BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg338077

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G63057.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   294    4e-79
  AT1G63055.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   233    8e-61


> AT1G63057.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G63055.1); Has 
30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr1:23382172-23382989 FORWARD LENGTH=421
Length=421

 Score =  294 bits (159),  Expect = 4e-79
 Identities = 218/246 (89%), Gaps = 5/246 (2%)
 Strand=Plus/Plus

Query  188  ATTCTGATTCTCCTTCTTCTTCA-CTAGATTTTGAT-CT--TTCTTCAAAATCTCCTTCT  243
            |||||  ||| |||||| ||||| || |||||||||  |  |  ||||||||||||||||
Sbjct  177  ATTCTCCTTCCCCTTCTCCTTCATCT-GATTTTGATGATAGTGGTTCAAAATCTCCTTCT  235

Query  244  CATTCACCAAAATCAAAAGAAAAATCATCATCATATTGCATGATTGGTTGTTCTTTTGAG  303
            | |||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||
Sbjct  236  CCTTCACCAAAATCAAAAGAAAAATCATCAACATATTGCATGATTGGCTGTTCTTTCGAG  295

Query  304  AAGTGCTTTCACCATGGCAAAAGCTCAATGATGAGAACAGGCCATGAGGAAAAGTTTGAG  363
            ||||||||||||||||| |||||||||| ||||| ||||||| ||| |||||||| ||| 
Sbjct  296  AAGTGCTTTCACCATGGAAAAAGCTCAACGATGACAACAGGCGATGTGGAAAAGTATGAC  355

Query  364  TCATGCATGAAAAAATGCTCGAAGATATGCAATAAGAAGAAGGAAAGCGATGATATATAT  423
            ||||||||||||||||| |||||||||||||| |||||||| |||| ||| |||||||||
Sbjct  356  TCATGCATGAAAAAATGTTCGAAGATATGCAACAAGAAGAATGAAAACGAGGATATATAT  415

Query  424  GTCTAA  429
            ||||||
Sbjct  416  GTCTAA  421


 Score =  217 bits (117),  Expect = 9e-56
 Identities = 165/186 (89%), Gaps = 12/186 (6%)
 Strand=Plus/Plus

Query  1    ATGATGAACACAAAGAGTGTAGCCTTGTTAATGGTGGTGATGATGGTAACAATGGGAATG  60
            |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct  71   ATGATGAACACAAAAATTGTAGCCTTGTTAATGGTGGTGATGATGGTAACAATGGGAATG  130

Query  61   GAGAACATTTTGGTTCAGGCACATCGtcatcatcatcatcatcatcattctccttctcct  120
            ||||||||||||||||||||   ||||||||||||||||||||||||| |   |||||||
Sbjct  131  GAGAACATTTTGGTTCAGGC---TCGTCATCATCATCATCATCATCAT-CA--TTCTCCT  184

Query  121  tctccttctccttctccttcACCTGATTTTGATGATATTTTTTCAGAATCTCCTTCTCCT  180
            || ||  ||  | |||||||| ||||||||||||||| |  |||| ||||||||||||||
Sbjct  185  TC-CC--CT--T-CTCCTTCATCTGATTTTGATGATAGTGGTTCAAAATCTCCTTCTCCT  238

Query  181  ACACCA  186
             |||||
Sbjct  239  TCACCA  244


> AT1G63055.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G63057.2); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr1:23379665-23380669 FORWARD LENGTH=628
Length=628

 Score =  233 bits (126),  Expect = 8e-61
 Identities = 210/247 (85%), Gaps = 19/247 (8%)
 Strand=Plus/Plus

Query  188  ATTCTGATTCTCCTTCTT-CTTCA-CTAGATTTTGAT-CT--TTCTTCAAAATCTCCTTC  242
            |||||  ||| |||| || ||||| || |||||||||  |  |  |||||||||||||||
Sbjct  172  ATTCTCCTTCCCCTT-TTCCTTCATCT-GATTTTGATGATAGTGGTTCAAAATCTCCTTC  229

Query  243  TCATTCACCAAAATCAAAAGAAAAATCATCATCATATTGCATGATTGGTTGTTCTTTTGA  302
            || ||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||
Sbjct  230  TCCTTCACCAAAATCAAAAGAAAAGTCATCAACATATTGCATGATTGGCTGTTCTTTTGA  289

Query  303  GAAGTGCTTTCACCATGGCAAAAGCTCAATGATGAGAACAGGCCATGAGGAAAAGTTTGA  362
            |||||||||||||||||| |||||||||| |       | |   ||| |||||||| |||
Sbjct  290  GAAGTGCTTTCACCATGGAAAAAGCTCAA-G-------C-G---ATGTGGAAAAGTATGA  337

Query  363  GTCATGCATGAAAAAATGCTCGAAGATATGCAATAAGAAGAAGGAAAGCGATGATATATA  422
             | ||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct  338  CTTATGCATGAAAAAATGTTCGAAGATATGCAACAAGAAGAAGGAAAGCGATGACATATA  397

Query  423  TGTCTAA  429
            |||||||
Sbjct  398  TGTCTAA  404


 Score =  161 bits (87),  Expect = 4e-39
 Identities = 111/122 (91%), Gaps = 3/122 (2%)
 Strand=Plus/Plus

Query  1    ATGATGAACACAAAGAGTGTAGCCTTGTTAATGGTGGTGATGATGGTAACAATGGGAATG  60
            ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct  75   ATGGTGAACACAAAAATTGTAGCCTTGTTAATGGTGGTGATGATGGTAACAATGGGAATG  134

Query  61   GAGAACATTTTGGTTCAGGCACATCGtcatcatcatcatcatcatcattctccttctcct  120
            ||||||||||||||||||||| |||||| ||||||||||  || || ||| |||| ||||
Sbjct  135  GAGAACATTTTGGTTCAGGCAAATCGTCGTCATCATCAT--TC-TCCTTCCCCTTTTCCT  191

Query  121  tc  122
            ||
Sbjct  192  TC  193



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20358438345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5