BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338323
Length=2040
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60540.1 | Symbols: DRP4B | pseudogene of the dynamin family... 1194 0.0
AT1G60500.1 | Symbols: DRP4C | Dynamin related protein 4C | chr... 1149 0.0
AT1G60510.1 | Symbols: DRP4D | pseudogene, putative interferon-... 675 0.0
AT1G60505.1 | Symbols: | other RNA | chr1:22294677-22297220 RE... 547 1e-154
AT1G60545.1 | Symbols: | other RNA | chr1:22302492-22305156 FO... 283 4e-75
> AT1G60540.1 | Symbols: DRP4B | pseudogene of the dynamin family
| chr1:22302486-22304985 REVERSE LENGTH=2031
Length=2031
Score = 1194 bits (646), Expect = 0.0
Identities = 1552/1977 (79%), Gaps = 111/1977 (6%)
Strand=Plus/Plus
Query 98 AAGCACCAATTATATCTTCTTATGATGACCGA-ATTAGGCCGTTGCTTGACACTGTTGAC 156
||||||||||| |||| ||||| |||||| | || |||||||||||||||||||| |||
Sbjct 98 AAGCACCAATTGTATCATCTTACAATGACC-ACATCAGGCCGTTGCTTGACACTGTGGAC 156
Query 157 AAGTTGAGGAACCTGAATGTGATG-AGTGAAGGGATCCAGCTTCCCACCATTGTTGTGGT 215
||| | |||||| ||||||||||| | |||||||| |||||||| ||||||||||||||
Sbjct 157 AAGCTCAGGAACTTGAATGTGATGCA-AGAAGGGATTCAGCTTCCTACCATTGTTGTGGT 215
Query 216 TGGAGACCAGTCCTATGGGAAGTCTAGCGTTCTCGAGTCGCTGGCCAG-AATCAGTTTGC 274
|||||||||||||| |||||||| || || ||||||||| |||| || |||||||||||
Sbjct 216 TGGAGACCAGTCCTCGGGGAAGTCGAGTGTCCTCGAGTCGTTGGC-AGGAATCAGTTTGC 274
Query 275 CTCGCGGGGAAGGAATCTGCACTAGGGTTCCTCTTGTGATGAGGCTTCAGCAGA-GCTCT 333
| || ||| |||||||||||||||| ||||||||||| |||||||| ||| ||| | ||
Sbjct 275 CACGTGGGCAAGGAATCTGCACTAGAGTTCCTCTTGTCATGAGGCTCCAG-AGAAG-TCG 332
Query 334 A-GCTTTGAACCTGAGATCTGGCTTGAGTACGAACTGTACGGTAAGAATAAAGTTGATAA 392
| || |||||||||||||||||| ||||||| || || || ||| ||| ||
Sbjct 333 AAGCCCTGAACCTGAGATCTGGCTGGAGTACGG--TG-AC---AA-AATT--GTTCCTAC 383
Query 393 AACTGACGAGGAGCACATTGCTGAAGCTATTCGCAAAGCAACCGATGCT-ATTGCAGGAT 451
| || ||||| ||||||||| || ||||| | ||| || || | | || || ||||
Sbjct 384 A---GATGAGGAACACATTGCTCAAACTATTTGTGCAGCTACAGACG-TGATAGCTGGAT 439
Query 452 CTGGAAAAGGGGTCTCAGACACTCCC-TTGACCCTCCATGTGATGAAAGCTGGCGTTCCA 510
|||| |||||||| |||||||| ||| || || |||||||||| ||| ||||| ||||||
Sbjct 440 CTGGCAAAGGGGTTTCAGACACACCCCTT-ACGCTCCATGTGAAGAAGGCTGGTGTTCCA 498
Query 511 AATCTTACCATGATTGACCTCCCCGGGATTGTCCG-GATTGCTGTTGAT-GGCCAGCCGG 568
|| |||| ||| |||| ||||| || || ||| | || |||| || || ||||| |
Sbjct 499 GATATTACTATGGTTGATCTCCCTGGAATAACCCGTG-TTCCTGT-GAACGGACAGCCTG 556
Query 569 AAAATATATATGAGCAAATTTCT-GCTATGATTATGAAGTACATTGAGCCTCAGGAAACA 627
||||||| ||||| || ||||| | ||| |||||||||| |||||||| || ||| ||
Sbjct 557 AAAATATTTATGAACAGATTTCCAGG-ATGGTTATGAAGTATATTGAGCCACAAGAATCA 615
Query 628 ATAATCCTCAACGTTCTATCAGCT-CAAGTTGATTTCACCACCTGTGAATCCATCCGTAT 686
|| || ||||| ||||| ||||| || ||||||||||| || |||||||||||| | ||
Sbjct 616 ATCATACTCAATGTTCTGTCAGCGACA-GTTGATTTCACTACTTGTGAATCCATCAGAAT 674
Query 687 GTCTAGGCAAGTTGACAAAACTGGTGAACGAACTCTGGCTGTTGTGACGAAAGTC-GACT 745
||||| || || |||||||| ||||| || ||||||||||| || || |||| | |||
Sbjct 675 GTCTAAACAGGTGGACAAAACCGGTGAGCGGACTCTGGCTGTAGTCAC-AAAGGCTGACA 733
Query 746 TAGCTCCAGAAGGTCTCCTTCACAAAGTAACTGCAAATGATGTGAGTATCGGACTCGGTT 805
| ||||| ||||| || || || |||||||||||| ||||||||||||||||||| ||||
Sbjct 734 TGGCTCCTGAAGGGCTTCTCCAGAAAGTAACTGCAGATGATGTGAGTATCGGACTTGGTT 793
Query 806 ATGTCTGTGTCAGGAACCGTATAGGAAACGAAACCTATGAAGAAGCTAGGTTACAAGAAG 865
|||||||||| || ||||| ||||| | |||||||||||||||||| | | |||||||
Sbjct 794 ATGTCTGTGTTAGAAACCGGATAGGGGAGGAAACCTATGAAGAAGCTCGAATGCAAGAAG 853
Query 866 AGTTGCTTTTCAAGAAGCATCC-A--CTTTCCATGATTGACGATGAGATTGTTGGTATTC 922
|||| ||||||| || || || | ||||| ||||| | ||||||||||| ||||| |
Sbjct 854 AGTTACTTTTCAGGACCCACCCGATGCTTTCAATGATCAATGATGAGATTGTGGGTATCC 913
Query 923 CGGTTTTAGCTCAGAAGTTAACACAAATCCAGGCGACA--ATGATCACCC-GATGTTTGC 979
