BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg338077 Length=429 Score E Sequences producing significant alignments: (Bits) Value AT1G63057.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 294 4e-79 AT1G63055.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 233 8e-61 > AT1G63057.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63055.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:23382172-23382989 FORWARD LENGTH=421 Length=421 Score = 294 bits (159), Expect = 4e-79 Identities = 218/246 (89%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 188 ATTCTGATTCTCCTTCTTCTTCA-CTAGATTTTGAT-CT--TTCTTCAAAATCTCCTTCT 243 ||||| ||| |||||| ||||| || ||||||||| | | |||||||||||||||| Sbjct 177 ATTCTCCTTCCCCTTCTCCTTCATCT-GATTTTGATGATAGTGGTTCAAAATCTCCTTCT 235 Query 244 CATTCACCAAAATCAAAAGAAAAATCATCATCATATTGCATGATTGGTTGTTCTTTTGAG 303 | |||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||| Sbjct 236 CCTTCACCAAAATCAAAAGAAAAATCATCAACATATTGCATGATTGGCTGTTCTTTCGAG 295 Query 304 AAGTGCTTTCACCATGGCAAAAGCTCAATGATGAGAACAGGCCATGAGGAAAAGTTTGAG 363 ||||||||||||||||| |||||||||| ||||| ||||||| ||| |||||||| ||| Sbjct 296 AAGTGCTTTCACCATGGAAAAAGCTCAACGATGACAACAGGCGATGTGGAAAAGTATGAC 355 Query 364 TCATGCATGAAAAAATGCTCGAAGATATGCAATAAGAAGAAGGAAAGCGATGATATATAT 423 ||||||||||||||||| |||||||||||||| |||||||| |||| ||| ||||||||| Sbjct 356 TCATGCATGAAAAAATGTTCGAAGATATGCAACAAGAAGAATGAAAACGAGGATATATAT 415 Query 424 GTCTAA 429 |||||| Sbjct 416 GTCTAA 421 Score = 217 bits (117), Expect = 9e-56 Identities = 165/186 (89%), Gaps = 12/186 (6%) Strand=Plus/Plus Query 1 ATGATGAACACAAAGAGTGTAGCCTTGTTAATGGTGGTGATGATGGTAACAATGGGAATG 60 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 71 ATGATGAACACAAAAATTGTAGCCTTGTTAATGGTGGTGATGATGGTAACAATGGGAATG 130 Query 61 GAGAACATTTTGGTTCAGGCACATCGtcatcatcatcatcatcatcattctccttctcct 120 |||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| Sbjct 131 GAGAACATTTTGGTTCAGGC---TCGTCATCATCATCATCATCATCAT-CA--TTCTCCT 184 Query 121 tctccttctccttctccttcACCTGATTTTGATGATATTTTTTCAGAATCTCCTTCTCCT 180 || || || | |||||||| ||||||||||||||| | |||| |||||||||||||| Sbjct 185 TC-CC--CT--T-CTCCTTCATCTGATTTTGATGATAGTGGTTCAAAATCTCCTTCTCCT 238 Query 181 ACACCA 186 ||||| Sbjct 239 TCACCA 244 > AT1G63055.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63057.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:23379665-23380669 FORWARD LENGTH=628 Length=628 Score = 233 bits (126), Expect = 8e-61 Identities = 210/247 (85%), Gaps = 19/247 (8%) Strand=Plus/Plus Query 188 ATTCTGATTCTCCTTCTT-CTTCA-CTAGATTTTGAT-CT--TTCTTCAAAATCTCCTTC 242 ||||| ||| |||| || ||||| || ||||||||| | | ||||||||||||||| Sbjct 172 ATTCTCCTTCCCCTT-TTCCTTCATCT-GATTTTGATGATAGTGGTTCAAAATCTCCTTC 229 Query 243 TCATTCACCAAAATCAAAAGAAAAATCATCATCATATTGCATGATTGGTTGTTCTTTTGA 302 || ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| Sbjct 230 TCCTTCACCAAAATCAAAAGAAAAGTCATCAACATATTGCATGATTGGCTGTTCTTTTGA 289 Query 303 GAAGTGCTTTCACCATGGCAAAAGCTCAATGATGAGAACAGGCCATGAGGAAAAGTTTGA 362 |||||||||||||||||| |||||||||| | | | ||| |||||||| ||| Sbjct 290 GAAGTGCTTTCACCATGGAAAAAGCTCAA-G-------C-G---ATGTGGAAAAGTATGA 337 Query 363 GTCATGCATGAAAAAATGCTCGAAGATATGCAATAAGAAGAAGGAAAGCGATGATATATA 422 | ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| Sbjct 338 CTTATGCATGAAAAAATGTTCGAAGATATGCAACAAGAAGAAGGAAAGCGATGACATATA 397 Query 423 TGTCTAA 429 ||||||| Sbjct 398 TGTCTAA 404 Score = 161 bits (87), Expect = 4e-39 Identities = 111/122 (91%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 ATGATGAACACAAAGAGTGTAGCCTTGTTAATGGTGGTGATGATGGTAACAATGGGAATG 60 ||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 75 ATGGTGAACACAAAAATTGTAGCCTTGTTAATGGTGGTGATGATGGTAACAATGGGAATG 134 Query 61 GAGAACATTTTGGTTCAGGCACATCGtcatcatcatcatcatcatcattctccttctcct 120 ||||||||||||||||||||| |||||| |||||||||| || || ||| |||| |||| Sbjct 135 GAGAACATTTTGGTTCAGGCAAATCGTCGTCATCATCAT--TC-TCCTTCCCCTTTTCCT 191 Query 121 tc 122 || Sbjct 192 TC 193 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20358438345 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5