BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338169
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62030.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 1199 0.0
AT5G37210.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 204 2e-51
AT1G44030.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 104 2e-21
> AT1G62030.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr1:22924250-22926598 REVERSE LENGTH=2349
Length=2349
Score = 1199 bits (649), Expect = 0.0
Identities = 764/821 (93%), Gaps = 2/821 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTTGGAAGGGGAGGTCATATCAGCCATTTCTCAACTAATATCTATGGATGACCCT 60
|||| ||| || |||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 59 ATGGATTTTGAGGGGGAGGTCATATCAGCCATTTCTCAACTAATCTCTATCGACGACCCT 118
Query 61 TGGGAAGTGGATAATGGGGATGCGAATACGGAGATCATTGCACGCATTATTGAAATAAGC 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 119 TGGGAAGTGGATAATGGGGATGCGAATACGGAGATCATTGCACGCGTTATTGAGATAAGC 178
Query 121 TATGTTAGTAGCGCATTCTGCGAATACGCTATGTTACTAATGCAGCAGCAGCCGGAGTCG 180
|| ||||||| | ||||||||||||| ||||||||||||| ||||||| || ||||||||
Sbjct 179 TACGTTAGTAACACATTCTGCGAATATGCTATGTTACTAACGCAGCAGAAGGCGGAGTCG 238
Query 181 GAGCTCATGTTACTCATTACTCAAACCATCTCTATCTACGACTCTATGGATTTGGATTCC 240
|||||||||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 239 GAGCTCATGTTACTTATTACTCAAACCATATCTTTCTACAACTCTATGGATTTGGATTCC 298
Query 241 CAGCCGGAGCCGCTAAGAAAACTCATATCATTCATCGCTAAAAAAGCAGATCTCGACTAC 300
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 299 CAGCCGGAGCCGCTAAGGAAGCTCATATCATTTATCGCTAAAAAAGCAGATCTCGACTAC 358
Query 301 TATGTTGATCCCTTGTTGGACCAGGATTTGGAGGTCTTGCCACTCTTTGGTAAAACATTA 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 359 TATGTTGATCCCTTGTTGGAGCAGGATTTGGAGGTCTTGCCACTCTTTGGTAAAACATTA 418
Query 361 AGTCTTGCGCCAGAGCCAGAGCTCATATCACTCATCCGTCAAATAGTCTCCCTCGTCGTC 420
||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||
Sbjct 419 AGTCTTGAGCCAGAGCCAGAGCTTATATCACTCATCCGTAAAATAGTCTCCCTCGTCATC 478
Query 421 TCTATGGATCCAAAGTGGAAGAAGCTTATTTCCTTATGCCCTCAAGTAGCAGTAAGATTG 480
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 479 TCTATGGATCCAAAGTGGAAGAAACTTATTTCCTTATGTCCTCAAGTAGCCGTAAGATTG 538
Query 481 GAAAAAGGAAAATTACTTGTGGATGAAGAATTCTTGTGGGAAACCAATGACAAATGGTGT 540
||||| || | ||||| ||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 539 GAAAATGGTATATTACACGTGGATGAAGAATTCGTGTGGGAAACCAATGACAAGTGGTGT 598
Query 541 TGTTTCCCTTTATTCTGGCTGAAGTTTATGTCAACAGGAGAAGACT-CTACACATTTTTT 599
|||||||||||||||||||||||||| | |||| ||| | |||| | |||| ||||||||
Sbjct 599 TGTTTCCCTTTATTCTGGCTGAAGTTCAGGTCACCAGAACAAGA-TGCTACCCATTTTTT 657
Query 600 CTGCCGAGGTTGCAATGGCAAGAACCATAATGAAAACAACAAGGCTCAAGTTGAGATCAA 659
||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 658 CTGCCGAGGTTGCAACGGCAAGAACCATAACGAAAACAACAAGGCTCCAGTTGAGATCAA 717
Query 660 ACACCCTCTTCATCCAAGACATTCTCTTCGGCTTGCTTTGTTGCGGAAGTCTCATGAAAC 719
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 718 ACACCCTCTTCATCCAAGACATTCTCTTCGGCTTGCTTTGTTGCGAAAGTCTAATGAAAC 777
Query 720 GAGGCAATGCTATTGTTGTGATGAAAATCTCCAAGAGCTATTTTATTATTGCTCAGCTTG 779
|||||| |||||||||||||||| || ||| |||||| ||||||||||||||||||||||
Sbjct 778 GAGGCAGTGCTATTGTTGTGATGTAAGTCTTCAAGAGATATTTTATTATTGCTCAGCTTG 837
Query 780 CGACTATGCTATGAATATAGCTTGTGTGGAGAAACCACCGG 820
||||||||||||||| |||||||||||||||||||| ||||
Sbjct 838 CGACTATGCTATGAACATAGCTTGTGTGGAGAAACCTCCGG 878
Score = 429 bits (232), Expect = 3e-119
Identities = 262/277 (95%), Gaps = 0/277 (0%)
Strand=Plus/Plus