| || |||||||||||| | || || ||||||| || | ||||| | | | |||||||
Sbjct 914 CCGTCTTAGCTCAGAAGCTGACGCAGATCCAGG-GA-ATGATGAT-ATCTAGGTGTTTGC 970
Query 980 CAGATATAGTACAG-A-GAATCAATGAAAAAATGGACAA-CAGTACCGCCG-AGTTGAAC 1035
| || || | | || | || | |||| || ||||| || |||| | | | |||| |||
Sbjct 971 CGGAAATCGAA-AGGAAGA-TAAATGTGAAGATGGA-AATCAGTGTC-CTGGAGTTTAAC 1026
Query 1036 AAGCTACCAA-AGGTAATGACATCTACAAGGGAAGCTTTGTTCACTTTCCTGCG-TATCA 1093
||||| |||| || | ||| | ||||| ||||||| || | || | || | |||||
Sbjct 1027 AAGCTCCCAATAG-TCATGGCTTCTACTGGGGAAGCATTAATGTCTCTAATG-GATATCA 1084
Query 1094 TTGGTTCCACCAAAGAATCACT-CATAAAAATT-TTAGTCCAAGGCGATTTTTCTGAATT 1151
||||||| |||| || || || | ||| ||| || ||||| || ||||| |||||||
Sbjct 1085 TTGGTTCTGCCAAGGAGTCTCTAC-TAAGAATCCTT-GTCCATGGAGATTTCTCTGAATA 1142
Query 1152 TCC-AGATGATCAAT-GCATGCACT-CAACCGCGCGTTTGGCTGATATGTTGGGCCAATT 1208
|| | | |||||| | ||||| | || | || || |||||||| ||||| || |||
Sbjct 1143 CCCTA-ACGATCAAAAG-ATGCATTGCA-CAGCTCGCTTGGCTGAAATGTTAAACCGATT 1199
Query 1209 CTCAGACAATCTACAAGCACACCCCCAAAACGTGACGGATGAGTTCTTGATGGATGAAAT 1268
|||||||||||| || ||||| || ||| |||||| || ||||||||||||||||||||
Sbjct 1200 CTCAGACAATCTGCAGGCACAGCCTCAAGCCGTGACAGAAGAGTTCTTGATGGATGAAAT 1259
Query 1269 CAAAGTACT-AGAAGAGTGCAAATCTATCGGATTGCCTAATTTCATCCCAAGATCTGCCT 1327
|||||| || ||||||| |||||| |||||||||||||||||| || ||||||||| | |
Sbjct 1260 CAAAGT-CTTAGAAGAGCGCAAATGTATCGGATTGCCTAATTTTATACCAAGATCTTCTT 1318
Query 1328 TCATAGCTATCCTTTCACAACGTATTGATGCAATTCAT-ACTAAGCCGGTTGAGTTCATC 1386
|| |||| ||||||||||||| | | |||| || || || ||||| ||||||||||||
Sbjct 1319 TCTTAGCAATCCTTTCACAACATGTGGATGGGATACAAGAC-AAGCCAGTTGAGTTCATC 1377
Query 1387 AGAG-AGACATTGGACTACATTGAAGGCGTTCTATTATCTGTTC-TTACCAAATACTCTG 1444
| || ||| || |||||||||||||| |||||| | ||| || | |||| | ||| ||||
Sbjct 1378 A-AGGAGATATGGGACTACATTGAAGTCGTTCTGTCATCAGT-CATTACGACATATTCTG 1435
Query 1445 AAAACTT-CCCACAGATTCAATCCTC-ACTCAAAAGAGCTGGTCGGAATCTAATCACCAA 1502
| ||||| ||| |||||||||||||| | ||||||| |||||||| |||||||| | ||
Sbjct 1436 ACAACTTTCCC-CAGATTCAATCCTCCA-TCAAAAGGGCTGGTCGTAATCTAATGAGCAG 1493
Query 1503 GA-TCAAGGAACAATCTGTGAGCAGAGTAATCGAAATCATCGAGATGGAGAAACTAACCG 1561
|| | ||||||| || |||| | ||||||| || ||| | ||||||||||| || ||||
Sbjct 1494 GACT-AAGGAACGTTCCGTGAACTGAGTAATTGAGATCGTTGAGATGGAGAAGCTTACCG 1552
Query 1562 ACTACACATGTAACCCTGAGTATATGACAGTATAC-AC-CGAGAAGATTGC-TG-C-GCA 1616
| |||||||||||||| || || ||||| | | || | |||||| | | | |||
Sbjct 1553 ATTACACATGTAACCCAGATTACATGACT-TCTTGGACTC-AGAAGACAACCTCACAGCA 1610
Query 1617 AGGAAGCTTCATCACTGCTGTACATAGCA--AT-A-ATTCGAACATCTGCAACTTAAATG 1672
| || |||||||| | |||| | ||| || | | | ||| | | || || |
Sbjct 1611 A--AA-CTTCATCAATTCTGTGT-T-GCACGATGAGAATA-AACCTGAG-AATTTTGCTT 1663
Query 1673 CATCTGGATTCGGAAATGTTCAGATTTCGCATCTAAGGAAGTATGATGCGCAATTGCTT- 1731
| |||||||||| |||| |||| |||||||| | |||||| | || || |||||
Sbjct 1664 TACCTGGATTCGGGGATGTGAAGATCTCGCATCTGCGAAAGTATCACGCTCATTTGCTGC 1723
Query 1732 AGGCAAGCGTTTGACATGAAGGTTAGAATCACATCTTACTGGATAATCGTCGTACGAAGG 1791
| ||||||||||| |||||| | || |||||||||||||||| ||||| | ||||||
Sbjct 1724 AA-CAAGCGTTTGATATGAAGATGAGGATCACATCTTACTGGACGATCGTATTGCGAAGG 1782
Query 1792 ATTGTGGATAGCCTTGCTCTGTATCTTCAATTCTCTGTGAAGAATCTTGTGAACAGCCAA 1851
|||| |||| ||||||||| || ||||||||||||||||||||||| || ||||| ||
Sbjct 1783 GTTGTCGATAACCTTGCTCTCTACCTTCAATTCTCTGTGAAGAATCTGGTCAACAGTCAG 1842
Query 1852 TTACAGAAGGAGATCGGGGAGGA-ATTGGTGAATTCATG---TGGCGGAGGAGA-AGTTG 1906
|| ||||||||||| | || ||| || |||| || || | |||||||||| | || |
Sbjct 1843 TTTCAGAAGGAGATTGTGGCGGAGAT-GGTGGATCCAAGAGCTGGCGGAGGA-ATAGAT- 1899
Query 1907 AGAAGATGCTAGAGGAGTCTCCGTCGGTGGCGAGTAAGAGGGAGAAGCTGAAGAACAGTA 1966
|| |||||| ||||| || |||||||||||||| |||||||||||||||||||| |||
