BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg338097

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G55480.2 | Symbols: PAT2 | protein affected traffickin...   405    1e-112


> AT3G55480.2 | Symbols: PAT2 | protein affected trafficking 
2 | chr3:20566248-20571248 REVERSE LENGTH=3549
Length=3549

 Score =  405 bits (219),  Expect = 1e-112
 Identities = 297/334 (89%), Gaps = 7/334 (2%)
 Strand=Plus/Plus

Query  33    GTTTTTATCTTCCTGGATCTATATCACAGATAGTTCTTCATGCAGCCCCTGGATACGAAC  92
             |||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct  2122  GTTTTTATCTTCCTGGATCTCTGTCACAGATAGTTCTTCATGCAGCCCCTGGATATGAAC  2181

Query  93    ATCTTCCAAAGCC-TGCAGTTTTGTTTTTGAAGAACAAGACCAGCTGTCAGATTTAGACA  151
              |||||||||||| ||||||||||| | ||||||||| |||||||||||||||||||| |
Sbjct  2182  CTCTTCCAAAGCCCTGCAGTTTTGTGTATGAAGAACAGGACCAGCTGTCAGATTTAGATA  2241

Query  152   GACAAAGAGAGGCCGCAGCTGTTTTAGATGATTCTCG-GGAATCATCTGAAACAGTGGAT  210
              |||||||||||||||||||| |||||||| |||| | |||||| |||||||||| ||||
Sbjct  2242  AACAAAGAGAGGCCGCAGCTGATTTAGATGGTTCT-GAGGAATCCTCTGAAACAGGGGAT  2300

Query  211   GACGA-TGGCTCCTCTGATTATGACTCTGAATCTTCTATTGATTCAGATTGCAGCAGTGA  269
             || || |||||||||||||||||||||||||||||||| || ||| ||||  ||||||||
Sbjct  2301  GA-GAATGGCTCCTCTGATTATGACTCTGAATCTTCTAATGGTTCGGATTTTAGCAGTGA  2359

Query  270   CGGTGATGAAAGAACAGTGTCTAATGGTGTCAATGATCCAGGTGCTCCTTTAATTCAAAT  329
              |||||||||||||||||||||||||  | |||||| |||| ||||||||||||||||||
Sbjct  2360  AGGTGATGAAAGAACAGTGTCTAATGACGCCAATGACCCAGCTGCTCCTTTAATTCAAAT  2419

Query  330   TTCTGTGACTTCGGTTTTCAATGACCCAG-AAGA  362
             ||| | |||||| |||| |  ||||| || ||||
Sbjct  2420  TTCAGAGACTTCTGTTTCCGCTGACC-AGGAAGA  2452



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17191570158


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5