BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338258
Length=2325
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61120.1 | Symbols: TPS04, GES, TPS4 | terpene synthase 04 |... 1221 0.0
> AT1G61120.1 | Symbols: TPS04, GES, TPS4 | terpene synthase 04
| chr1:22523637-22528811 FORWARD LENGTH=2899
Length=2899
Score = 1221 bits (661), Expect = 0.0
Identities = 1645/2105 (78%), Gaps = 127/2105 (6%)
Strand=Plus/Plus
Query 264 TCTGACTTCGACACTTGCTTGTGTTGTAGCACTTC-GCAAATGGAACATTGGAAGTCTTC 322
||| ||||| || |||||||||||||||||||||| | |||||||| ||||| || |||
Sbjct 367 TCTAACTTCCACTCTTGCTTGTGTTGTAGCACTTCAG-AAATGGAATATTGGGTGTTTTC 425
Query 323 ATGTTCACAAAGGGAAGAGATATATAGAAAGAAGTACGGAGAGGATTCTTGGGAAATATA 382
|| | |||||||||| ||||||||| ||||||| |||||||| ||| |||||||||| |
Sbjct 426 ATCTCCACAAAGGGACGAGATATATCGAAAGAAATACGGAGATGATAATTGGGAAATACA 485
Query 383 TCAACTCCAATAAAAAGGGATCTTGTCCTCGTTGGCTCGTTCTCATGTTCACCGGACTCG 442
|||| | || || ||||||| |||||||||| ||| | ||| ||||| ||| ||
Sbjct 486 TCAA---C--GAAGAA-GGATCTTATCCTCGTTGGTTCGCTATCAAATTCACAGGAATCC 539
Query 443 TCGAGCTTTCTCAACAACTTGGCCTACAATTTCTCTTCTCTACTCGAGTGAAGC-AAATG 501
| |||||| ||||| |||||||| |||| ||| | ||||||| ||| || | | |||||
Sbjct 540 TAGAGCTTGCTCAAAAACTTGGCTTACACTTTGTTTTCTCTAGTCG-CTGTATCGAAATG 598
Query 502 AT-AAAAACTTGTTCTT-CCAACGCCAAGAGATTTTCCACCG-GAAAAATT-GTGGATGG 557
|| ||| |||| || ||||||||||||||| |||| | |||||||| || |||
Sbjct 599 ATCAAAGGGATGTT-TTATCAACGCCAAGAGATTATCCAAAGAGAAAAATTGGTACATGA 657
Query 558 CCGTTACCAACGGCAGTCTCTGCTTACGTATCTAGAAGTATTGCCATCGACATTATACGC 617
| | || | | || | || | |||||||| || |||||||||| |||||| |
Sbjct 658 CTG-TA--ATTATAAACCTTTACTGGCCTATCTAGAGGTGTTGCCATCGAAATTATATGT 714
Query 618 CGA-AAATCAAGAACAAATC-TT-TG-AGA-TACTTGGTGA-T-TCCGATGGCTCTTTGT 670
| | |||||||||| | ||| || || ||| | | | | | | | |||||||||||||
Sbjct 715 C-ACAAATCAAGAAGACATCATTGTGAAGAGT-C-TCGACAGTAT-GGATGGCTCTTTGT 770
Query 671 TTCAATCACCCTCAGCAACTGCAGCAGCGTATATGCTCTCAGGCAATACAAAGTGTCTGG 730
|||| ||||| |||||||||||| |||||| ||||||| | |||| ||||| ||||| |
Sbjct 771 TTCAGTCACCTTCAGCAACTGCATCAGCGTTTATGCTCACTCGCAACACAAAATGTCTAG 830
Query 731 CTTATCTTCAATCTCTTGCACAAAAATGCCC-ACATGGAGTGCCACAAATTTACCCCCTG 789
||||||||||| ||| | ||||||||||| | ||||||||||||||| ||||| ||
Sbjct 831 CTTATCTTCAAAATCTCGTTCAAAAATGCCCTA-ATGGAGTGCCACAAAAGTACCCTCTC 889
Query 790 AATGAAGAACTCATCAAACTCACTATGGTCAATATAATTGATAACTA-TGGTTTAGGAGA 848
|||||||| ||||| |||||| | ||||| ||| |||| || | || ||||||||||||
Sbjct 890 AATGAAGATCTCATAAAACTCTCCATGGTTAATCTAATCGA-GAGTACTGGTTTAGGAGA 948
Query 849 GTACTTCGGTGA-AGAGATTGATCGTTTTCTTCTTCAAATTTACAAG-AGCCACGAA-AA 905
|| ||| ||| | ||||||||| | |||| ||| ||||| || || ||||| ||