Sbjct 1900 AG--GATGCTGGAGGAATCACCGTCGGTGGCGAGCAAGAGGGAGAAGCTGAAGAATAGTC 1957
Query 1967 TCAAGCTTCTGAAGGAGTGTAAGGATGCTGTGGCTGCCATTGTTGATCAGAACTCTG 2023
|||||||||||||||| | ||||| | |||||| ||||||||||||||||||||||
Sbjct 1958 TCAAGCTTCTGAAGGAATCCAAGGACGTTGTGGCGGCCATTGTTGATCAGAACTCTG 2014
> AT1G60500.1 | Symbols: DRP4C | Dynamin related protein 4C | chr1:22291582-22293964
FORWARD LENGTH=2152
Length=2152
Score = 1149 bits (622), Expect = 0.0
Identities = 1534/1964 (78%), Gaps = 104/1964 (5%)
Strand=Plus/Plus
Query 98 AAGCACCAATTATATCTTCTTATGATGACCGAATTAGGCCGTTGCTTGACACTGTTGACA 157
||||||| ||||||||||| ||| | || || || |||||||||||||||||||| ||||
Sbjct 95 AAGCACCGATTATATCTTCATATAACGATCGGATAAGGCCGTTGCTTGACACTGTGGACA 154
Query 158 -AGTTGAGGAACCTGAATGTGATGAGTGAAGGGATCCAGCTTCCCACCATTGTTGTGGTT 216
| || |||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||||
Sbjct 155 GACTT-AGGAACCTCAATGTCATGAGAGAAGGGATCCATCTTCCCACCATTGTCGTGGTT 213
Query 217 GGAGACCAGTCCT-ATGGGAAGTCTAGCGTTCTCGAGTCGC-TGGCCA-GAATCAGTTTG 273
||||||||||||| | |||||||| || ||||| || || | ||| || ||||||||||
Sbjct 214 GGAGACCAGTCCTCA-GGGAAGTCAAGTGTTCTTGAATC-CTTGG-CAGGAATCAGTTTA 270
Query 274 CCTCGCGGGGAAGGAATCTGCACTAGGGTTCCTCTTGTGATGAGGCTTCAGCAGA-GCTC 332
||||| || |||||||||||||||||||||||||||| ||||||||||||| || ||||
Sbjct 271 CCTCGTGGCCAAGGAATCTGCACTAGGGTTCCTCTTGTCATGAGGCTTCAGC-GAAGCTC 329
Query 333 TAGCTTTGAACCTGAGATCTGGCTTGAGTACGAACTGTACGGTAAGAATAAAGTTGATAA 392
|||| |||||||||||| ||||||||||| ||| | || ||| | ||| ||
Sbjct 330 TAGCCCTGAACCTGAGATTTGGCTTGAGTAT-AAC-G-ACA--AAG--TG--GTTCCTA- 379
Query 393 AACTGACGAGGAGCACATTGCTGAAGCTATTCGCAAAGCAACCGATGCT-ATTGCAGGAT 451
| |||||||| ||||| |||||||||||||| ||||| |||| | ||||| ||||
Sbjct 380 --CGGACGAGGAACACATCGCTGAAGCTATTCGTGCTGCAACAGATG-TGATTGCTGGAT 436
Query 452 CTGGAAAAGGGGTCTCAGACACTCCCTTGACCCTCCATGTGATGAAAGCTGGCGTTCCAA 511
|||| |||||||||||||| |||| |||||||||||||||| ||| ||||| ||||||
Sbjct 437 CTGGTAAAGGGGTCTCAGATGCTCCATTGACCCTCCATGTGAAGAAGGCTGGTGTTCCAG 496
Query 512 ATCTTACCATGATTGACCTCCCCGGGATTG-TCCG-GATTGCTGTTGA-TGGCCAGCCGG 568
| ||||| ||| | || || ||||| || || | | || | || || ||| |||||||
Sbjct 497 ACCTTACGATGGTCGATCTTCCCGGTATAACTC-GAG-TTCCAGT-GAATGGACAGCCGG 553
Query 569 AAAATATATATGAGCAAATTTCTGCTATGATTATGAAGTACATTGAGCCTCAGGAAACAA 628
||||||| |||||||| || |||| ||||||||| |||||||||||||||| ||| |||
Sbjct 554 AAAATATTTATGAGCAGATCTCTGGGATGATTATGGAGTACATTGAGCCTCAAGAATCAA 613
Query 629 TAATCCTCAACGTTCTATCAGCTCAAGTT-GATTTCACCACCTGTGAATCCATCCGTATG 687
|||||||||| ||||| |||||| | | | || |||||||| || |||||||| || |||
Sbjct 614 TAATCCTCAATGTTCTGTCAGCT-ACGGTCGACTTCACCACATGCGAATCCATTCGCATG 672
Query 688 TCTAGGCAAGTTGACAAAACTGGTGAACGAACTCTGGCTGTTGTGACGAAAGTC-GACTT 746
||||| ||||||||||||| ||| |||| || || ||||||||||| |||| | ||| |
Sbjct 673 TCTAGAAAAGTTGACAAAACCGGTCAACGGACACTAGCTGTTGTGAC-AAAGGCAGACAT 731
Query 747 AGCTCCAGAAGGTCTCCTT-CACAAAGTAACTGCAAATGATGTGAGTATCGGACTCGGTT 805
||||| ||||||||| || || |||||||||||| ||||||||||||| | || ||||
Sbjct 732 GGCTCCTGAAGGTCTC-TTGCAGAAAGTAACTGCAGATGATGTGAGTATTGTTCTTGGTT 790
Query 806 ATGTCTGTGTCAGGAACCGTATAGGA-AACGAAACCTATGAAGAAGCTAGGTTACAAGAA 864
| || || ||||| ||||| || ||| || || || ||||||||||| ||| | ||||||
Sbjct 791 ACGTGTGCGTCAGAAACCGCATTGGAGAA-GAGACATATGAAGAAGCAAGGATGCAAGAA 849
Query 865 GAGTTGCTTTTCAAGAAGCATCCACTTTCCATGATTGAC-GATGA-GAT-T-GTTGGTAT 920
||||| ||||||| || |||||| | | | | || | ||||| || | || || ||
Sbjct 850 GAGTTACTTTTCAGGACCCATCCAGTG-CTAAGTTTAATTGATGAAGACATAGTGGGAAT 908
Query 921 TCCGGTTTTAGCTCAGAAGTTAACACAAATCCAGGCGA-CAATGATCACCCGATGTTTGC 979
|| || |||||||||||| ||| | ||||| | | || |||| | |||||||||
Sbjct 909 CCCTGTGTTAGCTCAGAAGCTAATGCTTATCCAATCAAGCA-TGATTGCTAGATGTTTGC 967
Query 980 C-AGATATAGTACAG-A-GAATCAATGAAAAAATGGACAA--CAGTACCGCCGAGTTGAA 1034
