BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338071
Length=2076
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63100.1 | Symbols: | GRAS family transcription factor | ch... 2946 0.0
> AT1G63100.1 | Symbols: | GRAS family transcription factor |
chr1:23399391-23401367 REVERSE LENGTH=1977
Length=1977
Score = 2946 bits (1595), Expect = 0.0
Identities = 1861/1985 (94%), Gaps = 35/1985 (2%)
Strand=Plus/Plus
Query 103 ATGTTGGCAGGTTGTTCAAGTTCATCATTGTTGTCGCCGACTCGAAGATTGAGGAGTGAA 162
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTTGGCAGGTTGTTCGAGTTCATCATTGTTGTCGCCTACTCGAAGATTGAGGAGTGAA 60
Query 163 GCAGTAGCAGCAACAACAGCAACAGTATCAGCACATTTTCCTATGAACACACAGAGATTG 222
||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 61 GCAGTAGCAGCAACATCAGCAACAGTATCAGCGCATTTTCCCATGAACACACAGAGATTG 120
Query 223 GACTTACCATGTAGTAGTAGCTTCTCTCGCAAGGAAGCTCCTTCGAACAGACCACTTGGA 282
||||||||||| |||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 121 GACTTACCATGCAGTAGTAGCTTCTCTCGCAAGGAAACTCCTTCTAGCAGACCACTTGGA 180
Query 283 AGAAGCATCTCACTT-------G-----ACAACAACAACAAACCGGTTGAGCGCAAGAC- 329
||||||||||| ||| | ||||||||||||||||| | |||||||||||
Sbjct 181 AGAAGCATCTCTCTTGACAACAGCAACAACAACAACAACAAACCGATCGAGCGCAAGACG 240
Query 330 --G---AGTGGTTGTTCGCTTAAGCAGAACATAAAGCTTCCACCTTTGGCAACAACAAGA 384
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGACCAGTGGTTGTTCGCTTAAACAGAACATAAAGCTTCCACCTTTGGCAACAACAAGA 300
Query 385 GGAAATGGAGAAGGGTTTTCTTGGaacaacgacaacaacaacaacaGAGGGAAGAGTTTG 444
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 GGAAATGGAGAAGGGTTTTCTTGGAACAACG---ACAACAACAACAGAGGGAAGAGTTTG 357
Query 445 AAGAGATTGGCGGAGGAAGACGAGTCTTGTTTGAGCAGAGCGAAGAGGACAAAATGCGAA 504
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AAGAGATTAGCTGAGGAGGACGAGTCTTGTTTGAGCAGAGCGAAGAGGACAAAATGCGAA 417
Query 505 AACGAAGGTGGTTTCTGGTTTGAGCATTTCACTGGCCATGATTCTTCTTCACCAGCATTA 564
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 AACGAAGGTGGTTTCTGGTTTGAGCATTTCACTGGCCAGGATTCTTCTTCACCAGCATTA 477
Query 565 CCTTTTTCTTTGACGTGTTCAGGTGATGATGAGGAAAAGGTTTGCTTTGTGCCTAGTGAA 624
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 478 CCTTTTTCTTTGACTTGTTCAGGTGATGATGAGGAAAAGGTTTGCTTTGTGCCAAGTGAA 537
Query 625 GTCATTTCTCAGCCTTTACCAAACTGGGTTGATTCGGTTATCACGGAGTTGGCTGGTATA 684
|||||||||||||||||||||||||||||||||||||| || |||||| | |||||||||
Sbjct 538 GTCATTTCTCAGCCTTTACCAAACTGGGTTGATTCGGTGATTACGGAGCTAGCTGGTATA 597
Query 685 GGCGATAAGGACGTTGAGAGTAGCCTTCCTGCTGCAGTTAAGGAAGCATCT---GGATCA 741
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 598 GGCGATAAGGACGTTGAGAGTAGCCTTCCTGCAGCAGTTAAGGAAGCATCTGGAGGATCA 657
Query 742 TCGACAAGCGCATCATCAGAGAGTCGTAGCTTAAGCCATAGAGTACCAGAACCTACAAAT 801
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TCTACAAGCGCATCATCCGAGAGTCGTAGCTTAAGCCATAGAGTACCAGAACCTACAAAT 717
Query 802 GGTTCAAGGAATCCTTACACACAGCGCGGCGCAACAGAGGAAAGGACCAGCGGAAACATC 861
|| ||||||||||| ||| |||| ||||| ||||||||||||||||||| ||| || | |
Sbjct 718 GGCTCAAGGAATCCGTACTCACACCGCGGTGCAACAGAGGAAAGGACCACCGG-AA-A-C 774
Query 862 ATCAACAACAACAACAATCACAGGAACGATTTGCAGAGGGATTTCGAGCTTGTCAATTTG 921
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ATCAACAACAACAAC-A--ACAGGAACGATTTGCAGAGGGATTTCGAGCTTGTCAATTTG 831
Query 922 CTTACGGGATGTTTAGAAGCGATCAGATCAAGAAACATCGCGGCGATTAACCATTTCATT 981
||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 832 CTTACGGGATGCTTAGACGCGATCAGATCAAGAAACATAGCAGCGATTAACCATTTCATT 891
Query 982 GCAAGAACCGGTGATCTTGCTTCTCCTAGAGGAAGAACACCAATGACTCGCCTCATAGCT 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GCAAGAACCGGTGATCTTGCTTCTCCTAGAGGAAGAACACCAATGACTCGCCTCATAGCT 951
