BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg338031

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G63295.1 | Symbols:  | Remorin family protein | chr1:2347406...   715    0.0  


> AT1G63295.1 | Symbols:  | Remorin family protein | chr1:23474069-23475532 
REVERSE LENGTH=748
Length=748

 Score =  715 bits (387),  Expect = 0.0
 Identities = 429/450 (95%), Gaps = 0/450 (0%)
 Strand=Plus/Plus

Query  1    ATGGGACAAAATAAACAAGTCCAGAAAGATTCTCCGTTATATGAACAAAGTACTATCATT  60
            |||||||||||||||| |||||||||| | ||||| ||||||||| ||||||||||||||
Sbjct  239  ATGGGACAAAATAAACCAGTCCAGAAAAAGTCTCCATTATATGAAGAAAGTACTATCATT  298

Query  61   TTGGCTTCAAGTCAAAATGAAAAACTTGTTGAGACAGAGAAAGAGAAGAGACTTGCGTTG  120
            || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct  299  TTTGCTTCAAGTCAAAATGAAAAACTTGTTGAGATAGAGAAAGAGAAGAGACTTGCGTTA  358

Query  121  ATAGATGCATGGGAAGAGAACGAGAAGGCAAAAGCTCAAACCAAGGCTTACAAAGAACTT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  ATAGATGCATGGGAAGAGAACGAGAAGGCAAAAGCTCAAACCAAGGCTTACAAAGAACTT  418

Query  181  TGCTCCATTGAATCATGGGAGAATAACACGAAGACAGCTCTAGAGTTAGATTTGAAGAAA  240
            ||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct  419  TGCTCGATTGAATCATGGGAAAACAACATGAAGACAGCTCTAGAGTTAGATTTGAAGAAA  478

Query  241  ATGGAGGAGAGTTTAGAAGTGGAGAAAACTGAATACTCaaaaaaattcaagaaaaaaata  300
            |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct  479  ATGGAGGAGAATTTACAAGTGGAGAAAACTGAATTCTCAAAAAAATTCAAGAAAAAAATA  538

Query  301  gctgaaattgagaagattgcagaagctaaaagagaaaaaatagagaaacaaaaggagcaa  360
             ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  539  CCTGAAATTGAGAAGATTGCAGAAGCCAAAAGAGAAAAAATAGAGAAACAAAAGGAGCAA  598

Query  361  gaatctatcaaagtggaaaaaataagtgagaagCTAATTGCAACTCCAAATGCATATCCA  420
            |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  599  GAATCTATCAAAGTCGAAAAAATAAGTGAGAAGCTAATTGCAACTCCAAATGCCTATCCA  658

Query  421  CCCAACACCAAAACCTGTGGATGTTTCTAA  450
            ||||| |||||||| |||||||||||||||
Sbjct  659  CCCAATACCAAAACTTGTGGATGTTTCTAA  688



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21414061074


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5