| | | || ||| || | || |||| | || |||||| | || | ||||||||
Sbjct 968 CTAAA-ATTGTA-AGCAAGA-TCAACCAGAAGTTGGACACTGCTGTTCTA--GAGTTGAA 1022
Query 1035 CAAGCTACCAAAGGTAATGACATCTACAAGGGAAGCTTTGTTCACTTTCCTGCGT-ATCA 1093
||| || |||| ||||||| | ||||| ||||||| ||| | | || || | ||||
Sbjct 1023 CAAACTGCCAATGGTAATGGCTTCTACCGGGGAAGCATTGATGGCATTGATG-GACATCA 1081
Query 1094 TTGGTTCCACCAAAGAATCACTCATAAAAATTTTAGTCCAAGGCGATTTTTCTGAATTTC 1153
||||||| ||||||| || ||| ||| ||| |||||||||| || || ||||||| |
Sbjct 1082 TTGGTTCTGCCAAAGAGTCCCTCTTAAGGATTCTAGTCCAAGGAGACTTCTCTGAATACC 1141
Query 1154 CAGATGATCA-ATGCATGCACTCAACCGCGCGTTTGGCTGATATGTTGGGCCAATTCTCA 1212
|||||||||| | |||||| | || || || |||||||||||||| ||||||||||
Sbjct 1142 CAGATGATCAGAA-CATGCATTGTACTGCTCGCTTGGCTGATATGTTAAGCCAATTCTCT 1200
Query 1213 GACAATCTACAAGCACACCCCCAA-AACGTGACGGATGAGTTCTTGATGGATGAAATCAA 1271
|| | ||| |||||| | || || || ||| | || | |||||||||||||| |||||
Sbjct 1201 GATAGTCTGCAAGCAAAGCCAAAAGAA-GTGGCCGA-G--TTCTTGATGGATGAGATCAA 1256
Query 1272 -AGTACTAGAAGAGTGCAAATCTATCGGATTGCCTAATTTCATCCCAAGATCTGCCTTCA 1330
| | || || || ||||| | | | ||| |||| ||||||||||| || || ||||||
Sbjct 1257 GA-TCCTTGACGAATGCAAGTGTGTTGGACTGCCCAATTTCATCCCCAGGTCAGCCTTCT 1315
Query 1331 TAGCTATCCTTTCACAACGTATTGATGCAATTCAT-ACTAAGCCGGTTGAGTTCATCAGA 1389
| ||||| |||||||||| | |||||| || || || ||||| ||||||||||||| |
Sbjct 1316 TGGCTATACTTTCACAACATGTTGATGGTATACAAGAC-AAGCCAGTTGAGTTCATCA-A 1373
Query 1390 GA-GACATTGGACTACATTGAAGGCGTTCTATTATCTGTT-CTTACCAAATACTCTGAAA 1447
| || || |||||||||||||| ||||| | ||| || || | || ||||| |
Sbjct 1374 CAAGATATGGGACTACATTGAAGATGTTCTCTCATCCGTCACTG-CTAAGCGTTCTGACA 1432
Query 1448 ACTTCCCACAGATTCAATCCTC-ACTCAAAAGAGCTGGTCGGAATCTAATCACCAAGATC 1506
| ||||||||||||||||| || | ||||| |||| ||||| ||||| ||| ||||||||
Sbjct 1433 ATTTCCCACAGATTCAATCTTCCA-TCAAACGAGCCGGTCGTAATCTCATCTCCAAGATC 1491
Query 1507 AAGGAACAATCTGTGAG-CAGAGTAATCGAAATCATCGAGATGGAGAAACTAACCGACTA 1565
|| ||||||||||||| | |||| || || ||| | ||||||||||| || || || ||
Sbjct 1492 AAAGAACAATCTGTGAATC-GAGTGATGGAGATCGTTGAGATGGAGAAGCTGACTGATTA 1550
Query 1566 CACATGTAACCCTGAGTATATGACAGTATAC-AC-CGAGAAGATT-GCTGCGCAAG-GAA 1621
|||||||||||||||||| ||||| || | || | |||||| | ||| |||| ||
Sbjct 1551 CACATGTAACCCTGAGTACATGAC-GTCTTGGACTC-AGAAGACAAG-TGCACAAGAGA- 1606
Query 1622 GCTTCATC-ACTGCTGTACATAGCAATAATTCGAACAT-C-TG-CAACTTAAATGC-ATC 1676
|||||||| | |||||| | | || ||| |||||| | || | |||| || | |
Sbjct 1607 GCTTCATCGA-TGCTGTTG-T-GAAA-AATGAGAACATACCTGACTACTTCTCTGTGA-C 1661
Query 1677 TGGATTCGGAAATGTTCAGATTTCGCATCTAAGGAAGTATGATGCGCAATTGCTTAGGCA 1736
|||||| |||||||| |||||||||||||| | |||||| | || || || || | |
Sbjct 1662 TGGATTTGGAAATGTGAAGATTTCGCATCTACGAAAGTATCACGCTCATTTACTGATTCC 1721
Query 1737 AGCGTTT-GACATGAAGGTTAGAATCACATCTTACTGGATA-ATCGTCGTACGAAGGATT 1794
|| ||| ||||||||| | || |||||||||||||||| | |||||| | || || ||
Sbjct 1722 GGC-TTTCGACATGAAGATGAGGATCACATCTTACTGGA-AGATCGTCCTGCGGAGAATC 1779
Query 1795 GTGGATAGCCTTGCTCTGTATCTTCAATTCTCTGTGAAGAATCTTGTGAACAGC-CAATT 1853
|| || | |||||| ||||||||||| | ||||||||| ||| || |||| | | |||
Sbjct 1780 GTAGACAACCTTGCACTGTATCTTCAGCTATCTGTGAAGTCTCTCGTCAACA-CTCGATT 1838
Query 1854 ACAGAAGGAGATCGGGGAGGAATTGGT-GAATTCATGTGGCGGAGGAGAAGTTGAGAAGA 1912
||||||||||| | || |||| |||| || | || | | || |||| |||||| ||||
Sbjct 1839 TCAGAAGGAGATTGTGGCGGAAATGGTTGA-TCCAAGAGATGGTGGAGGAGTTGAAAAGA 1897
Query 1913 TGCTAGAGGAGTCTCCGTCGGTGGCGAGTAAGAGGGAGAAGCTGAAGAACAGTATCAAGC 1972
|| | ||||||||||||| ||||||||| || ||||||||||| |||| ||||||||||
Sbjct 1898 TGTTGGAGGAGTCTCCGTTGGTGGCGAGCAAAAGGGAGAAGCTTCAGAATAGTATCAAGC 1957
Query 1973 TTCT-GAAGGAGTGTAAGGATGCTGTGGCTGCCATTGTTGATCA 2015
| || |||||||| ||||||||||||||| ||||||||||||||
Sbjct 1958 T-CTTGAAGGAGTCTAAGGATGCTGTGGCCGCCATTGTTGATCA 2000
