BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338156
Length=3732
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62260.1 | Symbols: MEF9 | mitochondrial editing factor 9 | ... 2928 0.0
AT1G62262.1 | Symbols: SLAH4 | SLAC1 homologue 4 | chr1:2300015... 1663 0.0
AT1G62250.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 1171 0.0
AT1G62280.1 | Symbols: SLAH1 | SLAC1 homologue 1 | chr1:2300714... 1085 0.0
AT1G05061.1 | Symbols: | Pseudogene of AT2G32630; pentatricope... 54.7 6e-06
> AT1G62260.1 | Symbols: MEF9 | mitochondrial editing factor 9
| chr1:22997826-22999796 REVERSE LENGTH=1971
Length=1971
Score = 2928 bits (1585), Expect = 0.0
Identities = 1823/1939 (94%), Gaps = 12/1939 (1%)
Strand=Plus/Plus
Query 1070 GGAAGGTGTTGTATCGATCGTCTTGTCTAAAGTGTTTA-TATGT--AAACTCTTTCTCTA 1126
||||||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||
Sbjct 35 GGAAGGTGTTGTATCAATCGTCTTGTCTTAAGTGTTTATTATGTGCAAACTCTTTCTCTA 94
Query 1127 CTTCAGTCTCGTCAAGCTTGGGTTTTCGAGCGACGAACAAAGAGTTAAACCAGATGATAA 1186
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 CTTCAGTTTCGTCAAGCTTGGGTTTTCGAGCGACGAACAAAGAGTTAAACCAGATGATAA 154
Query 1187 GATCGGGATATATCTTTGAAGCTAGAGAGATTTTCGAGAAATTGGAAGCGAGGAACATC- 1245
||||||| |||||| ||||||||||| ||||| |||||| ||||||||||||||| |
Sbjct 155 GATCGGGGTATATCGCCGAAGCTAGAGATATTTTTGAGAAACTGGAAGCGAGGAACA-CA 213
Query 1246 GTGACATGGAATACGATGATAAGCGGGTATGTGAAAAGGCGGGAAATGACGCAAGCACGG 1305
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 214 GTGACATGGAATACGATGATAAGCGGGTATGTGAAAAGGCGTGAAATGAATCAAGCACGG 273
Query 1306 AAACTGTTCGACGAAATGCCTGAGAGAGATGTTGTGACTTGGAACGCGATGATTTCGGGT 1365
||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 274 AAACTGTTCGACGTAATGCCTAAGAGAGATGTTGTGACTTGGAACACGATGATTTCGGGG 333
Query 1366 TATGTTTCATGTGGTGGGATTAGGTTTCTTGAAGAAGCAAGGAAGCTGTTTGATGAAATG 1425
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 334 TATGTTTCATGTGGTGGGATTAGGTTTCTTGAGGAAGCAAGGAAGCTGTTTGATGAAATG 393
Query 1426 CCTTCAAGAGATTCTTTTTCTTGGAACACGATGATCAGTGGGTATGCTAAGAATCGGAGG 1485
|||||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 394 CCTTCAAGGGATTCTTTTTCATGGAACACTATGATTAGTGGTTATGCGAAGAATCGGAGG 453
Query 1486 ATAAGTGAAGCGTTGTTGTTATTTGAGAAAATGCCTGAGAGAAATGCTGTGTCATGGAGT 1545
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 454 ATAGGTGAAGCGTTGTTGTTATTTGAGAAAATGCCTGAGAGAAATGCAGTGTCATGGAGT 513
Query 1546 GCTATGATCACTGGTTTTTGTCATAATGGTGAAGTGAACCGCGCGTTTGAT-TTGTTTCG 1604
|||||||||||||| |||||||| || ||||||||| | ||||| ||| | ||||||||
Sbjct 514 GCTATGATCACTGGGTTTTGTCAGAACGGTGAAGTGGATAGCGCGGTTG-TGTTGTTTCG 572
Query 1605 GAGAATGCCTGTGAAGGATTCGTCTTCTCTATGTGCACTTGTGGCTGGTCTTATTAAAAA 1664