Query 1042 TATTACATTGAAGCTTTGGCACTAAGAGTCGG-GCGTATGTGGCCTCACATCTTCCACAT 1100
|| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 952 TACTACATTGAAGCTTTGGCTCTAAGAGT-GGCGCGTATGTGGCCTCACATCTTCCACAT 1010
Query 1101 CGCACCACCTCGTGAATTCGACAGAACTGTTGAGGACGAATCAGGAAACGCATTGAGGTT 1160
|||||| |||||||||||||| |||||||| || || ||||||||||| |||||||||||
Sbjct 1011 CGCACCCCCTCGTGAATTCGATAGAACTGTCGAAGATGAATCAGGAAATGCATTGAGGTT 1070
Query 1161 TTTGAATCAAGTAACCCCAATTCCAAAGTTCATCCATTTCACAGCCAATGAGATGTTACT 1220
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1071 CTTGAATCAAGTAACCCCAATTCCAAAGTTCATTCATTTCACAGCCAACGAGATGTTACT 1130
Query 1221 CAGAGCATTTGAAGGGAAAGAGAGGGTTCACATTATCGACTTCGACATCAAGCAAGGTTT 1280
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1131 CAGAGCATTTGAAGGGAAAGAGAGAGTTCACATTATTGACTTCGACATCAAGCAAGGTTT 1190
Query 1281 ACAATGGCCAAGCTTCTTCCAAAGCTTAGCTTCCAG-ATCAAATCCACCACACCATGTAC 1339
||| ||||| ||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 1191 ACAGTGGCCTAGCTTCTTCCAAAGCTTAGCTTCGAGAAT-AAATCCACCACACCATGTAC 1249
Query 1340 GCATCACTGGAATCGGAGAATCAAAACTTGAGCTAAACGAAACCGGAGATCGCCTCCACG 1399
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1250 GAATCACTGGGATCGGAGAATCGAAACTTGAGCTAAACGAAACCGGAGATCGCCTCCACG 1309
Query 1400 GATTTGCAGAGGCGATGAATCTTCAATTCGAGTTTCATCCTGTAGTTGATAGACTTGAAG 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1310 GATTTGCAGAGGCGATGAATCTTCAATTCGAGTTTCATCCTGTAGTTGATAGACTCGAAG 1369
Query 1460 ACGTTAGACTATGGATGCTTCACGTCAAGGAAGGTGAATCAGTAGCTGTAAACTGTGTTA 1519
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1370 ACGTTAGACTATGGATGCTTCACGTCAAAGAAGGTGAATCAGTAGCTGTAAACTGTGTCA 1429
Query 1520 TGCAGATGCACAAGACACTCTACGACGGCACCGGAGCAGCAATTAGGGATTTTTTGGGTT 1579
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1430 TGCAGATGCACAAGACACTCTACGATGGAACCGGAGCAGCAATTAGGGATTTTTTGGGTT 1489
Query 1580 TAATCAGAAGCACGAACCCAATAGCACTCGTTCTTGCGGAACAAGAAGCAGAGCACAACT 1639
||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 1490 TAATCAGAAGCACAAACCCAATAGCTCTCGTTCTTGCGGAGCAAGAAGCAGAACACAACT 1549
Query 1640 CAGAGCAACTCGAGACACGAGTTTGTAACTCGTTAAGGTACTATTCAGCGATGTTTGATG 1699
|||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||
Sbjct 1550 CAGAGCAACTTGAGACACGAGTTTGTAACTCGCTAAAGTACTATTCAGCTATGTTTGATG 1609
Query 1700 CGATTCACACGAATCTTGCAACAGATAGCTTAATCAGAGTCAAAATTGAGGAGATGTTGT 1759
| ||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct 1610 CAATTCACACGAATCTTGCTACAGATAGCTTAATGAGAGTCAAAGTTGAGGAGATGTTGT 1669
Query 1760 TTGGGAGAGAGATCAGGAACATTGTTGCGTGTGAAGGAAGTCATAGGCAAGAGAGGCATG 1819
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1670 TTGGGAGAGAGATCAGGAACATTGTTGCGTGTGAAGGAAGTCATAGACAAGAGAGGCATG 1729
Query 1820 TGGGGTTTCGTCATTGGAAGAGGATGTTGGAGCAGCTAGGGTTTCGGAGTCTTGGAGTCT 1879
|||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1730 TGGGTTTTCGTCATTGGAGGAGGATGTTGGAGCAGTTAGGGTTTCGGAGTCTTGGAGTCT 1789
Query 1880 CGGAGAGAGAGGTTATGCAGAGCAAGATGTTGCTTAGGATGTACGGAAGTGATAATGAAG 1939
|||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1790 CGGAGAGAGAGGTTTTGCAGAGTAAGATGTTGCTTAGGATGTACGGATCTGATAATGAAG 1849
Query 1940 GGTTTTTCAATGTGGAGAGGAGCGGTGAAGACGGCGGAGGAGAAGGCGGACGCGGCGGTG 1999
|||||||||||||||||||||||| ||||||| ||| || |||||||||||||||||||
Sbjct 1850 GGTTTTTCAATGTGGAGAGGAGCGATGAAGACAACGGCGGTGAAGGCGGACGCGGCGGTG 1909
Query 2000 GAGTTACTTTACGGTGGTCGGAGCAGCCACTATACACGATCTCGGCTTGGACTATCGGCG 2059
||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| |
Sbjct 1910 GAGTTACTTTACGGTGGTCGGAGCAGCCACTTTATACGATCTCGGCTTGGACTACCGGAG 1969
Query 2060 G-AAT 2063
| |||
Sbjct 1970 GGAAT 1974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102911117250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5