Query 819 GGACTTATACGTGAAGCCTGGTTCATCTTGGATAAGCTTCTCCTTCAATGGAGCGAAGAT 878
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2014 GGATTTATACGTGAAGCCTGGTTCATCTTGGATAAGCTTCTCCTTCAATGGAGAGAAGAT 2073
Query 879 AAATGTTCAGCCCAACAATCATCATATGACTCGACCTTTTTGCTCTCATTGCAAGAAGCG 938
| |||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2074 ATATGTTCGGGCCAACGATCATCATATGACTCGACCTATTTGCTCTCATTGCAAGAAGCG 2133
Query 939 TTGTCCACACAAAATTGTTCTGGAGTCATCTGGTTCAAAATTTTGTTCCACATCTTGTGT 998
||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 2134 TTGTCCACACAAAATAGTTTTGGAGTCGTCTGGTTCAAAATTTTGTTCCACATCTTGTGT 2193
Query 999 TGGTGAATTTTTGTCTACAAAGGTGAACACAGCTGGTCATCGTGAATATCTACAACGGAG 1058
|||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2194 TGGTTATTTTTTGTCTACAAAGGTGAACACAGCTGGTCATCGCGAATATCTACAACGGAG 2253
Query 1059 AGGCTACGGAAATTATGAGTTCTCAGCATTGACATAG 1095
|||||||||||||||||||||||||||| |||| |||
Sbjct 2254 AGGCTACGGAAATTATGAGTTCTCAGCACTGACGTAG 2290
> AT5G37210.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr5:14729225-14731508 REVERSE LENGTH=2034
Length=2034
Score = 204 bits (110), Expect = 2e-51
Identities = 364/481 (76%), Gaps = 40/481 (8%)
Strand=Plus/Plus
Query 369 GCCAGAGCCAGAGCTCATATCACTCATCCGTCAAATAGTCTCCCTCGTC-GTCTCTATGG 427
||| ||||| |||||| ||||||||||| |||| || || |||||||| | |||||||
Sbjct 345 GCCGGAGCCGGAGCTCCTATCACTCATCTATCAAGTATTCACCCTCGTCAG-CTCTATGA 403
Query 428 ATCCAAAGTGGAAGAAGCTTATTTCCT-TATGCCCTCAAGTAGCAGTA-AGATTGGAAAA 485
|| |||||||| |||||||||||| || || |||||||||||| | | ||||||| ||
Sbjct 404 ATTCAAAGTGGGAGAAGCTTATTT-CTGTACGCCCTCAAGTAGTA-CACAGATTGGGAAG 461
Query 486 AG-GAAAA-TTACT-TG--TGGATGAAGAATTCTTGTGGGA-AACCAATGACAAAT-GGT 538
|| |||| ||| | || | |||||| || ||| || | | || || |||| | ||
Sbjct 462 AGACAAAATTTA-TATGAAT-GATGAACAAGTCTCGT-GTAGAAGGTATAACAAGTGGGC 518
Query 539 GTTGTTTCCCTTTATTCTGGCTGAAGTTTAT-GTCAACAGGAGAAGAC-TC--TACACA- 593
| ||| ||||| | |||| | | | || | || | ||||||||| | || ||
Sbjct 519 G-TGTCTCCCTAAAAACTGGTTTATG-TTGTGGTTTATGGGAGAAGACGACGAAACGCAC 576
Query 594 TTTTTTCTGCCGAGGTTGC-AATGGCAAGAACCATAATGAAAACAACAAGGCTCAAGTTG 652
||| || ||| ||| |||| || ||| |||||||||| ||| | ||||| |||| |||||
Sbjct 577 TTTCTT-TGCAGAGCTTGCGAA-GGCCAGAACCATAAAGAACATAACAACGCTCCAGTTG 634
Query 653 AGATCAAACACCCTCTTCAT-CCAAGACATTCTCTTCGGCTTG-CTTTGTTGCGGAA-GT 709
|||||||||||| ||||||| ||||| || || |||| ||||| | | || | || |
Sbjct 635 AGATCAAACACCATCTTCATCCCAAG-CACTCACTTCTGCTTGTCAATATT--GAAATAT 691
Query 710 CTCAT-GAAACGAGGCAATGCTATTGTTGTGATGAAAATCTCCAAGAGC--TATTTTATT 766
|| | || | |||| ||||||||||||| || ||| |||| | || | | ||||||
Sbjct 692 ATCCTAGAGA-GAGGAAATGCTATTGTTGCGACGAAGATCT-C-GGAACTTTCTTTTATC 748
Query 767 ATTGCTCAGCTTGCGACTAT-GCTATGAATATAGCTTGTGTGGAGAAACCACCGGACTTA 825
||||||| |||||||| | | || |||||||||||||||||||||||||||||| ||||
Sbjct 749 ATTGCTCGGCTTGCGA-TTTCACTCTGAATATAGCTTGTGTGGAGAAACCACCGGTCTTA 807
Query 826 T 826
|
Sbjct 808 T 808
> AT1G44030.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr1:16724237-16726643 REVERSE LENGTH=2407
Length=2407
Score = 104 bits (56), Expect = 2e-21
Identities = 94/113 (83%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 162 GCAGCAGCAGCCGGAGTCGGAGCTCATGTTACTCATTACTCAAACCATCTCTATCTACGA 221
||||| | ||||| ||||| ||||||||| ||||||||| |||| ||||| ||| | |
Sbjct 122 GCAGCCGAAGCCGCAGTCGAAGCTCATGTCACTCATTACAGAAACAATCTCCCTCTTCAA 181
Query 222 CTCTATGGATTTGGATTCCCAGCCGGAGCCGCTAAGAAAACTCATATCATTCA 274
||| ||| |||||||||||||||||||||||||||| || || ||||| |||
Sbjct 182 CTCCATGAATTTGGATTCCCAGCCGGAGCCGCTAAGGAAGCTTGTATCACTCA 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5