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 573 GAAAATGCCTGTGAAGGATTCGTCTCCTCTATGTGCACTTGTGGCTGGTCTTATTAAAAA 632
Query 1665 CGAGAGACTTGAAGAAGCTGCTTGGGTTTTGGGTCAGTATGGGAGTTTAGATTCAGGAAG 1724
|||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 633 CGAGAGACTTTCAGAAGCTGCGTGGGTTTTGGGTCAGTATGGGAGTTTAGTTTCAGGAAG 692
Query 1725 GGAAGATTTGGTTTATGCTTATAACACTTTGATTGTAGGATATGGACAGAGAGGACAGGT 1784
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 693 GGAAGATTTGGTGTATGCTTATAACACTTTGATTGTTGGATATGGACAGAGAGGACAAGT 752
Query 1785 AGAAGCAGCTCGATGTCTGTTTGATCAGATTCCTGATCTCTGTGATGATGATGATCATAG 1844
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct 753 AGAAGCAGCTCGATGTCTGTTTGATCAGATTCCTGATCTCTGTG--G-TGATGATCAT-G 808
Query 1845 G-GGAGCGTTTAGAGAGAGGTTCCGTAGAAATGTCGTGTCATGGAATTCTATGATCAAAG 1903
| |||| |||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 809 GTGGAGAGTTTAGAGAGAGGTTCTGTAAAAATGTTGTGTCATGGAATTCTATGATCAAAG 868
Query 1904 CTTATTTGAAAGTGGGTGATGTGGTCTCTGGGCGGTTACTATTTGATCAGATGAAAGACC 1963
|||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 869 CTTACTTGAAAGTGGGTGATGTGGTCTCTGCAAGGTTGCTATTTGATCAGATGAAAGACC 928
Query 1964 GCGATACAATTTCTTGGAACACTATGATTGATGGATATGTACATGTTTCTAGGATGGAAG 2023
|||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 929 GCGATACAATTTCTTGGAACACAATGATTGATGGATACGTACATGTTTCCAGGATGGAAG 988
Query 2024 ATGCTTTTGCTCTGTTTTCGGAAATGCCAAACCGTGATGCACACTCATGGAACATGATGG 2083
|||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 989 ATGCTTTTGCTCTGTTTTCGGAAATGCCGAACCGTGATGCACATTCGTGGAACATGATGG 1048
Query 2084 TCTCGGGTTATGCTAGTGTTGGCAATCTAGAGCTTGCTCGACACTACTTTGAAAAAACAC 2143
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1049 TCTCGGGTTATGCTAGTGTTGGCAATGTAGAGCTTGCTCGCCACTACTTTGAAAAAACAC 1108
Query 2144 CTGAGAAAAATATAGTCTCGTGGAACTCGATTATAGCAGCTTATGACAAAAACAAGGACT 2203
|||||||| ||| |||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1109 CTGAGAAACATACAGTCTCGTGGAACTCGATAATAGCAGCTTATGAGAAAAACAAGGACT 1168
Query 2204 ACAAAGAAGCTGTTGATGTGTTTATCCGGATGAACATTGATGGAGAGAAGCCTGACCCGC 2263
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1169 ACAAAGAAGCTGTTGATTTGTTTATCCGGATGAACATTGAAGGAGAGAAGCCTGACCCAC 1228
Query 2264 ATACTTTAACTTCTCTTCTCAGTGTATCTACCGGGCTTGTGAATCTACGTTTAGGAATGC 2323
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1229 ATACTTTAACTTCTCTTCTCAGTGCATCTACCGGGCTTGTGAATCTGCGTTTAGGAATGC 1288
Query 2324 AGATGCACCAAATCGTTGTCAAGACTGTGATCCCCGATGTTCCAGTCCACAATGCCCTTA 2383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 AGATGCACCAAATCGTTGTCAAGACTGTGATCCCCGATGTTCCAGTCCACAATGCCCTTA 1348
Query 2384 TCACTATGTATTCAAGATGCGGTGAAATAATGGAGTCGAGGAGAATCTTCGATGAAATGA 2443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 TCACTATGTATTCAAGATGCGGTGAAATAATGGAGTCGAGGAGAATCTTCGATGAAATGA 1408