> AT1G60510.1 | Symbols: DRP4D | pseudogene, putative interferon-induced
GTP-binding protein mx, blastp match of 42% identity
and 8.3e-35 P-value to GP|1399454|gb|AAC60215.1||U47946 RBTMx3
{Oncorhynchus mykiss} | chr1:22294722-22297139 FORWARD
LENGTH=2418
Length=2418
Score = 675 bits (365), Expect = 0.0
Identities = 1185/1567 (76%), Gaps = 112/1567 (7%)
Strand=Plus/Plus
Query 444 TGCAGGATCTGGAAAAGGGGTCTCAGACACTCCCTTGACCCTCCATGTGATGAAAGCTGG 503
|||||||||||| ||||||||||||||| |||| |||||||||||||| | ||| |||||
Sbjct 919 TGCAGGATCTGGCAAAGGGGTCTCAGACGCTCCATTGACCCTCCATGTTAAGAAGGCTGG 978
Query 504 CGTTCCAAATCTTACCATGATTGACCTCCCCGGGATTGTC-CGGATTG-CTGTTG-ATGG 560
|| ||| ||||||||||| | || || ||||| | | | | || | | | || ||||
Sbjct 979 GGTCCCATATCTTACCATGGTCGATCTTCCCGGTA-TAACTC-GA-GGCCAG-TGAATGG 1034
Query 561 CCAGCCGGAAAATATATATGAGCAAATTTCTGCTATGATTATGAAGTACATTGAGCCTCA 620
|| ||||| ||||| || || || ||||||| ||||| ||||||||||| ||||| ||
Sbjct 1035 ACAACCGGAGAATATTTACGAACAGATTTCTGGGATGATCATGAAGTACATCGAGCCACA 1094
Query 621 GGAAACAATAATCCTCAACGTTCTATCAGCTCA-AGTTGATTTCACCACCTGTGAATCCA 679
||| ||||||||||||| ||||| |||||| | ||| || |||||||||||||||||||
Sbjct 1095 AGAATCAATAATCCTCAATGTTCTGTCAGCT-ACAGTCGACTTCACCACCTGTGAATCCA 1153
Query 680 TCCGTATGTCTAGGCAAGTTGACAAAACTGGTGAACGAACTCTGGCTGTTGTGACGAAAG 739
||||||||| | || | || | | |||||| ||||| || || |
Sbjct 1154 TCCGTATGT---G--AA-----C------GG--A-C----TCTGGCCGTTGTCACCAAGG 1190
Query 740 TC-GACTTAGCTCCAGAAGGTCTCCTTCACAAAGTAACTGCAAATGATGTGAGTATCGGA 798
| ||| | ||||| ||||||||||| || ||||||||||| ||||||||||||| ||
Sbjct 1191 -CAGACATGGCTCCCGAAGGTCTCCTACAGAAAGTAACTGCGGATGATGTGAGTATTGGT 1249
Query 799 CTCGGTTATGTCTGTGTCAGGAACCGTATAGGA-AACGAAACCTATGAAGAAGCTAGGTT 857
|| ||||| ||||||||||| ||||| || ||| || || | |||||| ||||||| |
Sbjct 1250 CTAGGTTACGTCTGTGTCAGAAACCGCATTGGAGAA-GAG-CGTATGAACAAGCTAGAAT 1307
Query 858 ACAAGAAGAGTTGCTTTTCAAGAAGCATCC-A--CTTTCCATGATTGACGATGAGATTGT 914
|||||||||||||| |||| || || || | || | ||||||| || || || ||
Sbjct 1308 GCAAGAAGAGTTGCTCTTCAGGACTCACCCGATGCTGAGCTTGATTGATGAAGACATCGT 1367
Query 915 TGGTATTCCGGTTTTAGCTCAGAAGTTAACACAAATCCAGGCGACAATGATCACCCGATG 974
|| || || ||| ||||||||||| ||| | ||||| || || ||||| |||| ||
Sbjct 1368 GGGAATCCCTGTTATAGCTCAGAAGCTAATGCTTATCCAAGCAACGATGATTTCCCGCTG 1427
Query 975 TTTGCCAGATATAGTACAG-A-GAATCAATGAAAAAATGGACAACAGTACCG-CC-G-AG 1029
|||||| || || || | | | || ||||| | || ||||| ||| | | | || | ||
Sbjct 1428 TTTGCCTGAAATCGTTC-GCAAGA-TCAATCACAAGATGGA-AACTG--CTGTCCTGGAG 1482
Query 1030 TTGAACAAGCTACCAAAGGTAATGACATCTACAAGG-GAAGCTTTGTTCACTTTCCTGCG 1088
|||||||||||||| | ||| ||| | ||||| || ||||| ||| | | || || |
Sbjct 1483 TTGAACAAGCTACCGATGGTTATGGCTTCTACC-GGAGAAGCATTGATGGCATTGATG-G 1540
Query 1089 T-ATCATTGGTTCCACCAAAGAATCACTCATAAAAATT-TTAGTCCAAGGCGATTTTTCT 1146
||||||||||| |||| || || ||| | | ||| || |||||||| || || |||
Sbjct 1541 ACATCATTGGTTCTGCCAAGGAGTCCCTCTTCAGAATCCTT-GTCCAAGGAGACTTCTCT 1599
Query 1147 GAATTTCCAGATGATCA-ATGCATGCACTCAACCGCGCGTTTGGCTGATATGTTGGGCCA 1205
||||| || ||||| || | |||||||| || || ||||||||||| ||||| ||||
Sbjct 1600 GAATTCCCGGATGACCAGAA-CATGCACTGTACTGCTCGTTTGGCTGACATGTTAAGCCA 1658
Query 1206 ATTCTCAGACAATCTACAAGCACACCCCCAA--AACGTGACGGATGAGTTCTTGATGGAT 1263
|||||| || ||||| |||| | | || || || ||||| || | ||||||||| ||
Sbjct 1659 ATTCTCCGATAATCTGCAAG-AGAAGCCAAAGGAA-GTGACCGA-G--TTCTTGATGAAT 1713
Query 1264 GAAATCAA-AGTACTAGAAGAGTGCAAATCTATCGGATTGCCTAATTTCATCCCAAGATC 1322
|| ||||| | | || || || ||||| | | | ||| |||| ||||||||||| || ||
Sbjct 1714 GAGATCAAGA-TCCTTGACGAATGCAAGTGTGTTGGACTGCCCAATTTCATCCCCAGGTC 1772
Query 1323 TGCCTTCATAGCTATCCTTTCACAAC--GTATTGATGCAATTCATA-CTAAGCCGGTTGA 1379
|||||| | ||||| || ||||||| | | ||||| || ||| | ||||| || ||
Sbjct 1773 AGCCTTCTTGGCTATACTATCACAACACGAA--GATGCCATACATGTC-AAGCCCGTGGA 1829