Sbjct 949 GTTCTTTGGT-ATAGAGATTGAACACGTTCTGGAACAAGTTTAC-AGCCGCTACGAAGAA 1006
Query 906 GGAGGATGTCGAGAAAATGCCCAT-ATGTTTA-AAAGTAGATCAGTTGCATAAAGCCTCT 963
| ||| | |||| ||||||||| | | ||| | ||||| ||||| |||| ||||
Sbjct 1007 -AAAGATTTTGAGAGAATGCCCATGA-G-TTATCTGGCGGATCAATTGCACAAAGACTCT 1063
Query 964 CTCG-AGTTTCGAATGCTGAGAATGAACGGCTAC--GATGTTATGC-CC-AGGAGCTTTT 1018
|| | | ||||||||| | |||||| | || | | |||||| | | || || |||||||
Sbjct 1064 CTTGCA-TTTCGAATGTTAAGAATGCATGG-T-CGGGATGTT-T-CACCTAGAAGCTTTT 1118
Query 1019 GCTGGTTCCTGAATGA-CGAAGAAATC-CGAGATTATCTAGAGACAAACATTGAATGTTT 1076
|||||||| ||||||| | |||||| | ||| || || |||| | ||| || || | |||
Sbjct 1119 GCTGGTTCTTGAATGATC-AAGAAA-CTCGAAATCATTTAGAAAGAAATATAGACTCTTT 1176
Query 1077 ATT-CTTTGTAATGTTAAGTGTTTACAGAGCAACTGATCTCATCTTTCCAGGAGAGTGTG 1135
|| | |||| || |||||||||||||||| || |||||||| ||||| |||||| ||
Sbjct 1177 CTTGC-TTGTGATCCTAAGTGTTTACAGAGCCACGGATCTCATGTTTCCGGGAGAGCATG 1235
Query 1136 AAC-TCGAAGAAGCTAGAGAGTTTTCTCGGAAATTACTCGACAAAAGTCAATTTATCGAT 1194
| | || ||||||| ||||| | | ||||||| |||||||| ||| ||| | ||| |
Sbjct 1236 ATCTTC-AAGAAGCAAGAGAATATACTCGGAATTTACTCGAGAAACGTCGGTCCATCAAA 1294
Query 1195 GAACCAATTGTGCCTACTTTTCACATTAAACATGAATTAAGTACTCCATGGATGA-CTCG 1253
||| || || | || | | ||||||||||||||||||||||| | ||||
Sbjct 1295 GAA--AA-AATG---A---TT---A-T--GCATGAATTAAGTACTCCATGGAT-AGCTCG 1338
Query 1254 ACTCAAACATCTTGATCATAGGATGTGGATTGAGGACAAGGACTCAAATGCTTTCTCAAT 1313
||||||||| ||||| |||||||||||||||||||||||| ||||||||| ||| || |
Sbjct 1339 ACTCAAACACCTTGACCATAGGATGTGGATTGAGGACAAGAACTCAAATGTTTTATCCA- 1397
Query 1314 TGG-AAAAGCCTC--TT-T--GA-T-C--AGTAT-ATATAGCGACAAGCTTACTCATCTT 1362
||| ||||||||| || | || | | ||| | ||||||||||| || |||||||||
Sbjct 1398 TGGAAAAAGCCTCTTTTCTAAGACTACATAGT-TCGTATAGCGACAAACTGACTCATCTT 1456
Query 1363 GCT-CTGAGAAATTTTGAACTTCGACAAGCTATATATC-GACATGAGATGGAGGACCTGA 1420
||| | ||||| || || ||| |||||| | ||| | | | ||| ||||||| ||||
Sbjct 1457 GCTGC-AAGAAACTTCGAGTTTCAACAAGCCAAATA-CTGTCGCGAGCTGGAGGAACTGA 1514
Query 1421 TGACGTGGGTGAAGAAATCAGGACTTAACGATATCGGATTCGGAAGAGAGAAGACAACAT 1480
| |||||| ||||||| ||||||| ||||| || ||||| ||||||||||||||||
Sbjct 1515 CAATGTGGGTAAAGAAATGGGGACTTAGTGATATTGGTTTCGGTAGAGAGAAGACAACAT 1574
Query 1481 ATTGCTATTTTGCAGCTTCATCAAGCACCTCATT-ACCTATTAAAGCCGCAACT-AATAT 1538
|||| || |||||| | | | | || || || |||| | || || | | ||| |
Sbjct 1575 ATTGTTACTTTGCAAC-T-GT---G-ACTTCGTTGCCCTA-TGAATATGCCATTAAAT-T 1626
Query 1539 TCGTAAGCTTATGGCAAAGAGTGGGATCCTTATTACAGTTGCTGATGATTTCTTCGACGA 1598
| |||||||| ||||| | || ||||| || ||| |||| ||||| |||||||| ||
Sbjct 1627 TGGTAAGCTTGCAGCAAAAACTGCTATCCTCATCACAATTGCCGATGACTTCTTCGATGA 1686
Query 1599 AGAAGGTTCTTTTGATGAATTGGAAGCG-CTTACTAAAGCTGTTATAAGATGGGAAGGAG 1657
