BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338172
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62010.1 | Symbols: | Mitochondrial transcription terminati... 1175 0.0
AT1G62120.1 | Symbols: | Mitochondrial transcription terminati... 680 0.0
AT1G61980.1 | Symbols: | Mitochondrial transcription terminati... 514 7e-145
AT1G62085.1 | Symbols: | Mitochondrial transcription terminati... 459 3e-128
AT1G61990.1 | Symbols: | Mitochondrial transcription terminati... 451 5e-126
AT1G62110.1 | Symbols: | Mitochondrial transcription terminati... 418 6e-116
AT1G62150.1 | Symbols: | Mitochondrial transcription terminati... 388 4e-107
AT1G61960.1 | Symbols: | Mitochondrial transcription terminati... 372 4e-102
AT1G62055.1 | Symbols: | pseudogene, hypothetical protein | ch... 191 1e-47
> AT1G62010.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22915745-22917330 FORWARD
LENGTH=1586
Length=1586
Score = 1175 bits (636), Expect = 0.0
Identities = 900/1024 (88%), Gaps = 32/1024 (3%)
Strand=Plus/Plus
Query 1 ATGAATTCTCTTATACTC-G-G-TACAAGAAGGTTCGTGGGGTTGCAGAAATG-GCGTAA 56
|||||||||||||||||| | | | | ||||||||||||||||||| | || | ||
Sbjct 142 ATGAATTCTCTTATACTCGGTGCTGCTAGAAGGTTCGTGGGGTTGC--ATTTGAGAGTTT 199
Query 57 CTTGAGAA-TTTCATTGCAAAATGGATC-TGCTTTTTCCAATTCCTTCTCCTCTGCTACT 114
| | ||| || |||||||||| ||| | | | ||| |||| ||||| ||||||| |
Sbjct 200 C-AGTGAACCTT--TTGCAAAATGAATCTTTC-TCTTCGTATTCGTTCTCTTCTGCTAGT 255
Query 115 GCTGCTGATGTAAACCCTAAAGATGGTGGAAAAGGGGAGACCTTTAAAGCTTCGTCATTC 174
||||||||||| | ||| | |||||||||||||||||| | ||||| |||
Sbjct 256 GCTGCTGATGTGAGCCC---------T---AAAGGGGAGACCTTTAAATCCTCGTCCTTC 303
Query 175 CGTGATTCACTGCGTTTAGCTGCAAAACTCACAAGTA-AA-GTCAATGCTGATTCGGTTC 232
| ||||||||||||||||||| |||||||||| | | || | ||| ||||||| ||||
Sbjct 304 CTTGATTCACTGCGTTTAGCTACAAAACTCAC-TG-ACAAGGGAAATTCTGATTCCGTTC 361
Query 233 TGGATCTTCTTAGAAGTTATGGGTTCACAGATTCTCAGATCTCCAGCATCATTAGGAGTG 292
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 362 TGGATCTTCTCAGAAGTTATGGGTTCACTGATTCTCAGATCTCCAGCATCATCAGGAGTG 421
Query 293 ATCCACA-AGTGCTTATTGCCAATTCTGCGACATCCCTGGGTTCAAAGCTTGAGTTTTTG 351
|| || | ||||||||| | |||| |||||||||||| |||||||||||| ||||||||
Sbjct 422 ATTCA-AGAGTGCTTATAGACAATGATGCGACATCCCTTGGTTCAAAGCTTCAGTTTTTG 480
Query 352 CAGTCCAGAGGAGCTTCAAGCTCTGAGCTCACTGAGATTGTTTCTACAGTTCCTAAAATC 411
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 481 CAGTCCAGAGGAGCTTCAAGCTCTGAGCTCACTGAGGTTGTTTCCACAGTTCCTAAAATC 540
Query 412 TTGGGGAAGAGAGCGGGCAAATCTATCAGCAGATACTATGATTTCATCAAAGTCATTATA 471
||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 541 TTGGGGAAGAGAGAGGGCAAATCTCTCAGCAGATATTATGATTTCATCAAAGTCATTATA 600
Query 472 GAGGCGGATAAGAGTTCCAAGTATGTAAAGTTATCTCATTCTTTGCCACAAGGTAACAAG 531
|| || ||||||||||||||||||| |||| |||||||||||||| |||| |||||||||
Sbjct 601 GAAGCTGATAAGAGTTCCAAGTATGAAAAGATATCTCATTCTTTGGCACAGGGTAACAAG 660
Query 532 ATCAGAAATGTTTTGGTTTTGAGAGATTTGGGTGTGCCTCGAAAGCGGTTATTACCTTTG 591
||||||||| | |||||||||||||| | || ||||||| |||||||||| | | ||||
Sbjct 661 ATCAGAAATATCTTGGTTTTGAGAGAACTAGGCGTGCCTCAAAAGCGGTTACTGCTTTTG 720
