BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg338140

Length=705
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G62410.1 | Symbols:  | MIF4G domain-containing protein | chr...   322    3e-87


> AT1G62410.1 | Symbols:  | MIF4G domain-containing protein | chr1:23092915-23093869 
FORWARD LENGTH=672
Length=672

 Score =  322 bits (174),  Expect = 3e-87
 Identities = 368/456 (81%), Gaps = 35/456 (8%)
 Strand=Plus/Plus

Query  80   AGCGTGTGACAACCCTTATTTTCAACAAAGCCA-TCCTTGAGCCGACATTTTGCCCGATG  138
            ||||| ||||||||||||||||| |||||| || ||||||||||||| |||||||| |||
Sbjct  32   AGCGTTTGACAACCCTTATTTTCGACAAAG-CAGTCCTTGAGCCGACCTTTTGCCCTATG  90

Query  139  TACGCTCAATTAAGCTGCGATATCTGTGACAGAATGCCGACTTTTCCA---T------CT  189
            |||||||||||  |||  |||||| |  ||| |||||| |  ||||||   |      ||
Sbjct  91   TACGCTCAATTGTGCTTTGATATCCGCCACAAAATGCCTAGGTTTCCACCTTCAGCGCCT  150

Query  190  -AG--T-A--AAATCACATTCAAGAGGGTTTTGCTGAATACAAT-TCAAAATGTGTTTGA  242
             ||  | |  | ||| |||||||||||||||||||||| ||| | |||||| ||||||||
Sbjct  151  AAGACTGATGAGATCTCATTCAAGAGGGTTTTGCTGAACACA-TGTCAAAAGGTGTTTGA  209

Query  243  GGGAACCGATGAATTAAGCGATGAGATTAGAAAGATGAACTCGCCAGATCAGAAGGAAGA  302
            | |||| || || ||||| || |||||||||||||||||| ||||||||||| |||  ||
Sbjct  210  GAGAACTGACGACTTAAGTGAGGAGATTAGAAAGATGAACGCGCCAGATCAGGAGGCCGA  269

Query  303  ACGGAGA-GAC-ATGGAAAGGTTGTCTAAAC-TCCGAACTCTAGGAAATCTTCGTTTTTG  359
            |||| || ||| | | || |  ||| | ||| |||| |||||||||||||||||||||||
Sbjct  270  ACGG-GAAGACGAAGTAA-GACTGT-TGAACCTCCGGACTCTAGGAAATCTTCGTTTTTG  326

Query  360  TGGTGAGCTATTTTTAAAGCGGAAGATTC-CAGAAAAGATTGTTC-ACCACATTGTTCAG  417
            ||||||||| ||||| ||||||| | ||  |||||||| |||||  | | ||||| ||||
Sbjct  327  TGGTGAGCTTTTTTTGAAGCGGATG-TTGACAGAAAAGGTTGTTTTAGC-CATTGGTCAG  384

Query  418  GAA-CTTCTGGGGGCTGATGAGAAAATGTGTCCATCAGAGGAAAACCTTGA-AGC-AGTC  474
             || ||| ||| || || |||| ||||||||||||||||||||||  || | ||| | | 
Sbjct  385  -AAGCTTTTGGAGGATGCTGAGCAAATGTGTCCATCAGAGGAAAAAATT-ATAGCTATT-  441

Query  475  TGTCTCTTTCTCAAGACTGTCGGCAAAAAGCTTGAT  510
            |||||||||||||| ||||| |||||||||||||||
Sbjct  442  TGTCTCTTTCTCAACACTGTTGGCAAAAAGCTTGAT  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34159219960


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5