Query 1380 GTTCATCAGAGA-GACATTGGACTACATTGAAGGCGTTCTATTATCTGTTC-TTACCAAA 1437
|||||||| ||| || || |||||||||||||| ||||| | ||| || | || ||||
Sbjct 1830 GTTCATCA-AGAAGATATGGGACTACATTGAAGTTGTTCTCTCATCCGT-CATTGCCAAG 1887
Query 1438 TACTCTGAAAACTTCCCACAGATTCAATCCT-C-ACTCAAAAGAGCTGGTCGGAATCTAA 1495
|| |||||||||||||||||||| ||||| | | | ||||| | |||||||| |||||||
Sbjct 1888 TATTCTGAAAACTTCCCACAGATCCAATC-TGCCA-TCAAACGTGCTGGTCGAAATCTAA 1945
Query 1496 TCACCAAGATCAAGGAACAATCTGTG-AGCAGAGTAATCGAAATCATCGAGATGGAGAAA 1554
||||||||||||||||||| |||||| ||| |||| | || || | || ||||||||
Sbjct 1946 TCACCAAGATCAAGGAACACTCTGTGGAGC-GAGTGTTGGAGATTGTTGAAATGGAGAAG 2004
Query 1555 CTAACCGACTACACATGTAACCCTGAGTATATGACAGTATAC-AC-CGAGAAGATTGCTG 1612
|| || || |||||||||||||||||||| ||||| || | || | ||| || |||||
Sbjct 2005 CTGACTGATTACACATGTAACCCTGAGTACATGAC-GTCTTGGACTC-AGATGACTGCTG 2062
Query 1613 CGCAAGGAAGCTTCATC-A--CTGC-T-GTAC-ATAGCAATAATTC-GAACATCTGCAAC 1665
||| || |||||| | ||| | || | || | || || | || || || | |
Sbjct 2063 AACAACAAAACTTCATTTATGCTGTGTTGTCCGATGGGAAAAAGCCTGAGCA-CTTCT-C 2120
Query 1666 -TTAAATGCATCTGGATTCGGAAATGTTCAGATTTCGCATCTAAGGAAGTATGATGCGCA 1724
|| | || || ||| | |||| ||| |||| || || ||| |||||||| |||| ||
Sbjct 2121 GTTGACTGGATTTGG-T--GGAATTGTGAAGATCTCTCACCTACGGAAGTATCATGCTCA 2177
Query 1725 AT-TGCTT-AGGCAAGCGTTTGACATGAAGGTTAGAATCA-CATCTTACTGGATAATCGT 1781
| | || || ||||| || || |||||| | || || | |||||||||||| || ||
Sbjct 2178 -TCTCCTGCAG-CAAGCCTTCGATATGAAGATGAGGAT-AGCATCTTACTGGACGATAGT 2234
Query 1782 CGTACGAAGGATTGTGGATAGCCTTGCTCTGTATCTTCAATTCTCTGTGAAGAATCTTGT 1841
| |||||||||||||||| || ||||||||||||||||| | || ||||||||||| ||
Sbjct 2235 CTTACGAAGGATTGTGGACAGTCTTGCTCTGTATCTTCAGCTGTCAGTGAAGAATCTCGT 2294
Query 1842 GAAC-AGCCAATTACAGAAGGAGATCGGGGAGGA-ATTGGTGAATTCATGTGGC-GGAGG 1898
||| | | || ||||||||||| | || ||| || |||| || || | | | || ||
Sbjct 2295 GAATTATT-AGTTTCAGAAGGAGATTGTGGCGGAGAT-GGTGGATCCAAGAG-CTGGCGG 2351
Query 1899 AGAAGTTGAGAAGATGCTAGAGGAGTCTCCGTCGGTGGCGAGTAAGAGGGAGAAGCTGAA 1958
|| || ||| ||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 2352 AGGTCTTCAGAGGATGCTAGAGGAGTCGCCGTCGGTGGCGAGCAAGAGAGAGAAGCTGAA 2411
Query 1959 GAACAGT 1965
|||||||
Sbjct 2412 GAACAGT 2418
Score = 272 bits (147), Expect = 9e-72
Identities = 232/273 (85%), Gaps = 6/273 (2%)
Strand=Plus/Plus
Query 94 ATCAAAGCACCAATTATATCTTCTTATGATGACCGAATTAGGCCGTTGCTTGACACTGTT 153
||| ||||||| ||||||||||| ||| | || | |||||||||||||||||||| |||
Sbjct 97 ATCGAAGCACCGATTATATCTTCATATAACGATAGGATTAGGCCGTTGCTTGACACGGTT 156
Query 154 GACAAGT-TGAGGAACCTGAATGTGATGAGTGAAGGGATCCAGCTTCCCACCATTGTTGT 212
||| || | |||||||| ||||||||||| ||||| || ||||||||||||||||| ||
Sbjct 157 GAC-CGTCTAAGGAACCTCAATGTGATGAGAGAAGGCATTCAGCTTCCCACCATTGTCGT 215
Query 213 GGTTGGAGACCAGTCCTATGGGAAGTCTAGCGTTCTCGAGTCGCTGGCCA-GAATCAGTT 271
||||||||||||||||| |||||||| || || ||||| ||| ||| || ||||||||
Sbjct 216 GGTTGGAGACCAGTCCTCGGGGAAGTCAAGTGTCCTCGACTCGTTGG-CAGGAATCAGTC 274
Query 272 TGCCTCGCGGGGAAGGAATCTGCACTAGGGTTCCTCTTGTGATGAGGCTTCAGCAGA-GC 330
| ||||| || |||||||||||||||||||||||||||| ||| | ||||||| || ||
Sbjct 275 TACCTCGTGGCCAAGGAATCTGCACTAGGGTTCCTCTTGTCATGCGACTTCAGC-GAAGC 333
Query 331 TCTAGCTTTGAACCTGAGATCTGGCTTGAGTAC 363
|||||| || ||||||||| ||||||||||||
Sbjct 334 TCTAGCCCTGTACCTGAGATATGGCTTGAGTAC 366
> AT1G60505.1 | Symbols: | other RNA | chr1:22294677-22297220
REVERSE LENGTH=1928
Length=1928
Score = 547 bits (296), Expect = 1e-154
Identities = 898/1181 (76%), Gaps = 72/1181 (6%)
Strand=Plus/Minus
Query 896 TGATTGACGATGAGATTGTTGGTATTCCGGTTTTAGCTCAGAAGTTAACACAAATCCAGG 955
||||||| || || || || || || || ||| ||||||||||| ||| | ||||| |
Sbjct 1151 TGATTGATGAAGACATCGTGGGAATCCCTGTTATAGCTCAGAAGCTAATGCTTATCCAAG 1092
Query 956 CGACAATGATCACCCGATGTTTGCCAGATATAG-T-ACAGAGAATCAATGAAAAAATGGA 1013