Query 592 CTCATCTCCAACTTTCAGCCCGTGTGTGGAAAAGAAAATTTTGATGCATCACTCAAGAAG 651
||||||||||| | ||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 721 CTCATCTCCAAATCGCAGCCTGTTTGTGGAAAAGAAAAGTTTGATGCATCACTCAAGAAG 780
Query 652 GTCGTTGAGATGGGTTTTGATCCAACCACCTCAACGTTTGTGCACGCTTTGCACATGCTT 711
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 781 GTAGTTGAGATGGGTTTTGATCCAACCACCTCAACGTTTGTGCACGCTTTGCATATGCTT 840
Query 712 TACCAAATGAGCGACAAAACGATTGAAGAAAAAGTT-GAAGTCTATAGAAGTATAGGTTT 770
||||||||||||||||||||||||||||||||| | || |||||||||||| |||||||
Sbjct 841 TACCAAATGAGCGACAAAACGATTGAAGAAAAAATCCGA-GTCTATAGAAGTGTAGGTTT 899
Query 771 CACCGTGGACGATGTATGGGCAATGTTCAAGAAGTGGCCACGCTCTCTGAGACACTCGGA 830
| | || || |||||||||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 900 CTCTGTTGATGATGTATGGGCAATGTTCAAGAAGTGGCCACGCTCTTTGACACATTCGGA 959
Query 831 GAAGAAGGTAGCCAACTCCGTAGAAACATTTCTAGGTCTAGGATTCAGCAGAGATGAGTT 890
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 960 GAAGAAGGTAGCCAACTCTATAGAAACATTTCTAGGTCTAGGATTCAGCAGAGATGTGTT 1019
Query 891 TTTGATGATGTTCAAGCGGTTTCCTCAGTGCATTGGATATTCGACAGAGTTAGTGAAGAA 950
| |||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||
Sbjct 1020 TATGATGATGTTCAAGCGGTTTCCTCCGTGTATTGGATATTCTACAGAGGCGGTGAAGAA 1079
Query 951 GAAGACTGAGTTTCTGGTGAAGGAGATGAATTGGCCAGTAAAGGCTGTGGCTTCAGTCCC 1010
||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1080 GAAGACTGAGTTTTTGGTCAAGGAGATGAATTGGCCAGTAAAGGCTGTGGCTTCAATCCC 1139
Query 1011 TCAG 1014
||||
Sbjct 1140 TCAG 1143
> AT1G62120.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22960191-22961779 REVERSE
LENGTH=1589
Length=1589
Score = 680 bits (368), Expect = 0.0
Identities = 683/827 (83%), Gaps = 54/827 (7%)
Strand=Plus/Plus
Query 221 CTGATTCGGTTCTGGA-TCTTCTT-AGAAGTTATGGGTTCACAGATTCTCAGATCTCCAG 278
||||||| ||||| || |||| || |||||| |||||||||| ||||||||||||||||
Sbjct 403 CTGATTCTGTTCT-GAGTCTT-TTGAGAAGTCATGGGTTCACTGATTCTCAGATCTCCAA 460
Query 279 CATCATTAGGAGTGATCCACAAG--TGCTTATTGCC-A-ATTCTGCGACATCCCTGGGTT 334
||||||||||| | ||| |||| |||||| | || | || ||| || |||||| | |
Sbjct 461 CATCATTAGGACT-TTCC-CAAGATTGCTTA-T-CCTAGATGCTGAGAAATCCCTTGCTC 516
Query 335 CAAAGCTTGAGTTTTTGCAGTCCAGAGGAGCTTCAAGCTCTGAGCTCACTGAGATTGTTT 394
| |||||| ||||| ||||||||| ||| |||||||||||||||||||| |||| |||||
Sbjct 517 CCAAGCTTCAGTTTCTGCAGTCCATAGGTGCTTCAAGCTCTGAGCTCACCGAGACTGTTT 576
Query 395 CTACAGTTCCTAAAATCTTGGGGAAGAGAGCGGGCAAATCTATCAGCAGATACTATGATT 454
|| ||||||| ||||| |||||||||||| |||||||||| ||||||||||||||||||
Sbjct 577 CTGCAGTTCCGAAAATATTGGGGAAGAGAAAGGGCAAATCTCTCAGCAGATACTATGATT 636
Query 455 TCATCAAAGTCATTATAGAGGCGGATAAGAGTTCCAAG-TATGTAAAGTTATCTCATTCT 513
|| |||||||||||||||| |||||||||||||||||| || | |||||||| |||||||
Sbjct 637 TCGTCAAAGTCATTATAGAAGCGGATAAGAGTTCCAAGTTA-GAAAAGTTATGTCATTCT 695
Query 514 TTGCCACA-AG--GTAA-CA--AG------ATCAGAAATGTT-TTGGTTTTGAGAGATTT 560
|||||| | | |||| || || ||||||||| || ||||| |||||||| |
Sbjct 696 TTGCCAGAGGGTAGTAAGCAGGAGAACAAAATCAGAAAT-TTATTGGTGTTGAGAGAAAT 754
Query 561 GGGTGTGCCTCGA-AAGCGGTTATTAC-CTTTGCTCATCTCCAACTTTC--AGCCCGTGT 616
