BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338115
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55675.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 148 4e-35
> AT1G55675.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:20803704-20804573
REVERSE LENGTH=870
Length=870
Score = 148 bits (80), Expect = 4e-35
Identities = 132/157 (84%), Gaps = 3/157 (2%)
Strand=Plus/Plus
Query 225 TCTATGCCGATGT-TCTTCGGAGTTCGGGAATCAATTGCCTTTGGGAGGAT-GTTTCCTT 282
||| ||||| ||| | || ||| ||||||||||||||| |||| ||| ||| ||| |||
Sbjct 488 TCTGTGCCGCTGTGTTTTTGGAATTCGGGAATCAATTGTCTTTTGGAAGATCCTTT-CTT 546
Query 283 TGCAGATTCGATGATGAAAATTGGTGGGATTCTCTAATTAAAAACCGATGGACTTCTTTG 342
|||| ||| |||||||| ||| ||||||||||||||||||||||||||||||||| ||
Sbjct 547 TGCAAATTTGATGATGATGTTTGTTGGGATTCTCTAATTAAAAACCGATGGACTTCTGTG 606
Query 343 CTTGAAGCTCTGGCGGTTTCCGGTGGTTTTGGAGTTT 379
|| ||| ||| || ||||||||||| ||||||||||
Sbjct 607 TTTAAAGTTCTAGCTGTTTCCGGTGGCTTTGGAGTTT 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24212858854
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5