Query 2444 AACTCAAAAGAGAAGTAATCACATGGAATGCAATTATAGGAGGATATGCCTTTCATGGTA 2503
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1409 AACTCAAAAGAGAAGTAATCACATGGAATGCAATGATAGGAGGATATGCATTTCATGGTA 1468
Query 2504 ATGCCTCAGAGGCCTTGAATCTGTTTTGGTCAATGAAATGCTACGGGATACATCCTTCTC 2563
||||||||||||||||||||||||| |||| |||||| || |||||||| |||||||||
Sbjct 1469 ATGCCTCAGAGGCCTTGAATCTGTTCGGGTCGATGAAAAGCAACGGGATATATCCTTCTC 1528
Query 2564 ACATAACATTCGTCTCAGTTCTGAACGCTTGTGCTCACGCGGGACTTGTTGATGAGGCTA 2623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 ACATAACATTCGTCTCAGTTCTGAACGCTTGTGCTCACGCGGGACTTGTTGATGAGGCTA 1588
Query 2624 AAGAACAGTTTTTGTCCATGATGAGTGTGTACAAGATTGAGCCGCAGATGGAACATTATT 2683
||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1589 AAGCACAGTTTGTGTCCATGATGAGTGTGTACAAGATCGAGCCGCAGATGGAACATTATT 1648
Query 2684 CCTCACTGGTCAATGTAATCAGTGGACAAGGGCAGTTTGAGGAGGCCATATATGTGATAA 2743
| || |||||||| || | ||||||||||||||||||||| |||||||| ||| | ||||
Sbjct 1649 CTTCCCTGGTCAACGTTACCAGTGGACAAGGGCAGTTTGAAGAGGCCATGTATATCATAA 1708
Query 2744 AGAGTATGCCTTTTGAGCCAGACAAGACGGTGTGGGGTGCACTATTAGATGCTTGTAGGA 2803
|||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||
Sbjct 1709 CGAGTATGCCTTTTGAGCCAGACAAAACGGTATGGGGTGCATTATTGGATGCTTGTAGGA 1768
Query 2804 TTTATAACAATGTAGGGCTCGCACATGTTGCAGCAGAAGCAATGTCGAGACTTGAACCAG 2863
| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 1769 TATATAACAATGTAGGGCTTGCACATGTTGCAGCTGAAGCAATGTCGAGACTCGAACCAG 1828
Query 2864 AGAGCTCAACACCTTATGTACTGTTGCACAACATGTACGCGGATATGGGACTATGGGACG 2923
||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 1829 AGAGCTCAACACCTTATGTACTGTTATATAACATGTATGCGGATATGGGACTATGGGACG 1888
Query 2924 AAGCTTCTCAAGTGAGAATGAACATGGAGAGTAAAAGAATCAAGAAGGAGAGAGGATCTA 2983
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1889 AAGCTTCTCAAGTGAGAATGAACATGGAGAGTAAAAGAATCAAGAAGGAAAGAGGATCCA 1948
Query 2984 GTTGGGTTGACTCTTCAAC 3002
||||||||||||| |||||
Sbjct 1949 GTTGGGTTGACTCCTCAAC 1967
> AT1G62262.1 | Symbols: SLAH4 | SLAC1 homologue 4 | chr1:23000157-23002093
REVERSE LENGTH=1520
Length=1520
Score = 1663 bits (900), Expect = 0.0
Identities = 1017/1074 (95%), Gaps = 6/1074 (1%)
Strand=Plus/Plus
Query 1 ATGGAAATTCCTAGTCAAGAAATTCATATCAAGATTGATAACCCAAGATC-AAGCAGCAA 59
|||||||| ||||||||||||||||| |||| |||||||||| ||| ||| | || ||||
Sbjct 262 ATGGAAATACCTAGTCAAGAAATTCACATCATGATTGATAACACAATATCGAGGC-GCAA 320
Query 60 CA-AGAGAAAGACTAACCTCGCTGATGCCGAACCCATTGTCCTGATGTCTGTTTTGAGTA 118
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 321 -AGAGAGAAAGACTAACCTCGCAGATGCCGAACCCATTGTCCTGATGTCTGTTTTGAGTA 379