||||||||||| | | | |||||| | | ||||| || ||| | | | || || |
Sbjct 755 GGGTGTGCCTC-AGAGGTTGTTATT-CTCATTGCTTATATCCGA-TGCCGGAG-ATGTTT 810
Query 617 GTGGAAAAGAAAATTTTGATGCATCACTCAAGAAGGTC-GTTGAGATGGGTTTTGATCCA 675
|||| |||||||| ||| | | |||||||||||||| | |||||||| ||||||||||||
Sbjct 811 GTGGTAAAGAAAAATTTAAAGAATCACTCAAGAAGG-CTGTTGAGATTGGTTTTGATCCA 869
Query 676 ACCACCTCAACGTTTGTGC-ACGCT-TTGCACATGCTTTACCAAATGAGCGACAAAACG- 732
|||||| |||| ||||| | | ||| || || | |||||| | | |||||| ||| |
Sbjct 870 ACCACCGCAACTTTTGT-CAAAGCTCTT-AACGTTCTTTACGGATTAAGCGAC-AAAGGA 926
Query 733 ATTGAAGAA-AAAGTTGAA-GTCTATAGAA-GTATAGGTTTCACCGTGGACGATGTATGG 789
|||||| || ||| || || | || || || || |||| || | |||||||||||||||
Sbjct 927 ATTGAA-AATAAA-TTCAATGCCTGTAAAAGGT-TAGGCTTGGCTGTGGACGATGTATGG 983
Query 790 GCAATGTTCAAGAAGTGGCCACGC-TCTCTGAGACACTCGGAGAAGAAGGTAGCCAACTC 848
||||||||||||||||||||| | | ||||| | | || ||||||||| ||| |||||
Sbjct 984 GCAATGTTCAAGAAGTGGCCAAACAT-TCTGACAAAGTCTGAGAAGAAGATAGAGAACTC 1042
Query 849 CGTAGAAACATTTCTAGGTCTAGGATTCAGCAGAGATGAGTTTTTGATGATGTTCAAGCG 908
||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1043 CGTTGAAACATTTCTAGGCCTAGGATTCAGCAGAGATGAGTTTTTGATGATGGTCAAGCG 1102
Query 909 GTTTCCTCAGTGCATTGGATATTCGACAGAGTT-AGTGAAGAAGAAGACTGAGTTTCTGG 967
|| |||||||||||||||||||| |||||||| | |||||| |||||||||||||||||
Sbjct 1103 ATTCCCTCAGTGCATTGGATATTCTACAGAGTTGA-TGAAGACGAAGACTGAGTTTCTGG 1161
Query 968 TGAAGGAGATGAATTGGCCAGTAAAGGCTGTGGCTTCAGTCCCTCAG 1014
||| |||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1162 TGACGGAGATGAATTGGCCACTAAAGGCTGTGGCTTCAATCCCTCAG 1208
> AT1G61980.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22908045-22909588 FORWARD
LENGTH=1544
Length=1544
Score = 514 bits (278), Expect = 7e-145
Identities = 641/808 (79%), Gaps = 58/808 (7%)
Strand=Plus/Plus
Query 221 CTGATTCGGTTCTGGATCTTCTT-AGAAGTTATGGGTTCACAGATTCTCAGATCTCCAGC 279
|||| || |||||| ||||| || |||||| |||||||||| |||||||||||||||| |
Sbjct 368 CTGACTCTGTTCTGAATCTT-TTGAGAAGTCATGGGTTCACTGATTCTCAGATCTCCACC 426
Query 280 ATCATTA-GGAGTGATCCACAAGTGCTTATTGCCAATTCTGCGACATCCCTGGGTTCAAA 338
||| ||| ||| | |||||||| ||||| | || || ||| || ||| || | | | ||
Sbjct 427 ATCGTTACGGA-TTATCCACAATTGCTTGTAGCTGATGCTGAGAAATCACTTGCTCCCAA 485
Query 339 GCTTGAGTTTTTGCAGTCCAGAGGAGCTTCAAGCTCTGAGCTCACTGAGATTGTTTCTAC 398
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GCTTCAGTTTTTGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCACTGAGATTGTTTCTAC 545
Query 399 AGTTCCTAAAATCTTGGGGAAGAGAG-CGGGCAAATCTATCAGCAG-ATACTATGATTTC 456
|||||||||||||||||| ||||||| | |||| |||||||| | || ||||||||||
Sbjct 546 AGTTCCTAAAATCTTGGGAAAGAGAGGCCA-CAAAACTATCAGC-GTATTCTATGATTTC 603
Query 457 ATCAAAGTCA-TTATAGAGGCGGATAAGAGTTCCAAGTATGTAAAGTTATCTCATTCTTT 515
||||||| | || || | ||||||||||||||| | ||||| || ||| ||||
Sbjct 604 ATCAAAGAAACTT-TACTTG---ATAAGAGTTCCAAGTCCGAAAAGTCATGTCAACCTTT 659
Query 516 GCCACAAGGTAA-C---A-A----GATCAGAAATGTT-T-TGGTTTTGAGAGATTTGGGT 564
||||| ||||| | | | |||||||||| || | || |||||||||| |||||
Sbjct 660 TCCACAGGGTAATCTGGAGAACAAGATCAGAAAT-TTATCTG-TTTTGAGAGAATTGGG- 716