| || ||||| |||| |||||||| || || | | || || |||||| | || |||||
Sbjct 1091 CAACGATGATTTCCCGCTGTTTGCCTGAAATCGTTCGCA-AG-ATCAATCACAAGATGGA 1034
Query 1014 CAACAGTACCG-CC--GAGTTGAACAAGCTACCAAAGGTAATGACATCTACAAGG-GAAG 1069
||| | | | || ||||||||||||||||| | ||| ||| | ||||| || ||||
Sbjct 1033 -AAC--TGCTGTCCTGGAGTTGAACAAGCTACCGATGGTTATGGCTTCTAC-CGGAGAAG 978
Query 1070 CTTTGTTCACTTTCCTGCG-TATCATTGGTTCCACCAAAGAATCACTCATAAAAAT-TTT 1127
| ||| | | || || | ||||||||||| |||| || || ||| | | ||| ||
Sbjct 977 CATTGATGGCATTGATG-GACATCATTGGTTCTGCCAAGGAGTCCCTCTTCAGAATCCTT 919
Query 1128 AGTCCAAGGCGATTTTTCTGAATTTCCAGATGATCA-ATGCATGCACTCAACCGCGCGTT 1186
|||||||| || || |||||||| || ||||| || | |||||||| || || ||||
Sbjct 918 -GTCCAAGGAGACTTCTCTGAATTCCCGGATGACCAGA-ACATGCACTGTACTGCTCGTT 861
Query 1187 TGGCTGATATGTTGGGCCAATTCTCAGACAATCTACAAGCACACCCCCAAAACGTGACG- 1245
||||||| ||||| |||||||||| || ||||| |||| | | || ||| | || |
Sbjct 860 TGGCTGACATGTTAAGCCAATTCTCCGATAATCTGCAAG-AGA-AGCC-AAA-G-GAAGT 806
Query 1246 GA-TGAGTTCTTGATGGATGAAATCAAAG-TACTAGAAGAGTGCAAATCTATCGGATTGC 1303
|| |||||||||||| |||| ||| ||| | || || || ||||| | | | ||| |||
Sbjct 805 GACCGAGTTCTTGATGAATGAGATC-AAGATCCTTGACGAATGCAAGTGTGTTGGACTGC 747
Query 1304 CTAATTTCATCCCAAGATCTGCCTTCATAGCTATCCTTTCAC-A-ACGTATTGATGCAAT 1361
| ||||||||||| || || |||||| | ||||| || |||| | ||| | ||||| ||
Sbjct 746 CCAATTTCATCCCCAGGTCAGCCTTCTTGGCTATACTATCACAACACG-A-AGATGCCAT 689
Query 1362 TCATACT-AAGCCGGTTGAGTTCATC-AGAGAGACATTGGACTACATTGAAGGCGTTCTA 1419
||| | ||||| || ||||||||| ||| ||| || |||||||||||||| |||||
Sbjct 688 ACAT-GTCAAGCCCGTGGAGTTCATCAAGA-AGATATGGGACTACATTGAAGTTGTTCTC 631
Query 1420 TTATCTGTTC-TTACCAAATACTCTGAAAACTTCCCACAGATTCAATCCT--CACTCAAA 1476
| ||| | || || |||| || |||||||||||||||||||| |||| || || |||||
Sbjct 630 TCATCCG-TCATTGCCAAGTATTCTGAAAACTTCCCACAGATCCAAT-CTGCCA-TCAAA 574
Query 1477 AGAGCTGGTCGGAATCTAATCACCAAGATCAAGGAACAATCTGT-GAGCAGAGTAATCGA 1535
| |||||||| |||||||||||||||||||||||||| ||||| |||| |||| | ||
Sbjct 573 CGTGCTGGTCGAAATCTAATCACCAAGATCAAGGAACACTCTGTGGAGC-GAGTGTTGGA 515
Query 1536 AATCATCGAGATGGAGAAACTAACCGACTACACATGTAACCCTGAGTATATGACAGT-AT 1594
|| | || |||||||| || || || |||||||||||||||||||| ||||| || |
Sbjct 514 GATTGTTGAAATGGAGAAGCTGACTGATTACACATGTAACCCTGAGTACATGAC-GTCTT 456
Query 1595 ACAC-CGAGAAGATTGCTGCGCAAGGAAGCTTCA-TCA--C--TGCTGTAC-ATAGCAAT 1647
|| | ||| || ||||| ||| || ||||| | | | || ||| | || | ||
Sbjct 455 GGACTC-AGATGACTGCTGAACAACAAAACTTCATTTATGCTGTGTTGTCCGATGGGAAA 397
Query 1648 AATTC-GAACATCTGCAAC-TTAAATGCATCTGGATTCGGAAATGTTCAGATTTCGCATC 1705
|| | || || || | | || | || || ||| | |||| ||| |||| || || |
Sbjct 396 AAGCCTGAGCA-CTTC-TCGTTGACTGGATTTGG--T-GGAATTGTGAAGATCTCTCACC 342
Query 1706 TAAGGAAGTATGATGCGCAAT-TGCT-TAGGCAAGCGTTTGACATGAAGGTTAGAATCA- 1762
|| |||||||| |||| | || | || | |||||| || || |||||| | || || |
Sbjct 341 TACGGAAGTATCATGCTC-ATCTCCTGCA-GCAAGCCTTCGATATGAAGATGAGGAT-AG 285
Query 1763 CATCTTACTGGATAATCGTCGTACGAAGGATTGTGGATAGCCTTGCTCTGTATCTTCAAT 1822
|||||||||||| || ||| |||||||||||||||| || |||||||||||||||||
Sbjct 284 CATCTTACTGGACGATAGTCTTACGAAGGATTGTGGACAGTCTTGCTCTGTATCTTCAGC 225
Query 1823 TCTCTGTGAAGAATCTTGTGAA-CAGCCAATTACAGAAGGAGATCGGGGAGGA-ATTGGT 1880
| || ||||||||||| ||||| | | || ||||||||||| | || ||| | ||||
Sbjct 224 TGTCAGTGAAGAATCTCGTGAATTA-TTAGTTTCAGAAGGAGATTGTGGCGGAGA-TGGT 167
Query 1881 GAATTCATGTGGC-GGAGGAGAAGTTGAGAAGATGCTAGAGGAGTCTCCGTCGGTGGCGA 1939
| || || | || || |||| || ||| ||||||||||||||| |||||||||||||
Sbjct 166 GGATCCAAG-AGCTGGCGGAGGTCTTCAGAGGATGCTAGAGGAGTCGCCGTCGGTGGCGA 108
Query 1940 GTAAGAGGGAGAAGCTGAAGAACAGTATCAAGCTTCTGAAGGAGTGTAAGGATGCTGTGG 1999
| ||||| |||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 107 GCAAGAGAGAGAAGCTGAAGAACAGTATCAAGCTTCCGAAGGAGTCCAAGGATGCAGTGG 48
