BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338146
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62360.1 | Symbols: STM, BUM1, SHL, WAM1, BUM, WAM | KNOX/EL... 1544 0.0
AT1G07950.1 | Symbols: MED22B | Surfeit locus protein 5 subunit... 71.3 2e-11
> AT1G62360.1 | Symbols: STM, BUM1, SHL, WAM1, BUM, WAM | KNOX/ELK
homeobox transcription factor | chr1:23058582-23061722 REVERSE
LENGTH=1363
Length=1363
Score = 1544 bits (836), Expect = 0.0
Identities = 902/935 (96%), Gaps = 0/935 (0%)
Strand=Plus/Plus
Query 65 CTCCTCCCCAAGGAACTAAGAACAAAGTCGCTTCTTCTTCTTCTCCTTCCTCTTGTGCTC 124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 215 CTCCTCCCCAAGGAACTAAGAACAAAGTTGCTTCTTCTTCTTCTCCTTCCTCTTGTGCTC 274
Query 125 CTGCTTATTCCCTAATGGAGATCCATCATAACGAAATCGTTGCCGGAGGGATCAACCCTT 184
|||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 275 CTGCCTATTCTCTAATGGAGATCCATCATAACGAAATCGTTGCAGGAGGAATCAACCCTT 334
Query 185 GCTCCTCTTCCTCTTCTTCGGCCTCTGTCAAGGCCAAGATCATGGCTCATCCTCACTACC 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 335 GCTCCTCTTCCTCTTCTTCAGCCTCTGTCAAGGCCAAGATCATGGCTCATCCTCACTACC 394
Query 245 ACCGCCTCTTGGCCGCTTATGTCAATTGTCAGAAGGTTGGAGCACCACCGGAGGTTGTGG 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 ACCGCCTCTTGGCCGCTTATGTCAATTGTCAGAAGGTTGGAGCACCACCGGAGGTTGTGG 454
Query 305 TGAGACTGGAGGAGGCATGCTCGTCTGCGGCCGCCGCCGCCGCATCGATGGGACCAACAG 364
||| || |||||||||||||||||||| || ||||| |||||||| |||||||||||||
Sbjct 455 CGAGGCTAGAGGAGGCATGCTCGTCTGCCGCAGCCGCTGCCGCATCTATGGGACCAACAG 514
Query 365 GGTGTCTAGGTGAAGATCCAGGGCTTGATCAATTTATGGAAGCTTACTGTGAAATGCTTG 424
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 515 GATGTCTAGGTGAAGATCCAGGGCTTGATCAATTCATGGAAGCTTACTGTGAAATGCTCG 574
Query 425 TTAAGTATGAGCAAGAGCTCTCCAAACCATTCAAGGAAGCTATGGTCTTCCTTCAACGTG 484
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 575 TTAAGTATGAGCAAGAGCTCTCCAAACCTTTCAAGGAAGCTATGGTCTTCCTTCAACGTG 634
Query 485 TCGAGTGTCAATTCAAATCCCTCTCTCTATCCTCACCTTCCTCTTTCTCCGGTTATGGAG 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 TCGAGTGTCAATTCAAATCCCTCTCTCTATCCTCACCTTCCTCTTTCTCCGGTTATGGAG 694
Query 545 AGACAGCAATTGATAGGAACAATAATGGGTCATCGGAGGAAGAAGTCGATATGAATAATG 604
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 695 AGACAGCAATTGATAGGAACAATAATGGGTCATCCGAGGAAGAAGTCGATATGAACAATG 754
Query 605 AATTTGTAGATCCGCAAGCTGAGGATAGGGAGCTTAAAGGACAGCTCTTGCGCAAGTACA 664
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 755 AATTTGTAGATCCACAAGCTGAGGATAGAGAGCTTAAAGGACAGCTCTTGCGCAAGTACA 814
Query 665 GTGGTTACTTAGGGAGCCTCAAACAAGAGTTCATGAAGAAGAGGAAGAAAGGAAAGCTCC 724
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 815 GTGGTTACTTAGGGAGCCTCAAGCAAGAGTTCATGAAGAAGAGGAAGAAAGGAAAGCTCC 874
Query 725 CTAAAGAAGCTCGCCAACAATTGCTTGATTGGTGGAGCCGCCACTACAAATGGCCTTACC 784
||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 875 CTAAAGAAGCTCGTCAACAACTGCTTGATTGGTGGAGCCGTCACTACAAATGGCCTTACC 934
Query 785 CTTCGGAGCAACAGAAGCTCGCGCTGGCGGAATCAACAGGGCTGGACCAGAAACAGATAA 844
||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 935 CTTCGGAGCAACAAAAGCTCGCCCTTGCGGAATCAACGGGGCTGGACCAGAAACAGATAA 994
Query 845 ACAATTGGTTCATAAACCAGAGGAAACGGCATTAGAAGCCATCTGAGGATATGCAGTTTG 904
||||||||||||||||||||||||||||||||| |||||| || ||||| ||||||||||
Sbjct 995 ACAATTGGTTCATAAACCAGAGGAAACGGCATTGGAAGCCGTCGGAGGACATGCAGTTTG 1054
Query 905 TAGTAATGGACGCAACACATCCTCACCATTACTTCATGGATAATGTCTTGGGCAATCCTT 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TAGTAATGGACGCAACACATCCTCACCATTACTTCATGGATAATGTCTTGGGCAATCCTT 1114
Query 965 TCCCAATGGATCACATCTCCTCCACCATGCTTTGA 999
|||||||||||||||||||||||||||||||||||
Sbjct 1115 TCCCAATGGATCACATCTCCTCCACCATGCTTTGA 1149
Score = 115 bits (62), Expect = 8e-25
Identities = 64/65 (98%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAGTGGTTCCAACAGCACTTCTTGTCCAATGGCTTTTGCCGGGGATAATAGTGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAGTGGTTCCAACAGCACTTCTTGTCCAATGGCTTTTGCCGGGGATAATAGTGAT 60
Query 61 GCTCC 65
| |||
Sbjct 61 GGTCC 65
> AT1G07950.1 | Symbols: MED22B | Surfeit locus protein 5 subunit
22 of Mediator complex | chr1:2465770-2467022 REVERSE LENGTH=796
Length=796
Score = 71.3 bits (38), Expect = 2e-11
Identities = 41/42 (98%), Gaps = 1/42 (2%)
Strand=Plus/Plus
Query 834 GAAACAGAT-AAACAATTGGTTCATAAACCAGAGGAAACGGC 874
||||||||| ||||||||||||||||||||||||||||||||
Sbjct 532 GAAACAGATAAAACAATTGGTTCATAAACCAGAGGAAACGGC 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48928059178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5