Query 565 G-TGCCTCGA-AAGCGGTTATTACCTTTGCTCATCTCCAACTTTCAGC-CCGTGTGT--G 619
| |||||| | ||| |||||| || ||||||||||| | | | || ||| | |
Sbjct 717 GATGCCTC-ACAAGTTGTTATTCCCCTTGCTCATCTCTTG-TGAC-GTACC-TGTCTTCG 772
Query 620 GAAAAGAAAATTTTGATGCATCACTCAAGAAGGTCGTTGAGATGGGTTTTGATCCAACCA 679
| |||||||| ||||| | ||| |||||||| || ||||||||||||||||||||| |||
Sbjct 773 GTAAAGAAAAATTTGAAGAATCCCTCAAGAAAGTTGTTGAGATGGGTTTTGATCCATCCA 832
Query 680 CCTCAACGTTTGTGCACGCTTTGCACAT-GCTTTACCAA-AT-GAGCGACAAAA-CGATT 735
|||||| ||||||| | |||||| | | | || | || || ||||||||||| | ||
Sbjct 833 CCTCAAAGTTTGTGGAAGCTTTGTGCGTTG-TTCA--AAGATTGAGCGACAAAAAC-ATA 888
Query 736 GAAGAAAAAGTTGAA-GTC-TATAGAAG-TATAGG-TTTCACCGTGGACGATGTATGGGC 791
||||| ||||| || | | |||| ||| | |||| ||| | ||||| |||||||| |
Sbjct 889 GAAGATAAAGTC-AATG-CGTATAAAAGGT-TAGGCTTTGAT-GTGGAATATGTATGGAC 944
Query 792 AATGTTCAAGAAGTGGCCACGCTCTCTGAGACACTCGGAGAAGAAGGTAGCCAACTCCGT 851
| ||||||||| ||||||| || ||||| |||||||||||||||| || ||| || |
Sbjct 945 AGTGTTCAAGAGGTGGCCAAACTTTCTGACACACTCGGAGAAGAAGATATTGAACACCAT 1004
Query 852 AGAAACATTTCTAGGTCTAGGATTCAGCAGAGATGAGTTTTT-GATGATG-TTCAAGCGG 909
|||||||||||||| ||||| |||||||||||||||||| | || | || |||||
Sbjct 1005 TGAAACATTTCTAGGCCTAGGGTTCAGCAGAGATGAGTTTAGCG-TGTTAATT-AAGCGC 1062
Query 910 TTTCCTCAGTGCATTGGAT-ATTCGACAGAGTTAGTGAAGAAGAAGACTGAGTTTCTGGT 968
||||||||| ||||||||| || || | ||| | || || ||||||||||||||| ||||
Sbjct 1063 TTTCCTCAGGGCATTGGATTATCCG-CGGAGATGGTTAAAAAGAAGACTGAGTTTTTGGT 1121
Query 969 GAAGGAGATGAATTGGCCAGTAAAGGCT 996
||| |||||||||||||| ||||||||
Sbjct 1122 AAAGAAGATGAATTGGCCACTAAAGGCT 1149
> AT1G62085.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22948757-22950142 REVERSE
LENGTH=1386
Length=1386
Score = 459 bits (248), Expect = 3e-128
Identities = 505/623 (81%), Gaps = 42/623 (7%)
Strand=Plus/Plus
Query 211 AAAGTCAATGCTGATTCGGTTCTGGA-TCTTCTT-AGAAGTTATGGGTTCACAGATTCTC 268
|||| |||| ||||||| ||||| || || | || |||||| |||||||||| |||||||
Sbjct 250 AAAGGCAATCCTGATTCTGTTCT-GAGTC-TATTGAGAAGTCATGGGTTCACTGATTCTC 307
Query 269 AGATCTCCAGCATCATTA-GGAGTGATCCACAAGTGCTTA-TTGCCAATTCTGCGACATC 326
||||||| |||||||||| ||| | |||||||| ||| || | || || ||| || |||
Sbjct 308 AGATCTCAAGCATCATTACGGA-TTATCCACAATTGC-TAGTAGCTGATGCTGAGAAATC 365
Query 327 CCTGGGTTCAAAGCTTGAGTTTTTGCAGTCCAGAGGAGCTTCAAGCTCTGAGCTCACTGA 386
| ||| | |||||| ||||| |||||||||||||||||||||| |||||||||||| |
Sbjct 366 AATTGGTCCCAAGCTTCAGTTTCTGCAGTCCAGAGGAGCTTCAAGGTCTGAGCTCACTCA 425
Query 387 GATTGTTTCTACAGTTCCTAAAATCTTGGGGAAGAGAGCGGG-CAAATCTATCAGCAGAT 445
||||| |||||||||||| |||||||||||||||||| ||| |||| ||||||||| ||
Sbjct 426 TATTGTATCTACAGTTCCTGAAATCTTGGGGAAGAGAG-GGGACAAAACTATCAGCATAT 484
Query 446 ACTATGATTTCATCAAAGTCATTATAGAGGCGGATAAGAGTTCCAAGTAT-GTAAAGTTA 504
|||||||||| | |||| |||||||| ||||||||||||||||||| | | |||||||
Sbjct 485 ACTATGATTTTGTTAAAGAGATTATAGAAGCGGATAAGAGTTCCAAGT-TCGAAAAGTTA 543
Query 505 TCTCATTCTTTGCCACA-AG--GTAA-CA--AG------ATCAGAAATGTTTTGGTTTTG 552
| ||||||||||||| | | |||| || || |||||||||||||||||||||
Sbjct 544 TGTCATTCTTTGCCAGAGGGTAGTAAGCAGGAGAACAAAATCAGAAATGTTTTGGTTTTG 603