Query 2000 CTGCCATTGTTGATCAGAACTCTGGGTTTGGAGATCGTTGA 2040
| |||||||| ||||||| ||||||| ||||||||||||
Sbjct 47 CGGCCATTGTCGATCAGAGTTCTGGGTACGGAGATCGTTGA 7
Score = 407 bits (220), Expect = 2e-112
Identities = 482/603 (80%), Gaps = 39/603 (6%)
Strand=Plus/Minus
Query 94 ATCAAAGCACCAATTATATCTTCTTATGATGACCGAATTAGGCCGTTGCTTGACACTGTT 153
||| ||||||| ||||||||||| ||| | || | |||||||||||||||||||| |||
Sbjct 1787 ATCGAAGCACCGATTATATCTTCATATAACGATAGGATTAGGCCGTTGCTTGACACGGTT 1728
Query 154 GACAAGT-TGAGGAACCTGAATGTGATGAGTGAAGGGATCCAGCTTCCCACCATTGTTGT 212
||| || | |||||||| ||||||||||| ||||| || ||||||||||||||||| ||
Sbjct 1727 GAC-CGTCTAAGGAACCTCAATGTGATGAGAGAAGGCATTCAGCTTCCCACCATTGTCGT 1669
Query 213 GGTTGGAGACCAGTCCTATGGGAAGTCTAGCGTTCTCGAGTCGCTGGCCA-GAATCAGTT 271
||||||||||||||||| |||||||| || || ||||| ||| ||| || ||||||||
Sbjct 1668 GGTTGGAGACCAGTCCTCGGGGAAGTCAAGTGTCCTCGACTCGTTGG-CAGGAATCAGTC 1610
Query 272 TGCCTCGCGGGGAAGGAATCTGCACTAGGGTTCCTCTTGTGATGAGGCTTCAGCAGA-GC 330
| ||||| || |||||||||||||||||||||||||||| ||| | ||||||| || ||
Sbjct 1609 TACCTCGTGGCCAAGGAATCTGCACTAGGGTTCCTCTTGTCATGCGACTTCAGC-GAAGC 1551
Query 331 TCTAGCTTTGAACCTGAGATCTGGCTTGAGTACGAACTGTACGGTAAGAATAAAGTTGAT 390
|||||| || ||||||||| |||||||||||| | || || |||| | |||
Sbjct 1550 TCTAGCCCTGTACCTGAGATATGGCTTGAGTAC-AG-TG-AC---AAGATT---GTTCCC 1500
Query 391 AAAACTGACGAGGAGCACATTGCTGAAGCTAT-TCGCAAAGCAACCGATGCTATTGCAGG 449
| | || ||||||||||| ||||||||||| | | || | | || |||||
Sbjct 1499 A---CGGATGAGGAGCACATCGCTGAAGCTATCT-GT---GCTAT--A--CT---GCAGG 1454
Query 450 ATCTGGAAAAGGGGTCTCAGACACTCCCTTGACCCTCCATGTGATGAAAGCTGGCGTTCC 509
|||||| ||||||||||||||| |||| |||||||||||||| | ||| ||||| || ||
Sbjct 1453 ATCTGGCAAAGGGGTCTCAGACGCTCCATTGACCCTCCATGTTAAGAAGGCTGGGGTCCC 1394
Query 510 AAATCTTACCATGATTGACCTCCCCGGGATTG-TCCGGATTGCT-GTTGA-TGGCCAGCC 566
| ||||||||||| | || || ||||| || || | | || || || ||| || ||
Sbjct 1393 ATATCTTACCATGGTCGATCTTCCCGGTATAACTC-G-AG-GCCAGT-GAATGGACAACC 1338
Query 567 GGAAAATATATATGAGCAAATTTCTGCTATGATTATGAAGTACATTGAGCCTCAGGAAAC 626
||| ||||| || || || ||||||| ||||| ||||||||||| ||||| || ||| |
Sbjct 1337 GGAGAATATTTACGAACAGATTTCTGGGATGATCATGAAGTACATCGAGCCACAAGAATC 1278
Query 627 AATAATCCTCAACGTTCTATCAGCT-CAAGTTGATTTCACCACCTGTGAATCCATCCGTA 685
|||||||||||| ||||| |||||| || || || |||||||||||||||||||||||||
Sbjct 1277 AATAATCCTCAATGTTCTGTCAGCTACA-GTCGACTTCACCACCTGTGAATCCATCCGTA 1219
Query 686 TGT 688
|||
Sbjct 1218 TGT 1216
> AT1G60545.1 | Symbols: | other RNA | chr1:22302492-22305156
FORWARD LENGTH=2305
Length=2305
Score = 283 bits (153), Expect = 4e-75
Identities = 234/272 (86%), Gaps = 10/272 (4%)
Strand=Plus/Minus
Query 98 AAGCACCAATTATATCTTCTTATGATGACCGA-ATTAGGCCGTTGCTTGACACTGTTGAC 156
||||||||||| |||| ||||| |||||| | || |||||||||||||||||||| |||
Sbjct 2037 AAGCACCAATTGTATCATCTTACAATGACC-ACATCAGGCCGTTGCTTGACACTGTGGAC 1979
Query 157 AAGTTGAGGAACCTGAATGTGATG-AGTGAAGGGATCCAGCTTCCCACCATTGTTGTGGT 215
||| | |||||| ||||||||||| | |||||||| |||||||| ||||||||||||||
Sbjct 1978 AAGCTCAGGAACTTGAATGTGATGCA-AGAAGGGATTCAGCTTCCTACCATTGTTGTGGT 1920
Query 216 TGGAGACCAGTCCTATGGGAAGTCTAGCGTTCTCGAGTCGCTGGCCAG-AATCAGTTTGC 274
|||||||||||||| |||||||| || || ||||||||| |||| || |||||||||||
Sbjct 1919 TGGAGACCAGTCCTCGGGGAAGTCGAGTGTCCTCGAGTCGTTGGC-AGGAATCAGTTTGC 1861
Query 275 CTCGCGGGGAAGGAATCTGCACTAGGGTTCCTCTTGTGATGAGGCTTCAGCAGA-GCTCT 333
| || ||| |||||||||||||||| ||||||||||| |||||||| ||| ||| | ||
Sbjct 1860 CACGTGGGCAAGGAATCTGCACTAGAGTTCCTCTTGTCATGAGGCTCCAG-AGAAG-TCG 1803
Query 334 A-GCTTTGAACCTGAGATCTGGCTTGAGTACG 364
| || |||||||||||||||||| |||||||
Sbjct 1802 AAGCCCTGAACCTGAGATCTGGCTGGAGTACG 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101103897630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5