||| ||| || || || || ||||||||||| |||||||||||||||
Sbjct 1706 TGCACATACCTGAGGAGACAGAGTTTCCGCGTCGTCTAAGGTTACTACATTGGGAGGCAT 1765
Query 62 ACCCAAGAAAGAGTCTTCCTCCAACATTTCATCCTGAATATCTTGTCGAACTCAATATG- 120
||||| | |||||||||||||| |||||||| ||| ||||||||||||| ||| |||||
Sbjct 1766 ACCCATGCAAGAGTCTTCCTCCTACATTTCAACCTCAATATCTTGTCGAGCTCTATATGC 1825
Query 121 CGGGAAAGCCAG-TTCGAATACCTATGGCAAGGAACCCAGGCG-CTTAAAAATCTCAAAA 178
| | |||||| || ||| | |||||| ||||||| || ||| |||| | ||||||| |
Sbjct 1826 CAAG-TAGCCAGCTT-GAAAAGCTATGGGAAGGAACACA-GCGCCTTACACATCTCAAGA 1882
Query 179 AGATGGATTTATTAGGGTCATCTA-ACTTGAAGGAACTCCCAGATCTTTCAAATGCTACA 237
||||| |||| || | ||| || | | ||||||||||| || ||||||||||||||||||
Sbjct 1883 AGATGAATTTGTTTGCGTC-TCGACATTTGAAGGAACTTCCGGATCTTTCAAATGCTACA 1941
Query 238 AATCTGGAGATATTGG-TCTG 257
|||||||||| | ||| ||||
Sbjct 1942 AATCTGGAGAGAATGGATCTG 1962
> AT2G16870.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr2:7308077-7311686 REVERSE LENGTH=3330
Length=3330
Score = 180 bits (97), Expect = 2e-44
Identities = 204/254 (80%), Gaps = 14/254 (6%)
Strand=Plus/Plus
Query 1 ATGCATATACCAGAGAAGATGGAA-TTCCCACGC-CGTCTAAGGTTGTTACATTGGGAGG 58
||||||||||| ||| | || ||| || |||| | || |||||||| |||||||||| |
Sbjct 1702 ATGCATATACCTGAGGACAT-GAAGTTTCCAC-CTCGCCTAAGGTTACTACATTGGGAAG 1759
Query 59 CATACCCAAGAAAGAGTCTTCCTCCAACATTTCAT-CCT-GAATATCTTGTCGAACTCAA 116
|||| || || ||||||||||||| |||| | ||| ||| ||||||||||||||||
Sbjct 1760 CATATCCGAGCAAGAGTCTTCCTCTTGGATTT--TGCCTGGAAAATCTTGTCGAACTCAA 1817
Query 117 TATGCGGGAAAGCCAGTTCGAATACCTATGGCAAGGAACCCAGGC-GCTT-AAAAATCTC 174
|||| || |||||| ||||| | || ||| ||||||| || || | || | ||||||
Sbjct 1818 TATGAAAGATAGCCAGCTCGAAAAGCTCTGGGAAGGAACTCA-GCTG-TTGACAAATCTT 1875
Query 175 AAAAAGATGGATTTATTAGGGTCA-TCTAACTTGAAGGAACTCCCAGATCTTTCAAATGC 233
|| ||||||||||| | | | ||| | | | |||||||||||||||||||||||||||||
Sbjct 1876 AAGAAGATGGATTTGTCAAGATCAGT-TCATTTGAAGGAACTCCCAGATCTTTCAAATGC 1934
Query 234 TACAAATCTGGAGA 247
|||||| |||||||
Sbjct 1935 TACAAACCTGGAGA 1948
> AT1G64070.1 | Symbols: RLM1 | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:23779949-23783449 FORWARD LENGTH=2994
Length=2994
Score = 176 bits (95), Expect = 3e-43
Identities = 208/262 (79%), Gaps = 9/262 (3%)
Strand=Plus/Plus
Query 1 ATGCATATACCAGAGAAGATGGAATTCCCACGC-CGTCTAAGGTTGTTACATTGGGAGGC 59
||| ||||||||||| | ||||| || |||| | || |||||||| | |||||||| ||
Sbjct 1705 ATGGATATACCAGAGGACATGGAGTTTCCAC-CTCGCCTAAGGTTACTCCATTGGGATGC 1763
Query 60 ATACCCAAGAAAGAGTCTTCCTC-CAACATTTCATCCTGAATATCTTGTCGAACTCAATA 118
||||||||| ||| ||||||||| || ||||| | ||| |||| ||||||||| |||