Query 553 AGAGATTTGGGTGTGCCTCGAAA-GCGGTTATTACCTTTGCTCATCTC-CAACTTTCAGC 610
||||| |||||||| |||| ||| | ||| || || ||||| || || | | || |
Sbjct 604 AGAGAATTGGGTGTTCCTC-AAAGGTTGTTGTTCCCATTGCTTATATCTGATC-ACCAAC 661
Query 611 CCGTGTGTGGAAAAGAAAATTTTGATGCATCACTCAAGAAGGTCGTTGAGATGGGTTTTG 670
| || |||||||||||||||||||| | |||||||||||| || ||||||||||||||||
Sbjct 662 CTGTCTGTGGAAAAGAAAATTTTGAAGAATCACTCAAGAAAGTTGTTGAGATGGGTTTTG 721
Query 671 ATCCAACCACCTCAACGTTTGTGCAC-GCT-TT-GCACATGCTTTACCAAATGA-GCGAC 726
||||||||||||||| |||||| || ||| || | || ||||| | || |||||
Sbjct 722 ATCCAACCACCTCAAAGTTTGT-CAAAGCTCTTAGGGT-TG-TTTAC-AGATTCCGCGAC 777
Query 727 AAAACGATTGAAGAAAAAGTTGAA-GTCTATAGAAGTATAGG-TTTCACCGT-GGACGAT 783
||||| || |||| ||||||| || |||| || |||| |||| ||| | || ||| |||
Sbjct 778 AAAACTATAGAAGCAAAAGTT-AATGTCTGTAAAAGTTTAGGCTTTT-CTGTTGGA-GAT 834
Query 784 GTATGGGCAATGTTCAAGAAGTG 806
|||||||||||||| ||||||||
Sbjct 835 GTATGGGCAATGTTTAAGAAGTG 857
> AT1G61990.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22911205-22912935 FORWARD
LENGTH=1731
Length=1731
Score = 451 bits (244), Expect = 5e-126
Identities = 619/793 (78%), Gaps = 53/793 (7%)
Strand=Plus/Plus
Query 214 GTCAATGCTGATTCGGTTCTGGA-TCT-TCTTAGAAGTTATGGGTTCACAGATTCTCAGA 271
|||||| ||||||| ||||| | ||| | |||||||||| |||||||||||||||||||
Sbjct 492 GTCAATCCTGATTCTGTTCT-AAGTCTGT-TTAGAAGTTACGGGTTCACAGATTCTCAGA 549
Query 272 TCTCCAGCATCATTA-GGAGTGATCCACAAGTGCTTATTGCCA-ATTCTGCGACATCCCT 329
|||| | |||||||| ||| | |||| | ||||| | | || || || || | | ||
Sbjct 550 TCTCTACCATCATTACGGA-TTATCCGTTATTGCTTGTAG-CAGATGCTAAGAAAGCACT 607
Query 330 GGGTTC-AAAGCTTGAGTTTTTGCAGTCCAGAGGAGCTTCAAGCTCTGAGCTCACTGAGA 388
|| || |||||| || || ||||||| ||||||||||||||||||||| |||||||||
Sbjct 608 TGG-TCGCAAGCTTCAGATTCTGCAGTCTAGAGGAGCTTCAAGCTCTGAGATCACTGAGA 666
Query 389 TTGTTTCTACAGTTCCTAAAATCTTGGGGAAGAGAGCGGGCAAATCTATCAGCAG-ATAC 447
||||||||||||| || | |||||| || | | | | |||||||| | | | ||||
Sbjct 667 TTGTTTCTACAGTACCGAGAATCTT-AGG-A-A-A----G-AAATCTATTA-CTGTATAC 716
Query 448 TATGATTTC-ATCAAAGTCATTATAG-AGGCGGATAAGAGTTCCAAG-TATGTAAAGTTA 504
||||| | | |||||| |||||||| | || |||| ||||| | || |||| || |
Sbjct 717 TATGA-TGCTGTCAAAGACATTATAGTA-GCCGATACGAGTT-CGAGTTATG--AA-CTC 770
Query 505 TCTCATTCTTTGCCACAAGGTAACAAGATCAGAAATGTTTTGGTTTTGAGAGATTTGGGT 564
| || || | || || || || ||| ||||||| | || ||||||||| || ||
Sbjct 771 CCACA-GGGTT--CTCAGGGGAATAAAATCCGAAATGTATCGGCTTTGAGAGAATTAGGC 827
Query 565 GTGCC-TCGAAAGCGGTTATTACCTTTGCTCATCTCCAACTTTCAGCCCGTGTGTGGAAA 623
|||| || | ||||||||| |||||| ||||||| | ||||| |||||||||||
Sbjct 828 ATGCCTTC-TCGGTTGTTATTACCCTTGCTCGTCTCCAAATCGCAGCCTGTGTGTGGAAA 886
Query 624 AGAAAATTTTGATGCATCACTCAAGAAGGTCGTTGAGATGGGTTTTGATCCAACCACCTC 683
|||||||||||||||||| || |||||||| ||||||||||| |||||||| |||||| |
Sbjct 887 AGAAAATTTTGATGCATCCCTTAAGAAGGTTGTTGAGATGGGGTTTGATCCCACCACCAC 946
Query 684 -AACGTTTGTGC-ACGCTTTGCACATGCTTTACCAAATGAGCGACAAAACGATTGAAGAA 741
|| ||||| | ||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 947 TAAA-TTTGTTTTA-GCTTTGCGGATGCTTTACCAAATGAGCGAGAAAACGATTGAAGAA 1004
Query 742 AAAGTTGAAGTCTATAGAAGTATAGGTTTCACCGTGGACGATGTATGGGCAATGTTCAAG 801