Query 119 GTCTCCATGCGGGATATTTCAGAATAAGTCTTTCTCTATGTAGCCAAGCATTGTTGTGGA 178
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 380 GTCTCCATGCGGGATATTTCAGAATAAGCCTTTCTCTATGTAGCCAAGCATTGTTGTGGA 439
Query 179 AGATAATGGTCCATTTGCATAGCGAACTCCCGTCTATGGCATATTATCTCTTGTGGTACC 238
|||| ||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 440 AGATTATGGTGCATTTGCATAGCGAACTCCCGTCTATGGCGTATTATCTCCTGTGGTACC 499
Query 239 TAGCACTTGCAACACAAGTATCACTCTGTTTATTGTATGCCTTCAAGTGTATTTTCCTCT 298
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 500 TAGCACTTGCAACACAAGTATCACTCTGTTTTTTGTATGCCTTCAAGTGTATTTTTCTCT 559
Query 299 TTGACATGGTGAAGGAAGAGTTCTTGCACTATATTGGAGTGAACTATCTTTACGCTCCAT 358
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 560 TTGACATGGTGAAGGAAGAGTTCTCGCACTATATTGGAGTGAACTATCTTTACGCTCCAT 619
Query 359 CCATTTCATGCCTTCTATTGCTTCAATCAGCTCCGATGATCA-AACCACATAGCGTTTTG 417
|||||||||| ||||||||||||||||||||||| ||||| | ||||||| ||||||||
Sbjct 620 CCATTTCATGTCTTCTATTGCTTCAATCAGCTCCTATGAT-AGAACCACACAGCGTTTTA 678
Query 418 TATCAGACACTATTCTGGATCTTTGTTGTCCCAGTCTTGACCCTAGACACAAAGCTTTAT 477
||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 679 TATCAGACACTATTCTGGATCTTTGCTGTTCCAGTCTTGACTTTAGACACAAAGCTTTAT 738
Query 478 GGACAATGGTTCACAACAGAGAAAAGGTTTTTGTCGATAATGGCAAACCCGGCAAGCCAA 537
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 739 GGTCAATGGTTCACAACAGAGAAAAGGTTTTTATCGATAATGGCAAACCCGGCAAGCCAA 798
Query 538 GTATCAGTAATCGCAAACCTAGTGGCTGCAAGGGGAGCAGCAGAGATGGGTTGGAAAGAG 597
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 799 GTATCGGTAATCGCAAACCTAGTGGCTGCGCGGGGAGCAGCAGAGATGGGTTGGAAAGAG 858
Query 598 TGTGCTCTATGCTTGTTCTCACTTGGGATGGTTCATTATTTGGTTATCTTTGTCACACTT 657
|||||||||||||| ||||||||||| |||||||| |||||||| |||||||| ||||||
Sbjct 859 TGTGCTCTATGCTTATTCTCACTTGGAATGGTTCACTATTTGGTCATCTTTGTTACACTT 918
Query 658 TATCAACGCTTACCAGGCGGAAACAATTTCCCAACCACGCTAAGACCGGTTTTCTTCTTG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 TATCAACGCTTACCAGGCGGAAACAATTTCCCAACCACGCTAAGACCGGTTTTCTTCTTG 978
Query 718 TTTTTCGCTGCACCAGCGACTGCAAGTCTAGCTTGGAACTCTATTTGTGGAACCTTTGAT 777
|||||||||||||| || || ||||||||||||||||||||||||||||||| |||||||
Sbjct 979 TTTTTCGCTGCACCCGCCACAGCAAGTCTAGCTTGGAACTCTATTTGTGGAAACTTTGAT 1038
Query 778 ACTATAGCCAAGATGTTATTCTTCCTTTCACTCTTCATCTTTATGTCCCTGGTTTGTAGG 837
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 1039 ACTATAGCCAAGATGTTATTCTTCCTTTCACTCTTCATCTTCATATCTCTGGTTTGTAGG 1098
Query 838 CCAAATCTTTTGAAGAAGTCGATAAAAAGATTCAATGTCGCGTGGTGGGCTTACTCATTC 897
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1099 CCAAATCTTTTGAAGAAGTCGATAAAAAGATTCAATGTCGCATGGTGGGCTTACTCGTTT 1158