Sbjct 1764 ATACCCAAGCAAGTGTCTTCCTCTTAA-ATTTCGGGCGGAAAATCTAGTCGAACTCGATA 1822
Query 119 TGCGGGAAAGCCAGTTCGAATACCTATGGCAAGGAACCCAGGC-GCTTA-AAAATCTCAA 176
|| || |||| | |||| ||||| |||| |||||| || || ||| | ||| |||||
Sbjct 1823 TGAAAGATAGCCGGCTCGAGTACCTCTGGCCAGGAACTCA-GCTGCTGACGAAA-CTCAA 1880
Query 177 AAAGATGGATTTATTAGGGTCATCTAACTTGAAGGAACTCCCAGATCTTTCAAATGCTAC 236
||| | |||| ||| |||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1881 GAAGCTAAATTTGGAAGGTTCATATAATTTGAAGGAACTCCCAGATCTTTCAAATGCTAC 1940
Query 237 AAATCTGGAGATATTGG-TCTG 257
|||| ||||||| || | ||||
Sbjct 1941 AAATTTGGAGATGTTAGATCTG 1962
> AT1G56510.1 | Symbols: WRR4, ADR2 | Disease resistance protein
(TIR-NBS-LRR class) | chr1:21167589-21173632 FORWARD LENGTH=3657
Length=3657
Score = 126 bits (68), Expect = 3e-28
Identities = 164/210 (78%), Gaps = 8/210 (4%)
Strand=Plus/Plus
Query 41 GGTTGTTACATTGGGAGGCATACCCAAGAAAGAGTCTTCCT-CCAACATTTCATCCTGAA 99
|||| || |||||||| || ||| || ||||||| |||||| | | ||| | | |||
Sbjct 1860 GGTTATTTCATTGGGATGCCTACTCAGGAAAGAGGCTTCCTAGTAGC-TTTTTTGCAGAA 1918
Query 100 TATCTTGTCGAACTCAATATGCGGGAAAGCCAGTTCGA-ATACCTATGGCAAGGAACCCA 158
||||||| ||| ||||||||| || ||| || || | | | |||||| ||||||| ||
Sbjct 1919 AATCTTGTTGAAGTCAATATGCAAGATAGCGAGCTCCAGA-AGCTATGGGAAGGAACTCA 1977
Query 159 G-GCGCTTAAAAATCTCAAAAAGATGGAT-TTATTAGGGTCATCTAACTTGAAGGAACTC 216
| || ||| |||||||| ||||| ||| || | | |||||||| |||| ||||||
Sbjct 1978 GTGC-CTTGCCAATCTCAAGAAGATAGATCTT-TCAAGGTCATCTTGTTTGACGGAACTT 2035
Query 217 CCAGATCTTTCAAATGCTACAAATCTGGAG 246
||||||||||||||||||||||||||||||
Sbjct 2036 CCAGATCTTTCAAATGCTACAAATCTGGAG 2065
> AT1G56540.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:21181664-21185306 FORWARD LENGTH=3291
Length=3291
Score = 78.7 bits (42), Expect = 8e-14
Identities = 68/80 (85%), Gaps = 4/80 (5%)
Strand=Plus/Plus
Query 456 CAGGGAGAGAGTGTTTGAATTCAGCAGCGA-ACTAC-AAGACTTAGACATTATTGAATGT 513
||| |||| |||| | |||||||||||| | || || || | || |||||| ||||||||
Sbjct 2871 CAGAGAGATAGTGCTCGAATTCAGCAGC-ATAC-ACAAACATTTCGACATTGTTGAATGT 2928
Query 514 GGTGTCCAGATCTTGACGGA 533
||||||||||||||||||||
Sbjct 2929 GGTGTCCAGATCTTGACGGA 2948
> AT1G56520.2 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:21174664-21178974 REVERSE LENGTH=3624
Length=3624
Score = 62.1 bits (33), Expect = 8e-09
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 501 CATTATTGAATGTGGTGTCCAGATCTTGACGGACGA 536
||||||||||||||||||||||||||||| ||||||
Sbjct 2892 CATTATTGAATGTGGTGTCCAGATCTTGATGGACGA 2927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40036615159
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5