||||||| ||||| ||||||| ||||||| || ||||| |||||||||| ||| ||||||
Sbjct 1005 AAAGTTGTAGTCTTTAGAAGTTTAGGTTTTACTGTGGATGATGTATGGGAAATTTTCAAG 1064
Query 802 AAGTGGCCACGCTCTCT-GAGACACTCGGAGAAGAAGGTAGCCAACTCCG-TAGAAACAT 859
||| || || | | || | ||| |||||||| || || || | | ||||| |
Sbjct 1065 AAGACTCCTT-CTGTTTTGAAAGTCTCCAAGAAGAAGATATTGAAGTCGGCT-GAAACGT 1122
Query 860 TTCTAGGTCTAGGAT-TCAGCAGAGATGAGTTTTTGATGATG-TTCAAGCGGTT-TCCTC 916
|||||| ||||||| | ||||||| ||||||| |||||||| || ||||| || |||||
Sbjct 1123 TTCTAGACCTAGGATAT-AGCAGAGCTGAGTTTCTGATGATGGTT-AAGCG-TTATCCTC 1179
Query 917 AGTGCATTGGATATTC-GACAGAGT-TAGTGAAGAAGAAGACTGAGTTTCTGGTGAAGGA 974
||||||| |||||| | ||||| | || || ||||||| |||||||||||||||| |
Sbjct 1180 CTTGCATTGAATATTCTGT-AGAGTCT-GTTAAAAAGAAGAATGAGTTTCTGGTGAAGAA 1237
Query 975 GATGAATTGGCCA 987
|||||| ||||||
Sbjct 1238 GATGAAATGGCCA 1250
> AT1G62110.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22957876-22959711 REVERSE
LENGTH=1836
Length=1836
Score = 418 bits (226), Expect = 6e-116
Identities = 520/654 (80%), Gaps = 52/654 (8%)
Strand=Plus/Plus
Query 216 CAATGCTGATTCGGTTCTGGA-TCTTCTTAGAAGTTATGGGTTCACAGATTCTCAGATCT 274
|||| |||||| ||||| || |||| |||||||||||||||||||| ||||||||||||
Sbjct 475 CAATCCTGATTTAGTTCT-GAGTCTTTTTAGAAGTTATGGGTTCACAAATTCTCAGATCT 533
Query 275 CCAGCATCATTA-GGAGTGATCCACA-AGTGCTTATTGCCA-ATTCTGCGACATCCCTGG 331
|||||||||||| ||| | |||| | | ||||| | | || ||| || ||| || |
Sbjct 534 CCAGCATCATTACGGA-TTATCC-TAGATTGCTT-CTAATAGATGCTGAGAAATCACTTG 590
Query 332 GT-TCAAAGCTTGAGTTTTTGCAGTCCAGAGGAGCTTCAAGCTCTGAGCTCACTGAGATT 390
| || |||||| |||||||| |||| ||||||||||||||| ||||||||||| |||||
Sbjct 591 ATATC-AAGCTTCAGTTTTTGGAGTCTAGAGGAGCTTCAAGCCCTGAGCTCACTCAGATT 649
Query 391 GTTTCTACAGTTCCTAAAATCTTGGGGAA-GAGAGCGGGCAAA-TCTATCA-GCAGATAC 447
|||||||||||||||||||| || ||||| || || ||| ||| ||| | | ||||||||
Sbjct 650 GTTTCTACAGTTCCTAAAATATT-GGGAATGAAAGAGGG-AAAGTCTCT-AGGCAGATAC 706
Query 448 TATGATTTCATCAAAGTCATTATAGAGGCGGATAAGAGTTCCAAGTATGTAAA-GTTATC 506
||||||||| |||||| |||||||| || ||||||||||||||||| | ||| || |
Sbjct 707 TATGATTTCGTCAAAGAGATTATAGAAGCAGATAAGAGTTCCAAGTACG-AAACTTTGTG 765
Query 507 TCATTCTTTGCC--A--C----A---A-GGTAACAAGATCAGAAATGTTTTGGTT-TTGA 553
||| ||||||| | | | | ||||| || ||||||||||||| |||| || |
Sbjct 766 TCAACCTTTGCCAGAGGCTAATAGGCAGGGTAATAAAATCAGAAATGTTTCGGTTCTT-A 824
Query 554 GAGATTTGGGTGTGCCTCGA-AAGCGGTTATTAC-CTTTGCTCATCTCCAACT-TTCAGC 610
|||| ||||||||||||| | ||| |||||| | | ||||||||||| | | || |
Sbjct 825 GAGACTTGGGTGTGCCTC-AGAAGTTGTTATT-CTCCTTGCTCATCTCTGA-TGCCCAAC 881
Query 611 CCGTGTGTGGAAAAGAAAATTTTGATGCATCACTCAAGAAGGTCGTTGAGATGGGTTTTG 670
| || |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||
Sbjct 882 CTGTTTGTGGAAAAGAAAATTTTGAAGAATCACTCAAGAAGGTTGTTGAGATGGGTTTTG 941
Query 671 ATCCAACCACCTCAACGTTTGTGCACGCT-TT-GCACATGCTTTACCAAATG-AGCGACA 727
||||||||||||||| |||||| || ||| || | | || ||||| | || | |||||
Sbjct 942 ATCCAACCACCTCAAAGTTTGTCCAAGCTCTTAGGGC-TG-TTTAC-AGATTCACCGACA 998
Query 728 AAACGATTGAAGAAAAAGTTGAA-GTCTATAGAAGTATA-GG-TTTCACCGTGGACGATG 784
|||| || ||||||| |||| || || |||| ||| | || ||| | ||||| ||||
