BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338015
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63560.1 | Symbols: | Receptor-like protein kinase-related ... 1040 0.0
AT1G63570.1 | Symbols: | Receptor-like protein kinase-related ... 217 2e-55
> AT1G63560.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr1:23573094-23574278 FORWARD LENGTH=1185
Length=1185
Score = 1040 bits (563), Expect = 0.0
Identities = 657/701 (94%), Gaps = 12/701 (2%)
Strand=Plus/Plus
Query 1 ATGTCCCAACCTCACCACAT-GCACACTTTCTGCGACGACCA-ATTATCCGACAACTTCA 58
|||||||||||||| ||||| || ||||||||||||||| || |||||||||||||||||
Sbjct 68 ATGTCCCAACCTCAACACATGGC-CACTTTCTGCGACGA-CAGATTATCCGACAACTTCA 125
Query 59 CACAAACCAGCTCATACAAATCAAACCGTGAAACCCTACTTTCTTCTCTCCGTGACCATT 118
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 126 CACAAACCAGCTCATACAAAGCAAACCGTGAAACCCTACTTTCTTCTCTCCGTGACCGTT 185
Query 119 CCTCCCTCGGAACCTATTCCAATGCCACAATCGGTCTTAGCCCCGACACAGTCTATGGCA 178
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CCTCCCTTGGAACCTATTCCAATGCCACAATCGGTCTTAGCCCCGACACAGTCTATGGCA 245
Query 179 TGTTCCTCTGCCGAGGAGACCTCCCCAAAACATCTTGTTCGGACTGTGTCAAGACCGCAA 238
|||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||||||
Sbjct 246 TGTTTCTCTGCCGAGGAGACCTCACCAAAACATCATGTTCGGACTGTGTCAAAACCGCAA 305
Query 239 CCGTAGAAATCACTAAAAATAA---CTGCACTTCCAGAAAAACTGCTCTAATATACTACG 295
|| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 306 CCCTAGAAATCACTAAAAATAATAACTGCACTTCCAGAAAAACTGCTCTAATATTCTACG 365
Query 296 AGGAGTGTATGGTTCGTTACTCCAATGTGTCCTTCTTCACGCTCGTAGAA---GACGGGC 352
|||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||
Sbjct 366 AGGAGTGTATGGTTCGATACTCCAATGTTTCCTTCTTCACGCTCGTAGAACTAGACGGGC 425
Query 353 CTTACGCCGCTAGATACTCTGTCGCTTCGTTTCCTACTTCTATTTTTAGTTCGTTCCAAC 412
|||||| ||||| ||||||| |||| | |||||||||||| |||||||||| |||||||
Sbjct 426 CTTACGTCGCTAAATACTCTCTCGCCACTTTTCCTACTTCTCTTTTTAGTTCTTTCCAAC 485
Query 413 AAACGTTATCCAATAAGGTAGAGCAACTAATTATCCTCATAGGATCAAAGTCTTCTTTGT 472
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 486 AAACGTTATCCAATAAGGTAGAGCAACTAATTATCCTCATAGCATCAAAGTCTTCTTTGT 545
Query 473 CTGCTTCTACGCCTTATTACGAGAAGGATATATCACGTGTGAATGCATTAGAGGGCTCGT 532
||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||
Sbjct 546 CTGCTTCTACGCCTTATTACGTGAAGGATATATCACGTGTAAATGAATTAGAGGGCTCGT 605
Query 533 ATACATTAGACACAGTGGTTCAGTGTAGTCCTGATCTTGATTCAGCAAATTGCGGCGTCT 592
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 606 ATACATTAGACACGGTGGTTCAGTGTAGTCCTGATCTTGATCCAGCAAATTGCGGCGTCT 665
Query 593 GTTTGAGACTTGTGGTCAATAG-TCTCTCAGGCTGTTGTACCAATGCTCGTTGGGGTCAG 651
||||||||||||||||||| || ||||||||||||||||||||||||||||| | ||||
Sbjct 666 GTTTGAGACTTGTGGTCAA-AGGTCTCTCAGGCTGTTGTACCAATGCTCGTTTTGCTCAG 724
Query 652 TTCAATCTTCCTAAATGTCTTTTGAAGTATGACACAACCGG 692
||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 725 TTCTATCTTTCTAAATGTTTTTTGAAGTATGACACAACCGG 765
Score = 100 bits (54), Expect = 2e-20
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 691 GGAAACGAAATGTTTAGGAGAATTTTCATTACAGCCTTGACAACTTCGGTGTTAGCACTT 750
||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1046 GGAAACGAAATATTGAGGAGAATTTTCATCACAGCAATGACAACTTCGGTGTTAGCACTT 1105
Query 751 GTGGGTCTATGA 762
|||||||| |||
Sbjct 1106 GTGGGTCTGTGA 1117
> AT1G63570.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr1:23575450-23576304 FORWARD LENGTH=855
Length=855
Score = 217 bits (117), Expect = 2e-55
Identities = 271/341 (79%), Gaps = 28/341 (8%)
Strand=Plus/Plus
Query 1 ATGTCCCAACCTCACCACATGCACACTTTCTGCGACGACCAATTATCCGACAACTTCACA 60
|||||||||||||| |||||||||||||||||| | | | | ||||| |||||||
Sbjct 67 ATGTCCCAACCTCAACACATGCACACTTTCTGC-A-G--C----GT-CGACAGCTTCACA 117
Query 61 CAAACCAGCTCATAC-AAATCAAACCGTGAA-ACCCTACTTTCTTCTCTC--CGTGACCA 116
||||||||||| ||| ||| ||||||| || | |||||| | ||||| | ||| |
Sbjct 118 CAAACCAGCTCCTACGAAA-CAAACCG-CAACATCCTACTCACCACTCTCAGCTTGA-C- 173
Query 117 TTCCTCCCTCGGAAC-CTATTCCAATGCCACAATCGGTCTTAGCCCCGACACAGTCTATG 175
|||||| ||| | || ||||| || |||||||||||||| |||||||||||||||||||
Sbjct 174 TTCCTCGCTC-GTACACTATTTAAACGCCACAATCGGTCTCAGCCCCGACACAGTCTATG 232
Query 176 GCATGTTCCTCTGCCGAGGAGACCTCCCCAAAACATCTTGTTCGGACTGTGT-CAAGACC 234
||||||||||||| |||||||| || || ||||||||| || |||||||| ||| |||
Sbjct 233 GCATGTTCCTCTGTAGAGGAGACATCAACACAACATCTTGCTCAGACTGTGTTCAA-ACC 291
Query 235 GCAACCGTAGAAATCACTAAAAATAACTGCACT-TCCAGAAAA-ACTGCTCTAATATACT 292
||| | | || ||| ||| ||| ||| ||| | | |||| | ||| | |||||||
Sbjct 292 GCAGCAATCGAGATCGCTACAAA---CTGTACTCTTAACAAAAGA--GCTTTCATATACT 346
Query 293 ACGAGGAGTGTATGGTTCGTTACTCCAATGTGTCCTTCTTC 333
|||| |||||||||||||| ||||| ||||| |||||||||
Sbjct 347 ACGACGAGTGTATGGTTCGATACTCAAATGTTTCCTTCTTC 387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5