BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg338056

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G63200.1 | Symbols:  | Cystatin/monellin superfamily protein...   754    0.0  


> AT1G63200.1 | Symbols:  | Cystatin/monellin superfamily protein 
| chr1:23433630-23434600 REVERSE LENGTH=651
Length=651

 Score =  754 bits (408),  Expect = 0.0
 Identities = 485/522 (93%), Gaps = 5/522 (1%)
 Strand=Plus/Plus

Query  1    ATGACTAAGACGGAGAAAGATAAGCCTGAGCTGACACCAGAGCAAGAACTTGCCCTAATG  60
            ||||||| ||||||| |||||||||||||||| ||||||||| ||||||||||||| |||
Sbjct  94   ATGACTAGGACGGAGGAAGATAAGCCTGAGCTCACACCAGAGGAAGAACTTGCCCTTATG  153

Query  61   ACCAAAGAAGTCAATGCTAGCGATGGGTTTGATATAGATTTCAGCTCCTTCCGCTGTGTT  120
            |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| 
Sbjct  154  ACCAAACAAGTCAATGCTAGCGATGGGTTTGATATAGATTTCAGTTCCTTCCTCTGTGTA  213

Query  121  TTCAACTACCATCCTGCTGTTCTCCATTCTGATCAATTCGCTGACGATGACTTTGAAACT  180
            |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct  214  TTCAACTACCATCCTGCTATTCTCCATTCTGATCAATTCGCTGACGATGAGTTTGATACT  273

Query  181  ACTGAGGATTTCCTCAAGATG-CTTGCTCAGGAAGCCCTTGATGTCCACAATGGCAAACA  239
            ||||||||||| ||||||| | |||||||||||||| ||||||| ||||||||||| |||
Sbjct  274  ACTGAGGATTTACTCAAGA-GCCTTGCTCAGGAAGCTCTTGATGACCACAATGGCAGACA  332

Query  240  TGTCACAGAATATGAGTTGGTCAAAGTTGTTAAAGCCAATTATCACTTTGCTTGTGCGAT  299
            || |||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||
Sbjct  333  TGGCACAGAGTATGAGTTTGTTAAAGTTGTTAAAGCCAATTTTCACTTTGCTTGTGCGAT  392

Query  300  TATGTTTCTCATAACATTTCAAGTCAAGGATCCTTATGATGACAAGATTAAGCTCTTCCA  359
             ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct  393  GATGTTTCTCATAACATTTCAAGTCAAGGATCCTTATGATGACATGGTTAAGCTCTTCCA  452

Query  360  AACAAGGGTACGCCAGGGTAAACATATCACTACTAACTATGTCTTCTGCAGGCCCAAACC  419
            ||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct  453  AACAAGGGTACGCCACGGTAAACATATCACTACTAACTATGTCTTCTGCAGACCTAAACC  512

Query  420  CAATCAAGGAGTGGAATACTTTGGGTTCAAGAAAGTTGTCAAGAGAGATATTGAGCAAGT  479
            ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct  513  CAATCAAGGAGTGAAATACTTTGGAATCAAGAAAGTTGTCAAGAGAGATATTGAGCAAGT  572

Query  480  TGTCAAGAGCCATGTTCCGAAAGATGTC---AATAAACAAAA  518
            |||||||||||||||||| |||||||||   || ||||||||
Sbjct  573  TGTCAAGAGCCATGTTCCCAAAGATGTCGTCAAGAAACAAAA  614



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24966371059


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5