Sbjct 999 AAACAATAGAAGAAAGAGTT-AATGTGTATA-AAGGGTTCGGCTTTG-CTGTGGAAGATG 1055
Query 785 TATGGGCAATGTTCAAGAAGTGGCCACGCTCTCTGAGACACT-CGGAGAAGAAG 837
||||||||||||||||||| || || || | ||| | | | |||||||||||
Sbjct 1056 TATGGGCAATGTTCAAGAAATGTCCTTACTTTTTGA-ATAGTTCGGAGAAGAAG 1108
> AT1G62150.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22970029-22971764 REVERSE
LENGTH=1736
Length=1736
Score = 388 bits (210), Expect = 4e-107
Identities = 493/622 (79%), Gaps = 50/622 (8%)
Strand=Plus/Plus
Query 216 CAATGCTGATTCGGTTCTGGATCTTCTTAGAAGTTATGGGTTCACAGATTCTCAGATCTC 275
|||| ||||| | |||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct 439 CAATCCTGATACAGTTCTGAATCTTCTTAGAAGTCATGAGTTCACAGATTCTCAGATCTC 498
Query 276 CAGCATCA-TTAGGAGTGATCC-ACAAGTGCTTATTGCCA-ATTCTGCGACA-TCCCTGG 331
|||||||| || ||| | |||| || | ||||| | | || || ||| | | || || |
Sbjct 499 CAGCATCATTTCGGA-TTATCCAAC-ATTGCTTGTAG-CAGATGCTG-AAAATTCACTTG 554
Query 332 GTTCAAAGCTTGAGTTTTTGCAGTCCAGAGGAGCTTCAAGCTCTGAGCTCACTGAGATTG 391
|| | |||||| ||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 555 GTCCCAAGCTTCTGTTGATGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCACTGAGATTG 614
Query 392 TTTCTACAGTTCCTAAAATCTTGGGGAA-GAGAGCGGG-CAAATCTATCAGCAGATACTA 449
|||||| ||||||||||||||| || || || || ||| |||| |||| ||||||||||
Sbjct 615 TTTCTAAAGTTCCTAAAATCTTAGG-AATGAAAG-GGGACAAAAGTATCGGCAGATACTA 672
Query 450 TGATTTCATCAAAGTCATTATAGAGGCGGATAAGAGTTCCAAGTAT-GTAAAGTTATCTC 508
|||| || |||||| |||||||| ||||||||||| ||||||| | | |||| | | ||
Sbjct 673 TGATATCGTCAAAGAGATTATAGAAGCGGATAAGAGCTCCAAGT-TCGAAAAGCTGTGTC 731
Query 509 ATTCTTTGCCACAAGGTA--A--CA--AGA-T-----CAGAAATGTTTTGGTTTTGAGAG 556
|||||||||| | |||| | || ||| | ||| ||||| |||||||||||||
Sbjct 732 ATTCTTTGCCTGAGGGTAGTAAGCAGGAGAATAAAATCAGGAATGTATTGGTTTTGAGAG 791
Query 557 ATTTGGGTGTGCCTCGAAAGCG--GTTATTAC-CTTTGCTCATCTCCAACTTTC-A-GCC 611
||||||||||||||| |||| | |||||| | | |||||| |||| || | | | | |
Sbjct 792 ATTTGGGTGTGCCTC-AAAG-GTTGTTATT-CTCATTGCTCTTCTCTAA-TCACCATGTC 847
Query 612 CGTGTGTGGAAAAGAAAATTTTGATGCATCACTCAAGAAGGTCGTTGAGATGGGTTTTGA 671
| |||||||||||||| ||||| | ||||||||| ||||| |||| ||||||||||||
Sbjct 848 TGC-TGTGGAAAAGAAAAGTTTGAAGAATCACTCAACAAGGTTGTTGGGATGGGTTTTGA 906
Query 672 TCCAACCACCTC-AACGTTTGTGCACGCTTTGCACAT-GCTTTACCAAATGAGCGACAAA 729
||| ||||| || || ||||||| | ||||| ||| | ||||| | |||||||||||
Sbjct 907 TCCCACCAC-TCCAAAGTTTGTGGAAGCTTTATGCATTG-TTTACGGATTGAGCGACAAA 964
Query 730 ACGATT-GAAGAAAAAGTTGAA-GTCTATA-GA-AGTATAGGTTTCACCGTGGACGATGT 785
| || | |||||||| || || ||||| | || | | | || || || || |||||||
Sbjct 965 A-GACTAGAAGAAAAC-TTCAATGTCTACAAGAGATT-T-GGCTTAACTGTAAACGATGT 1020
Query 786 ATGGGCAA-TGTTCAAGAAGTG 806
||||| || | |||||||||||
Sbjct 1021 ATGGG-AACTTTTCAAGAAGTG 1041
> AT1G61960.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22902150-22903837 FORWARD
LENGTH=1688
Length=1688
Score = 372 bits (201), Expect = 4e-102
Identities = 489/619 (79%), Gaps = 55/619 (9%)
Strand=Plus/Plus
Query 223 GATTCGGTTCTGGA-TCTTCTTAGAAGTTATGGGTTCACAGATTCTCAGATCTCCAGCAT 281
||||| ||||| || |||||||| |||||||||||||||| | |||||||| || || ||
