BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338326
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60500.1 | Symbols: DRP4C | Dynamin related protein 4C | chr... 782 0.0
AT1G60505.1 | Symbols: | other RNA | chr1:22294677-22297220 RE... 484 6e-136
AT1G60510.1 | Symbols: DRP4D | pseudogene, putative interferon-... 344 1e-93
AT1G60520.1 | Symbols: | pseudogene, putative interferon-induc... 195 1e-48
> AT1G60500.1 | Symbols: DRP4C | Dynamin related protein 4C | chr1:22291582-22293964
FORWARD LENGTH=2152
Length=2152
Score = 782 bits (423), Expect = 0.0
Identities = 758/920 (82%), Gaps = 22/920 (2%)
Strand=Plus/Plus
Query 87 TGAAGCACCAATTGTATCTTCTTACAATGACCGGATCAGGCCGTTACTTGATACTGTCGA 146
||||||||| ||| ||||||| || || || ||||| |||||||| ||||| ||||| ||
Sbjct 93 TGAAGCACCGATTATATCTTCATATAACGATCGGATAAGGCCGTTGCTTGACACTGTGGA 152
Query 147 TAGGCTGAGAAACTTGAATGTGATGAAAGAAGGGATCCAGCTTCCCACCATTGTCGTGGT 206
|| || || ||| | ||||| |||| |||||||||||| ||||||||||||||||||||
Sbjct 153 CAGACTTAGGAACCTCAATGTCATGAGAGAAGGGATCCATCTTCCCACCATTGTCGTGGT 212
Query 207 TGGAGACCAGTCTTCGGGGAAGTCAAGTGTTCTTGAGTCCTTGGCCGGAATCAGTTTACC 266
|||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 213 TGGAGACCAGTCCTCAGGGAAGTCAAGTGTTCTTGAATCCTTGGCAGGAATCAGTTTACC 272
Query 267 TCGTGGGCAAGGAATATGCACTAGGGTTCCTCTTGTGATGAGACTCCAGAGAAG-TCTTA 325
|||||| |||||||| |||||||||||||||||||| ||||| || ||| |||| ||| |
Sbjct 273 TCGTGGCCAAGGAATCTGCACTAGGGTTCCTCTTGTCATGAGGCTTCAGCGAAGCTCT-A 331
Query 326 GTCCTGAACCTGAGATCTGGCTTGAGT-TCAATGACAAAAGAG-TTGATACTGACGAGGA 383
| |||||||||||||| |||||||||| | || |||||| | | || ||| ||||||||
Sbjct 332 GCCCTGAACCTGAGATTTGGCTTGAGTAT-AACGACAAA-GTGGTTCCTACGGACGAGGA 389
Query 384 ACATATAGCTGAAGCTATTAG--CATCACAACTGAGGCAATTGCTGGATCTGGTAA-GGG 440
||| || |||||||||||| | | | |||| || | ||||||||||||||||| |||
Sbjct 390 ACACATCGCTGAAGCTATTCGTGC-TG-CAACAGATGTGATTGCTGGATCTGGTAAAGGG 447
Query 441 CGTCTCAGATACTCCCCTGACCCTACATGTTAAGAAGAATGGTGTTCCTGAT-TTGACAA 499
||||||||| |||| ||||||| ||||| |||||| ||||||||| || || || |
Sbjct 448 -GTCTCAGATGCTCCATTGACCCTCCATGTGAAGAAGGCTGGTGTTCCAGACCTT-ACGA 505
Query 500 TGGTTGATCTCCCCGGTATAACCCGTGTTCCCGTGAATGGACAGCCAGAAAACATCTATG 559
|||| ||||| ||||||||||| || ||||| |||||||||||||| ||||| || ||||
Sbjct 506 TGGTCGATCTTCCCGGTATAACTCGAGTTCCAGTGAATGGACAGCCGGAAAATATTTATG 565
Query 560 AACAAATCTCTGGGATGATAATGAAGTACATCGAGCCACAAGAATCCATCATCCTCAATG 619
| || |||||||||||||| ||| ||||||| ||||| |||||||| || ||||||||||
Sbjct 566 AGCAGATCTCTGGGATGATTATGGAGTACATTGAGCCTCAAGAATCAATAATCCTCAATG 625
Query 620 TCCTGTCAGCTACAGTCGACTTCACCACCTGTGAATCCATCCGTATGTCTCGACAAGTTG 679
| ||||||||||| |||||||||||||| || |||||||| || |||||| || ||||||
Sbjct 626 TTCTGTCAGCTACGGTCGACTTCACCACATGCGAATCCATTCGCATGTCTAGAAAAGTTG 685
Query 680 ACAAAACAGGGGAACGGACTCTGGCTGTCGTGACAAAAGCTGACATGGCTCCTGAAGGTC 739
||||||| || ||||||| || ||||| |||||||| || |||||||||||||||||||