Query 898 CCTATCACATTTCTTGCTTTAGACTCGGTTCAGTACGCGCAAGAGGTGAAAGACCATGTC 957
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1159 CCTATCACATTTCTCGCTTTAAACTCGGTTCAGTACGCGCAAGAGGTGAAAGACCATGTC 1218
Query 958 GCTTCGGTCTTGATGTTTATCTTCTCATCCATCTCAGTTTTGATATTCTTTGGTGTGATG 1017
|||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 1219 GCTTCGGTCTTGATGTTTATCTTCTCATCCATGTCAGTTTTGATATTCATCAGTGTGATG 1278
Query 1018 TTACTGACAGCAGCAAACAGCAAAAGATTACTCAGACGTGATCATGTCCTCTGG 1071
||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1279 TTACTGACAGCAGCAAATAGCAAAAGATTACTTAGACGTGATCATGTCCTCTGG 1332
> AT1G62250.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING:
15 growth stages; Has 30 Blast hits to 30 proteins in 13 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:22995437-22997613 REVERSE LENGTH=1197
Length=1197
Score = 1171 bits (634), Expect = 0.0
Identities = 699/731 (96%), Gaps = 2/731 (0%)
Strand=Plus/Plus
Query 3003 ATTCAAGACCGT-GCCTTTTGGTCCTCTGATTAGTTGTTCTGTCTCTTCAAGATCCATAG 3061
|||||||||| | ||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 290 ATTCAAGACC-TCGCCTTTTGGTCCTCTGATTAGTTGTTCTGTCTCCCCAAGATCAATAG 348
Query 3062 TTCCTTGTAGGAATGTGGACTGTTATCATTCATCTTTTTCTCCAAAAGGTCAAATTCAGC 3121
|||||||||| ||||| || ||||||||||||||||||||| ||||| |||||||||||
Sbjct 349 TTCCTTGTAGCAATGTAGAGTGTTATCATTCATCTTTTTCTACAAAATATCAAATTCAGC 408
Query 3122 CTCGAAGGAAATGGATGTTTTGTAACTCACGCAACAACTCGATTTCGTCGGATGATGAGT 3181
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 409 CTCGAAGGAGATGGATGTTTTGTAACTCACGCAACAACTCGATTTCATCGGATGATGAGT 468
Query 3182 ACCGTTCATCACGCAACATAGCTATAAGTCTTTTAAGACGTTACAGGACCGTGATTGGAC 3241
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 ACCGTTCATCACCCAACATAGCTATAAGTCTTTTAAGACGTTACAGGACCGTGATTGGAC 528
Query 3242 GTGGTGAAGGCGAAACCTTAAAAGAATTCATATCCGCTGGTGTTAATGCATATGCGCTCG 3301
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 529 GCGGTGAAGGCGAAACCTTAAAAGAATTCATATCCGCTGGTGTGAATGCATATGCGCTCG 588
Query 3302 GTTGCACAGATGAAGATTTGAGAAAAGAACTAATGGCTATGAAAGATTCGGGTTTAGAGA 3361
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GCTGCACAGATGAAGATTTGAGAAAAGAACTAATGGCTATGAAAGATTCGGGTTTAGAGA 648
Query 3362 TTGAAAGAATGGAGAGTTACGGCGGAAGCACACAGACTAAATCCAAAATTTTGCTGTCCG 3421
|||| |||||||||| |||||||||||||||||||||||||||||||||| |||||| |
Sbjct 649 TTGAGAGAATGGAGAATTACGGCGGAAGCACACAGACTAAATCCAAAATTACGCTGTCTG 708
Query 3422 AGGTAGATGAATGCATATTGTGGCTTAGGATTGTATTCATCACGATCTTGTGTACACCGC 3481
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 709 AGGTAGATGAATGCATATTGTGGCTTAGGATTGTATTCATCACGATCTTGTGTACGCCGC 768
Query 3482 AACCAACAGTCATAAGATGGTCATCGACTCCTTCGGTTTCTGATGAAATTCTAAGCAAAT 3541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AACCAACAGTCATAAGATGGTCATCGACTCCTTCGGTTTCTGATGAAATTCTAAGCAAAT 828