Sbjct 342 GATTCTGTTCT-GAGTCTTCTTACAAGTTATGGGTTCACAAAGTCTCAGATTTCAAGTAT 400
Query 282 CATTAGGAGT-GATCCACAAGTGCTT--ATTGCCA-ATTCTGCGACATCCCTGGGTTCAA 337
||||| | | | |||| | ||||| ||| | || ||| || |||| | | | | |
Sbjct 401 CATTACTA-TCTACCCACGATTGCTTGCATT---AGATGCTGAGAAATCCATTGCTCCCA 456
Query 338 AGCTTGAGTTTTTGCAGTCCAGAGGAGCTTCAAGCTCTGAGCTCACTGAGATTGTTTCTA 397
||||| ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 457 AGCTTCAGTCTCTGCAGTCCAGAGGAGCTTCAAGCTCTGAGCTCACTCAGATTGTTTCTA 516
Query 398 CAGTTCCTAAAATCTTGGGGAAGAGAGCGGG-CAAATCTATCAGCAG-ATACTATGATTT 455
| ||||||||||||||||||||||||| || ||||||||| | | | ||||||||||||
Sbjct 517 CTGTTCCTAAAATCTTGGGGAAGAGAG-GGCACAAATCTATAA-CTGTATACTATGATTT 574
Query 456 CATCAAAGTCATTATAGAGGCGGATAAGAGTTCCAAGT-ATGTAAAGTTATCTCATTCTT 514
| |||||| ||||||||| || ||||||||||| | || | | |||||||| ||||||||
Sbjct 575 CGTCAAAGACATTATAGAAGCTGATAAGAGTTCTA-GTTACGAAAAGTTATGTCATTCTT 633
Query 515 TGCCACAAGGTAACAAGA----T-----CAGAAATGTTT-TGGTTTTGAGAGATTTGGGT 564
| ||||| |||||||||| | ||||||| | | || |||||||||| ||||||
Sbjct 634 TTCCACAGGGTAACAAGAAGAATAAGATCAGAAATATCTCTG-TTTTGAGAGAATTGGGT 692
Query 565 GTGCCTCGAAAGCG---GTTATTACCTTTGCTCATCTCCA-ACTTTC-AGCCCGTGTGTG 619
||| ||| | ||| |||||| |||||||||||||| | | | | | || || ||||
Sbjct 693 GTGGCTC-A--GCGTTTGTTATTCCCTTTGCTCATCTC-AGA-TGGCCAACCTGTCTGTG 747
Query 620 GAAAAGAAA-ATTTTGATGCATCACTCAAGAAGGTCGTTGAGATGGGTTTTGATCCA-AC 677
| ||||||| |||| || | ||| ||||||||||| |||||||||||||||||||| |
Sbjct 748 GTAAAGAAAGATTT-GAAGAATCTCTCAAGAAGGTTGTTGAGATGGGTTTTGATCCGGAG 806
Query 678 CACCT-CAACGTTTGT-GCACGCTTTGC-ACATGCTTTACCAAATGAGCGACAAAACGAT 734
|| | ||| ||| || | | ||| ||| | | |||||| ||||| |||||||| ||
Sbjct 807 -AC-TACAAAGTTCGTTGAA-GCTCTGCGAGTTA-TTTACCGTATGAGTGACAAAACAAT 862
Query 735 TGAAGAAAAAGTTGAA-GTCTATAGAAG-TATAGG-TTTCACCGTGGAC-GATGTATGGG 790
||||||||||| || ||||| | ||| | |||| ||| |||| | ||||||||||
Sbjct 863 AGAAGAAAAAGTC-AATGTCTACAAAAGGT-TAGGCTTTGGT-GTGG-CTGATGTATGGG 918
Query 791 CAATGTTCAAGAAGTGGCC 809
|||| ||||||||||||||
Sbjct 919 CAATCTTCAAGAAGTGGCC 937
> AT1G62055.1 | Symbols: | pseudogene, hypothetical protein |
chr1:22940331-22940864 REVERSE LENGTH=534
Length=534
Score = 191 bits (103), Expect = 1e-47
Identities = 169/201 (84%), Gaps = 4/201 (2%)
Strand=Plus/Plus
Query 217 AATGCTGATTCGGTTCTGGATCTTCTTAGAAGTTATGGGTTCACAGATTCTCAGATCTCC 276
||| ||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 295 AATCCTGATTCTGTTCTGAATCTTCTTAGAAGTTATGGTTTCACAGATTCTCAGATCTCA 354
Query 277 AGCATCATTAGGAGTGATCCACAAG-TGCTTATTGCCA-ATTCTGCGACATCCCTGGGTT 334
|| ||||||| | | |||| | | ||||||| | | || || || ||| || | |
Sbjct 355 AGTATCATTACAAATTATCCTC-GGTTGCTTATAG-TAGATGCTAAGAAATCACTTGCTC 412
Query 335 CAAAGCTTGAGTTTTTGCAGTCCAGAGGAGCTTCAAGCTCTGAGCTCACTGAGATTGTTT 394
| |||||| || |||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 413 CCAAGCTTCAGGTTTTGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCACTGAGACTGTTT 472
Query 395 CTACAGTTCCTAAAATCTTGG 415
|||| ||||||||||||||||
Sbjct 473 CTACCGTTCCTAAAATCTTGG 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5