| ||||||| || |||| ||||||| | ||||||||||| ||| |||||||||||||||
Sbjct 1687 AAAAGGTTCCTTCAATGACTTGGAAG-GTCTTACTAAAGCAGTTTTAAGATGGGAAGGAG 1745
Query 1658 AAGAGCTTAAAGGTTACGGCAATATCATATTCAAAGCACTTGATGACCTCGTAAAAGTGA 1717
||||||||||| |||||||||||||||| || | |||||||||||| | |||| || ||
Sbjct 1746 AAGAGCTTAAAAGTTACGGCAATATCATTTTTAGAGCACTTGATGATATTGTAAGAGAGA 1805
Query 1718 CTGCTGAA-ACTTGCCTTAAGGGTCACGGAACTGACATAACAAACCATCTACGCAACATT 1776
|||| || ||||| | || | ||| ||| ||||||| |||||| ||||||||
Sbjct 1806 CTGC-AAATACTTGTCGTACGCACCACAAAACCGACATAATTGTCCATCTTCGCAACATC 1864
Query 1777 TGGAGCGAAACATTTGAGTCGTGGCTACGTGAAGCCAAATGGAGTAAGAAGGGATACATA 1836
||| | ||||||||||||||||||||||||||||| |||||||||| |||||| ||| |
Sbjct 1865 TGGGGTGAAACATTTGAGTCGTGGCTACGTGAAGCTGAATGGAGTAAAAAGGGACACACA 1924
Query 1837 CCATCGATGGAAGAATATCTTCGAAATGGAATGATCTCAATCGCAACACACACCATTGTT 1896
| || ||||| |||||| ||||||| |||||||||||||||||| |||||||||||| |
Sbjct 1925 TCGTCAATGGACGAATATATTCGAAACGGAATGATCTCAATCGCAGCACACACCATTGCT 1984
Query 1897 CTT-CC-TACTTTGTGTCTCATGGAATCTTGTTTTCCCCAACA-CAAACTCAAACCCGGA 1953
||| || | || |||||||||||| ||||||||||||| || |||||||||||| |||
Sbjct 1985 CTTTCCAT-CTCA-TGTCTCATGGAACCTTGTTTTCCCCA-CAACAAACTCAAACCGGGA 2041
Query 1954 AATTATGATAACATAACAACATTGCTCATGACCATTAC-TCGACTCCTTAA-TGATCTAC 2011
||||| |||| |||||| ||||||||||||| ||| || |||||| |||| ||| ||||
Sbjct 2042 AATTACGATAGCATAACTACATTGCTCATGATCAT-ACCTCGACTT-TTAAATGACCTAC 2099
Query 2012 AAAGTTACCAGAAGGAACAAGAACAAGGCAAGATCAACTCCGTGCTACTCCACATGAAAA 2071
||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||| |
Sbjct 2100 AAAGTTATCAGAAGGAACAAGAACAAGGGAAGATGAACTCCGTGCTGCTCCACATGAAGA 2159
Query 2072 ATCATAGTGGTTTGGAGATTGAGGATTCGGTTGCTTGTATTGAAAAGATCATTGATTTGA 2131
||||| ||| ||||||||||||| ||| | ||| ||| |||||||| || |||| |
Sbjct 2160 ATCATCCAGGTCTGGAGATTGAGGACTCGATCGCTCATATCGAAAAGATTATCGATTCAA 2219
Query 2132 AGAGGAAAGAATTTATGGAGCATGT-CTTAAG--GAATAAATTCAGTGATTTGTCTAAAC 2188
| |||||||| ||| |||||||||| || | | || | | | || |||||| | ||||
Sbjct 2220 AAAGGAAAGAGTTTCTGGAGCATGTACT-A-GTTGA-TGGACTAAGCGATTTGCCAAAAC 2276
Query 2189 CATGCAAAGATATTCACATGTCTT-TATGCAAAGTTTTTGAGATGTTCTTCAACAAAAAG 2247
| ||||| || ||||||||||||| | || ||||| || |||||||| || ||||| |||
Sbjct 2277 CGTGCAAGGAGATTCACATGTCTTGT-TGTAAAGTCTTCGAGATGTTTTTTAACAAGAAG 2335
Query 2248 AATCGTTATGATTCGGATACGGAGATGCTTGAAGACATTAAGAAGGCTCTTTACGATCCC 2307
|| ||||||||||| | |||||||||||| | ||||||||||||||||| || ||||||
Sbjct 2336 AACCGTTATGATTCAAACACGGAGATGCTTCATGACATTAAGAAGGCTCTCTATGATCCC 2395
Query 2308 ATCAA 2312
|||||
Sbjct 2396 ATCAA 2400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115411052955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5