Query 3542 GGAGAGGCTTTTGCGCGGTTATAGCCAATGCATACTATATTAGAGGAATGGCATGGCTGC 3601
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 829 GGAGAGGCTTTTGCGCGGTTATAGCAAATGCATACTATATTAGAGGAATGGCTTGGCTGC 888
Query 3602 CGGTGAAGACTCTTCAGTTGGAGCAGATGGCGGTGACAGGACAAGCGGAGGAGCCGTCGG 3661
| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 889 CTGTGAAGACTCTTCAGTTGGAGCAGATGGCGGTGACAGGACAATCAGAGGAGCCGTCCG 948
Query 3662 TTGTGGCCAGCCGAATGCGACTGGTCTTTAGCACGCTCGAGGTAGTGAGTCCTCAATGGC 3721
||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 949 TTGTGGCCAGCCGAATGAGACTGGTGTTTAGCACTCTCGAGGTAGTGAGTCCTCAATGGC 1008
Query 3722 CACGGGTTTAA 3732
|||||||||||
Sbjct 1009 CACGGGTTTAA 1019
> AT1G62280.1 | Symbols: SLAH1 | SLAC1 homologue 1 | chr1:23007147-23008585
REVERSE LENGTH=1365
Length=1365
Score = 1085 bits (587), Expect = 0.0
Identities = 942/1107 (85%), Gaps = 49/1107 (4%)
Strand=Plus/Plus
Query 1 ATGGAAATTCCTAGTCAAGAAATTCATATC-AAGATTGATAACCCAAGATCAAGCAGCAA 59
||||||||||| || ||||||||||||||| || || |||||| ||| | | || || |
Sbjct 46 ATGGAAATTCCGAGGCAAGAAATTCATATCGAA-ATCGATAACTCAATACCGAGTAG-TA 103
Query 60 CAAGAG---AAAGACTAACCTCGCTGATGCCGAACCCATTGTCCTGATGTCTGTTTTGAG 116
||||| ||| ||| ||| |||||||| ||||| ||||| ||||||| | |||| |
Sbjct 104 -AAGAGTTTAAA-ACTGGCCTAGCTGATGCTAAACCCGTTGTCTTGATGTCCGCTTTGCG 161
Query 117 TAGTCTCCATGCGGGATATTTCAGAATAAGTCTTTCTCTATGTAGCCAAGCAT-TGT-TG 174
||||||||| ||||| |||||||| ||||| || ||||| || |||||||| | | | ||
Sbjct 162 TAGTCTCCACGCGGGCTATTTCAGGATAAGCCTCTCTCTTTGCAGCCAAGC-TCT-TCTG 219
Query 175 TGGAAGAT-A--A-------TG-GT---C---CA----T--T-TGCATAGCGAACTCCCG 210
|||||||| | | || || | || | | |||| ||| |||||||
Sbjct 220 TGGAAGATAATGATCGCGCCTGAGTCACCGAGCATGTCTCATATGCACAGCAAACTCCCA 279
Query 211 TCTATGGCATAT-TATCTCTTGTGGTACCTAGCACTTGCAACACAAGTATCACTCTGTTT 269
|||||||| | | |||||||||||||| ||||||||| ||||||||| |||||||||||
Sbjct 280 TCTATGGCGT-TCCATCTCTTGTGGTACTTAGCACTTGTAACACAAGTGTCACTCTGTTT 338
Query 270 ATTGTATGCCTTCAAGTGTATTTTCCTCTTTGACATGGTGAAGGAAGAGTTCTTGCACTA 329
||||||||||| ||||| |||||| ||||||||| ||||||||||||||||||||||||
Sbjct 339 TTTGTATGCCTTGAAGTGCATTTTCTTCTTTGACAAGGTGAAGGAAGAGTTCTTGCACTA 398
Query 330 TATTGGAGTGAACTATCTTTACGCTCCATCCATTTCATGCCTTCT-ATTGCTTCAATCAG 388
||| |||||||||||||| ||||||||||| |||||||| ||||| | ||||||||||||
Sbjct 399 TATCGGAGTGAACTATCTCTACGCTCCATCTATTTCATGGCTTCTCA-TGCTTCAATCAG 457
Query 389 CTCCGATGATCAAACCACATAGCGTTTTGTATCAGACACTATTCTGGATCTTTGTTGTCC 448
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||| ||| |
Sbjct 458 CTCCAATGATGGAACCAAATAGCGTTTTGTATCAGACACTATTCTGGATCTTTGCTGTTC 517
Query 449 CAGTCTTGACCCTAGACACAAAGCTTTATGGACAATGGTTCACAACAGAGAAAAGGTTTT 508
