BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338247
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61230.1 | Symbols: | Mannose-binding lectin superfamily pr... 536 1e-151
> AT1G61230.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:22578951-22580781 FORWARD LENGTH=1518
Length=1518
Score = 536 bits (290), Expect = 1e-151
Identities = 353/383 (92%), Gaps = 5/383 (1%)
Strand=Plus/Plus
Query 382 AGAA-AGTTTGAGCTAGACTATCCAAATGAATTTATCACATCTGTGGATGGTACTTTCAA 440
|||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 804 AGAAGAGTTTGAGTTAAACTATCCCAATGAATTTATCACATCTGTGGATGGTACTTTCAA 863
Query 441 ATATTCTAGCATTAGGAAAGTGAACTGCGTTACGTCTTTGGTTTTCAAAACATCAAAAGG 500
| | ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 864 AAACTCTGGCATGAGGAAAGTGATGTGCGTTACGTCTTTGGTTTTCAAAACATCAAAAGG 923
Query 501 GAAAATCTCTCCGACATTTGGAAGCGTGACTGGGACTAAATTCGTGTTGGAGACCAAAGG 560
|| ||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 924 GAGAATTTCTCCGACATATGGAAGCGTGACTGGGACTAAATTTGTGTTGGAGACCAAAGA 983
Query 561 TTGTGCTCTAGTTGGGTTCCATGGATGGACTTTTCTTCCTTATCTTACTGCTATTGGGGC 620
||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 984 TTGTGCTCTAGCTGGGTTCCATGGATGGACTTTTCTTGGTTTTCTTACTGCTATTGGTGC 1043
Query 621 ATATTTTTCTCCT-CTGCCTCT-TCCTCCTACTGCGGAGAAACTAGAATCACAAGGTTAT 678
|||||||||| || |||||| | |||||||| |||||||||||||||| ||| |||||||
Sbjct 1044 ATATTTTTCT-CTGCTGCCT-TGTCCTCCTAATGCGGAGAAACTAGAAGCACGAGGTTAT 1101
Query 679 GACCGAGGAGCTTTTTGGGATGATGGTGTTTACGATGGTGTTAGAAAGATATATGTAGGA 738
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 GATCGAGGAGCTTTTTGGGATGATGGTGTTTACGATGGTGTTAGAAAGATATATGTAGGA 1161
Query 739 CAACGTGAAAATGGTATAGCATT 761
||| ||||||||||||| |||||
Sbjct 1162 CAATGTGAAAATGGTATCGCATT 1184
Score = 448 bits (242), Expect = 6e-125
Identities = 332/372 (89%), Gaps = 20/372 (5%)
Strand=Plus/Plus
Query 23 TAAGAGGTGGTTTTGAAGGCATTCAATACATCAAGTTCGATTATGTCAAGAGTGGACAAC 82
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 341 TAAGAGGTGGTTTTGAAGGCATTCAATACATCAAGTTCGACTATGTCAAGAGTGGACAGC 400
Query 83 CTAAAATTGGCTCAGTCCACGGTCTCTCGGGTAGAGGTTTCT-CGCA-GGCGAGGGTTAC 140
|||||||||||||||||||||||||||| || || |||| || | | | ||| | | |
Sbjct 401 CTAAAATTGGCTCAGTCCACGGTCTCTC-GG-AG-GGTTACTATG-ATGACGA--G-T-C 452
Query 141 TACGACGACGAGTCTAG-AGC--C-ATTCAAAACTAACAGAAAGACTTCTGAGCTGCTGG 196
||| | | | | || || | | | |||||||||||||| |||||||||||||||||| |
Sbjct 453 TAC-A-G-CCATTCAAGCA-CTTCAATTCAAAACTAACATAAAGACTTCTGAGCTGCTAG 508
Query 197 GATATGAAAAGGATAAGAAGTTTTCACTTGCACACAAGGGAAGGAAAATCATTGGATTTC 256
|||||||||||| ||||||||||||||||||| ||||||||| |||||| ||||| ||||
Sbjct 509 GATATGAAAAGGGTAAGAAGTTTTCACTTGCAGACAAGGGAAAGAAAATTATTGGGTTTC 568
Query 257 ATGGATATGCTGAGAAGAACCTCATTTCTCTTGGAGCATATTCCACAACAGTTTCTGTTA 316
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 569 ATGGATATGCTGAGAAGAACCTCATTTCTCTTGGAGCATATTTCACAACAGTTTCTGTTA 628
Query 317 GTAAATCGGTATGTCACGGTAGTAA-ATTAAACGAGTATTGGGATGATGGTGTTTTCGAC 375
|||||||||||||||||||||||| || || ||||| |||||||||||||||||| |||
Sbjct 629 CTAAATCGGTATGTCACGGTAGTAAGAT-AATCGAGTCTTGGGATGATGGTGTTTTTGAC 687
Query 376 GGCATAAGAAAG 387
||||||||||||
Sbjct 688 GGCATAAGAAAG 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5