BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338287
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large sub... 774 0.0
AT1G60830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 396 2e-109
> AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subunit,
splicing factor | chr1:22423909-22428022 FORWARD LENGTH=2085
Length=2085
Score = 774 bits (419), Expect = 0.0
Identities = 584/663 (88%), Gaps = 14/663 (2%)
Strand=Plus/Plus
Query 50 TTGAAGGTCCTGACCGGATTTTTGTTGGCGGGCTTCCCCATTACTTCACAGATGCACAAA 109
|||| ||||| ||||| |||||||| ||||| |||||| ||||||||||||| | ||| |
Sbjct 1211 TTGAGGGTCCCGACCGCATTTTTGTGGGCGGACTTCCCTATTACTTCACAGAGGTACAGA 1270
Query 110 TCAGGGAGATTTTGGAGTGTCTTGGTCCTCTACGAGGTTTCAACTTGCTTAAAGACAGAC 169
|||||||| | ||||||| | |||| || ||| |||||||||||||| | ||||||||
Sbjct 1271 TCAGGGAGCTCTTGGAGTCTTTTGGGCCCCTAAGAGGTTTCAACTTGGTCAAAGACAGGG 1330
Query 170 AAACTGGAGACTCCAAGGGATATGCCTTCTGTGTTTACCAAGATCCTTCAGTAACAGATA 229
| |||||| | || ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1331 AGACTGGAAATTCGAAGGGATATGCATTCTGTGTTTACCAAGATCCGTCAGTAACAGATA 1390
Query 230 TTGCATGTGCCGCTCTTAACGGGATTAAGATTGGTGATAAGACACTTGCAGTTAGGCGTG 289
|||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1391 TTGCATGTGCCGCTCTAAACGGGATTAAGATGGGTGATAAGACACTTACAGTTAGGCGTG 1450
Query 290 CAATGCAAGGTACGATTCAACCGAAACCCGAGCAAGAAGAAGTCTTACAACAGATTGCTC 349
|||| || ||| | |||||||| ||||||||||||||||||||||||| | | || |
Sbjct 1451 CAATCCAGGGTGCAATTCAACCTAAACCCGAGCAAGAAGAAGTCTTACTTTA--T-GCCC 1507
Query 350 AACAACAGATTGCCTTGCAGAGACTTATGTTAGAACCAGGAGGTATTCCCACTAAGATTG 409
||||||||||||| |||||||| |||||||| |||||||||||| |||||| |||||||
Sbjct 1508 AACAACAGATTGCTTTGCAGAGGCTTATGTTCCAACCAGGAGGTACTCCCACCAAGATTG 1567
Query 410 TTTGTTTGAGTCAATTGGTTACAATTGATAATCTTAGAAACTATGAAGAATATGCAGACA 469
| ||||||| |||| |||||||| |||| |||||||| || |||||||||||||||| |
Sbjct 1568 TCTGTTTGACTCAAGTGGTTACAGCTGATGATCTTAGAGACGATGAAGAATATGCAGAGA 1627
Query 470 TAATG-----C--G--ACAAGAAGGTGGAAAATTCGGTAACTTAGTGAATGTTGTGATTC 520
||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 TAATGGAGGACATGCGACAAGAAGGTGGAAAATTCGGTAACTTAGTGAATGTTGTGATTC 1687
Query 521 CGAGGCCTAATCCAGATCATGGTCCAACACCAGGAGTTGGAAATGTTTTCTTAGAGTATG 580
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 1688 CGAGGCCTAATCCAGATCATGACCCAACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATG 1747
Query 581 CGGATGTCGATGGCTCATCAAAGGCCAGA-CTGGAGATGAATGGAAGAATAGTTGGAGGA 639
||||||| ||||||||||||||||||||| | || |||||||||||||| | ||||||||
Sbjct 1748 CGGATGTGGATGGCTCATCAAAGGCCAGATCGGG-GATGAATGGAAGAAAATTTGGAGGA 1806
Query 640 TACCAAGTGGTGGCTGTGTATTACCCCGAGGACAAGTATGCTCAAGGCGACTACGAAGAC 699
||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1807 AACCAAGTAGTGGCTGTGTATTACCCCGAAGACAAGTATGCCCAAGGCGACTACGAAGAC 1866
Query 700 TGA 702
|||
Sbjct 1867 TGA 1869
> AT1G60830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22395058-22395603 REVERSE LENGTH=336
Length=336
Score = 396 bits (214), Expect = 2e-109
Identities = 298/337 (88%), Gaps = 11/337 (3%)
Strand=Plus/Plus
Query 376 ATGTTAGAACCAGGAGGTATTCCCACTAAGATTGTTTGTTTGAGTCAATTGGTTACAATT 435
|||||| |||||||||| | |||||| |||||||| ||||||| |||| |||||||| |
Sbjct 1 ATGTTACAACCAGGAGGCACTCCCACCAAGATTGTCTGTTTGACTCAAGTGGTTACAGCT 60
Query 436 GATAATCTTAGAAACTATGAAGAATATGCAGACATAAT----G-C--GA--CAAGAAGGT 486
||| | |||||| || ||| |||||||||||||||||| | | || |||||||||
Sbjct 61 GATGACCTTAGAGACGATGCAGAATATGCAGACATAATGGAGGACATGAGCCAAGAAGGT 120
Query 487 GGAAAATTCGGTAACTTAGTGAATGTTGTGATTCCGAGGCCTAATCCAGATCATGGTCCA 546
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 GGTAAATTCGGTAACTTGGTGAATGTTGTGATTCCGAGGCCTAATCCAGATCATGACCCA 180
Query 547 ACACCAGGAGTTGGAAATGTTTTCTTAGAGTATGCGGATGTCGATGGCTCATCAAAGGCC 606
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 ACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATGCGGATGTGGATGGCTCATCAAAGGCC 240
Query 607 AGA-CTGGAGATGAATGGAAGAATAGTTGGAGGATACCAAGTGGTGGCTGTGTATTACCC 665
||| | || |||||||||||||| | |||||||| ||||||| |||||||||||||||||
Sbjct 241 AGATCGGG-GATGAATGGAAGAAAATTTGGAGGAAACCAAGTAGTGGCTGTGTATTACCC 299
Query 666 CGAGGACAAGTATGCTCAAGGCGACTACGAAGACTGA 702
||| ||||||||||| |||||||||||||||||||||
Sbjct 300 CGAAGACAAGTATGCCCAAGGCGACTACGAAGACTGA 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5