|||||||||| ||||||| |||||||||||| || ||||||||||| ||||| || ||||
Sbjct 518 CAGTCTTGACACTAGACATAAAGCTTTATGGCCAGTGGTTCACAACGGAGAAGAGATTTT 577
Query 509 TGTCGATAATGGCAAACCCGGCAAGCCAAGTATCAGTAATCGCAAACCTAGTGGCTGCAA 568
||||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 578 TGTCGATGCTAGCAAACCCGGCAAGCCAAGTATCGGTAATCGCAAACCTCGTGGCTGCAC 637
Query 569 GGGGAGCAGCAGAGATGGGTTGGAAAGAGTGTGCTCTATGCTTGTTCTCACTTGGGATGG 628
| ||||||||||||||||||||||| ||||||||||||||| |||||||||| || ||||
Sbjct 638 GAGGAGCAGCAGAGATGGGTTGGAATGAGTGTGCTCTATGCATGTTCTCACTCGGAATGG 697
Query 629 TTCATTATTTGGTTATCTTTGTCACACTTTATCAACGCTTACCAGGCGGAAACAATTTCC 688
|||| |||||||||||||||||||| || |||||||||||||| || |||||||| ||||
Sbjct 698 TTCACTATTTGGTTATCTTTGTCACCCTCTATCAACGCTTACCGGGAGGAAACAACTTCC 757
Query 689 CAACCACGCTAAGACCGGTTTTCTTCTTGTTTTTCGCTGCACCAGCGACTG-CAAGTCTA 747
|| ||| | |||| || ||||||||||||| ||||||||||||| | || ||||||||
Sbjct 758 CAGCCAAGTTAAGGCCAATTTTCTTCTTGTTCGTCGCTGCACCAGCCA-TGGCAAGTCTA 816
Query 748 GCTTGGAACTCTATTTGTGGAACCTTTGATACTATAGCCAAGATGTTATTCTTCCTTTCA 807
|| |||||||||||||||||||| |||||| | |||| |||||||| ||||||||||||
Sbjct 817 GCCTGGAACTCTATTTGTGGAACTTTTGATGCCGTAGCGAAGATGTTGTTCTTCCTTTCA 876
Query 808 CTCTTCATCTTTATGTCCCTGGTTTGTAGGCCAAATCTTTTGAAGAAGTCGATAAAAAGA 867
|| |||||||| ||||||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct 877 CTTTTCATCTTCATGTCCCTGGTCTGTAGGCCAAATCTTTTCAAGAAATCAATGAAAAGA 936
Query 868 TTCAATGTCGCGTGGTGGGCTTACTCATTCCCTA-TCACATTTCTTGCTTTAGACTCGGT 926
|||||||||||||||||||||||||| ||||| | |||| |||||||| |||||||||||
Sbjct 937 TTCAATGTCGCGTGGTGGGCTTACTCGTTCCC-ACTCACTTTTCTTGCGTTAGACTCGGT 995
Query 927 TCAGTACGCGCAAGAGGTGAAAGA-CCATGTCGCTTC-GGTCTTGATGTTTATCTTCTCA 984
|||||| ||||||||||||||||| || |||| ||| || ||| ||| |||||||||||
Sbjct 996 TCAGTATGCGCAAGAGGTGAAAGATCCG-GTCGGTTCTGG-CTTAATGCTTATCTTCTCA 1053
Query 985 TCCATCTCAGTTTTGATATTCTTTGGTGTGATGTTACTGACAGCAGCAAACAGCAAAAGA 1044
|| |||||||||||||| ||| | ||| ||||| |||||||||||||||||||||| |||
Sbjct 1054 TCTATCTCAGTTTTGATCTTCCTCGGTATGATGGTACTGACAGCAGCAAACAGCAATAGA 1113
Query 1045 TTACTCAGACGTGATCATGTCCTCTGG 1071
||||||||| |||| ||| || |||
Sbjct 1114 CTACTCAGACACGATCCTGTTCT-TGG 1139
> AT1G05061.1 | Symbols: | Pseudogene of AT2G32630; pentatricopeptide
(PPR) repeat-containing protein | chr1:1453216-1454260
REVERSE LENGTH=1045
Length=1045
Score = 54.7 bits (29), Expect = 6e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1305 GAAACTGTTCGACGAAATGCCTGAGAGAG 1333
|||||||||||||||||||||||||||||
Sbjct 203 GAAACTGTTCGACGAAATGCCTGAGAGAG 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 185868523815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5