BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338279
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74090.1 | Symbols: SOT18, ATSOT18, ATST5B | desulfo-glucosi... 1007 0.0
> AT1G74090.1 | Symbols: SOT18, ATSOT18, ATST5B | desulfo-glucosinolate
sulfotransferase 18 | chr1:27862909-27864193 FORWARD
LENGTH=1285
Length=1285
Score = 1007 bits (545), Expect = 0.0
Identities = 878/1033 (85%), Gaps = 45/1033 (4%)
Strand=Plus/Plus
Query 53 TACCAAGTAACCACGAGACCAAGACAGAATCAACAGAGTTCGAGAAGAATCAGAAACGGT 112
|||| ||| || |||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 144 TACCGAGTCACGACGAGACCAAGACAGAATCAACAGAGTTCGAGAAAAATCAAAAACGGT 203
Query 113 A-CAAAGACCTAATCGCTACCTTTCCTCAC-ACGAAAGGCTGGAGACCGAAAG-GTCCGT 169
| ||| ||||| ||| | || ||||||||| | |||||||||||||||||||| | || |
Sbjct 204 ATCAA-GACCTCATCTCCACGTTTCCTCACGA-GAAAGGCTGGAGACCGAAAGAGCCCCT 261
Query 170 TGATAGAGTACCATGGTTGCTGGTT-CGTACAGCCGCTCTTAGAAGGTTGCCTTCACGCG 228
||| ||||| ||||| ||||| | ||| | | ||| | |||||||| ||||||||
Sbjct 262 -GATCGAGTATGGTGGTTACTGGTGGC-TACCGTCTCTCCTCGAAGGTTGTATTCACGCG 319
Query 229 CAAGAGTTCTTCCAAGCAAGACCCATTGACTTCCTCATTTGTAGCT-CCGCAAAGACAGG 287
||||||||||| |||||| |||||| |||||||||| | ||||||| || ||||||||||
Sbjct 320 CAAGAGTTCTTTCAAGCACGACCCAGTGACTTCCTCGTCTGTAGCTACC-CAAAGACAGG 378
Query 288 TACCACTTGGCTCAAGGCTCTAACTTTCGCCATCGTCAA-TCGAACTTGCTTCGACGATT 346
|||||||||||||| || || ||||||||||||| ||| ||| | ||||||| ||||
Sbjct 379 CACCACTTGGCTCAAAGCCCTGACTTTCGCCATCG-CAAATCGTTCCCGCTTCGATGATT 437
Query 347 CCTCAAACCCTCTCCTAAAACGTAACCCTCATGAGCTTGTTCCTTTCATTGAGA-ACGAA 405
|||| ||||||||||| |||||||||||||| ||| ||||||||| |||||||| | ||
Sbjct 438 CCTCCAACCCTCTCCTGAAACGTAACCCTCACGAGTTTGTTCCTTACATTGAGATA-GA- 495
Query 406 TTTGC-TTTCTTCCCTCAAGTTGATGTTATCAAAGACAAAGGAAACACTCTGTTCTCTAC 464
||| | |||||||||| ||||||||||| ||||||||||||| ||||||||||| || ||
Sbjct 496 TTTCCCTTTCTTCCCTGAAGTTGATGTTCTCAAAGACAAAGGGAACACTCTGTTTTCGAC 555
Query 465 TCATATCCCGTACGGGTTATTACC-GAAATCTATTGCGAACTCCGGTTGTAAGATGGTTT 523
||||||||| |||| ||||||||| || || ||| ||| |||||||||||||||||||
Sbjct 556 TCATATCCCATACGAGTTATTACCTGAT-TCGGTTGTGAAATCCGGTTGTAAGATGGTTT 614
Query 524 ACATTTGGAGAGACCCGAAGGACACTTTCATCTCCATGTGGACTTTC-TTCCAAAAGCAA 582
|||| |||||||| || |||||||||||||||||||||||||||||| ||| | ||| ||
Sbjct 615 ACATATGGAGAGAACCAAAGGACACTTTCATCTCCATGTGGACTTTCCTTC-ACAAGGAA 673
Query 583 AGGTCAGA-CTTTGGCCCTCTCAATAGTCTTGAAGAGTCTTTTGATATGTTTTGTCGAGG 641
||| |||| ||| || ||| ||| | |||||| ||||||||||||||||| ||||| ||
Sbjct 674 AGGACAGAGCTT-GGACCTGTCAGCAATCTTGAGGAGTCTTTTGATATGTTCTGTCGTGG 732
Query 642 TACT-TCTGTGTACGGTCCTTATCT-AGATCATGTCTTGGGGTATTGGAAAGCTTACCAA 699
| || |||| ||| ||||||||||| | ||||| || ||| |||||||||||| ||||||
Sbjct 733 T-CTGTCTGGGTATGGTCCTTATCTTA-ATCATATCCTGGCGTATTGGAAAGCATACCAA 790
Query 700 GAGAATCCAAATCAG-ATATTGTTCCTCAAGTACGAGACAATGAGAGCTGATCCTTTACC 758
||||||||| || || || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 791 GAGAATCCAGAT-AGGATCTTGTTCCTCAAGTACGAGACGATGAGAGCTGATCCTTTACC 849
Query 759 GCATGTGAAGAGAT-TGGCTCAGTTTATGGGTTACGGATTCACAGCTGAGGAAGAGAAGA 817
| | |||||||| | ||||| ||||||||||| | ||||||||||| ||||||||| |||
Sbjct 850 GTACGTGAAGAG-TCTGGCTGAGTTTATGGGTCATGGATTCACAGCCGAGGAAGAGGAGA 908
Query 818 AAGATGTTGTTGAGAAAGTTGTGAATCTTTGCAGTTTCGAGACGTTAAAGAATCTTGAAG 877
||| ||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 909 AAGGTGTTGTTGAGAAAGTGGTGAATCTTTGCAGCTTCGAGACGTTGAAGAATCTTGAAG 968
Query 878 -TGAACGAAGGAGAGAAA-ATCAGAGAGGA-CATTGCTTCG-GTTCATTGGCCGAATAGC 933
| ||| |||| |||||| | ||||||||| | | || | ||| | | | |||||||
Sbjct 969 CT-AACAAAGGGGAGAAAGA-CAGAGAGGATCGTC-CTG-GTGTTTAC-G-C-GAATAGC 1021
Query 934 GCGTATTTCAGGAAGGGAATGGTTGGAGATTGG-CACAACTACCTGACTCCGGAGATGGC 992
|||||||||||||| |||| ||| ||||||||| | ||||| |||||||||||||||||
Sbjct 1022 GCGTATTTCAGGAAAGGAAAGGTGGGAGATTGGTCG-AACTATCTGACTCCGGAGATGGC 1080
Query 993 AGCTCGTATCGATGGGCTAATGGAAGAGAAATTTAAGGGCTCTGGTTTGCTTGAACATGA 1052
|||||||| |||||| ||||||||||||||||||||||| | || |||||||||||||
Sbjct 1081 TGCTCGTATAGATGGGTTAATGGAAGAGAAATTTAAGGGCACCGGCTTGCTTGAACATGG 1140
Query 1053 TATA-GA-TGACT 1063
|| | || |||||
Sbjct 1141 TAAATGAATGACT 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5