Sbjct 686 ACAAAACCGGTCAACGGACACTAGCTGTTGTGACAAAGGCAGACATGGCTCCTGAAGGTC 745
Query 740 TCCTAG-AGAAAGTAA-TGGCAGACGACGTGAGTATTGGACTAGGTTACGTCTGTGTAAG 797
|| | | ||||||||| || |||| || |||||||||| || |||||||| || || ||
Sbjct 746 TCTT-GCAGAAAGTAACTG-CAGATGATGTGAGTATTGTTCTTGGTTACGTGTGCGTCAG 803
Query 798 GAACCGTGTAGGTGATGAGACATATCAAGAAGCTAGGATGCATGAAGAATTACTTTTCAA 857
||||| | || || ||||||||| ||||||| |||||||| ||||| ||||||||||
Sbjct 804 AAACCGCATTGGAGAAGAGACATATGAAGAAGCAAGGATGCAAGAAGAGTTACTTTTCAG 863
Query 858 GACTCATCCATTGCTTTCTATGATTGACCATGACATTGTAGGTATCCCGGTTTTAGCTAA 917
||| |||||| |||| | | ||||| | ||||| || || ||||| || |||||| |
Sbjct 864 GACCCATCCAGTGCTAAGTTTAATTGATGAAGACATAGTGGGAATCCCTGTGTTAGCTCA 923
Query 918 GAAATTGATGCAGATCCAGGGAA-CAATGATTGCTCGTTGCTTGCCTGATATCGTTCAG- 975
||| | |||| ||||| || || |||||||| | || |||||| | || || ||
Sbjct 924 GAAGCTAATGCTTATCCAATCAAGCA-TGATTGCTAGATGTTTGCCTAAAATTGTA-AGC 981
Query 976 AAGATCAAAGAGAAGATGGA 995
|||||||| ||||| ||||
Sbjct 982 AAGATCAACCAGAAGTTGGA 1001
> AT1G60505.1 | Symbols: | other RNA | chr1:22294677-22297220
REVERSE LENGTH=1928
Length=1928
Score = 484 bits (262), Expect = 6e-136
Identities = 481/585 (82%), Gaps = 21/585 (4%)
Strand=Plus/Minus
Query 88 GAAGCACCAATTGTATCTTCTTACAATGACCGGATCAGGCCGTTACTTGATACTGTCGAT 147
|||||||| ||| ||||||| || || || |||| |||||||| ||||| || || ||
Sbjct 1784 GAAGCACCGATTATATCTTCATATAACGATAGGATTAGGCCGTTGCTTGACACGGTTGAC 1725
Query 148 AGGCTGAGAAACTTGAATGTGATGAAAGAAGGGATCCAGCTTCCCACCATTGTCGTGGTT 207
| || || ||| | |||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 1724 CGTCTAAGGAACCTCAATGTGATGAGAGAAGGCATTCAGCTTCCCACCATTGTCGTGGTT 1665
Query 208 GGAGACCAGTCTTCGGGGAAGTCAAGTGTTCTTGAGTCCTTGGCCGGAATCAGTTTACCT 267
||||||||||| ||||||||||||||||| || || || ||||| ||||||||| |||||
Sbjct 1664 GGAGACCAGTCCTCGGGGAAGTCAAGTGTCCTCGACTCGTTGGCAGGAATCAGTCTACCT 1605
Query 268 CGTGGGCAAGGAATATGCACTAGGGTTCCTCTTGTGATGAGACTCCAGAGAAG-TCTTAG 326
||||| |||||||| |||||||||||||||||||| ||| |||| ||| |||| ||| ||
Sbjct 1604 CGTGGCCAAGGAATCTGCACTAGGGTTCCTCTTGTCATGCGACTTCAGCGAAGCTCT-AG 1546
Query 327 TCCTGAACCTGAGATCTGGCTTGAGTTCAATGACAAAAGAGTTGATACTGACGAGGAACA 386
|||| ||||||||| |||||||||| || |||||| | ||| || || ||||| ||
Sbjct 1545 CCCTGTACCTGAGATATGGCTTGAGTACAGTGACAAGATTGTTCCCACGGATGAGGAGCA 1486
Query 387 TATAGCTGAAGCTAT-TAGCATCACAACTGAGGCAATTGCTGGATCTGGTAA-GGGCGTC 444
|| ||||||||||| | | | | | | | | | || |||||||| || ||| |||
Sbjct 1485 CATCGCTGAAGCTATCT-G--TG-CTA-T-A--C--T-GCAGGATCTGGCAAAGGG-GTC 1438
Query 445 TCAGATACTCCCCTGACCCTACATGTTAAGAAGAATGGTGTTCC-TGAT-TTGACAATGG 502
||||| |||| ||||||| |||||||||||| ||| || || | || || || ||||
Sbjct 1437 TCAGACGCTCCATTGACCCTCCATGTTAAGAAGGCTGGGGTCCCAT-ATCTT-ACCATGG 1380
Query 503 TTGATCTCCCCGGTATAACCCGTGTTCCCGTGAATGGACAGCCAGAAAACATCTATGAAC 562
| ||||| ||||||||||| || | || ||||||||||| || || || || || ||||
Sbjct 1379 TCGATCTTCCCGGTATAACTCGAGG-CCAGTGAATGGACAACCGGAGAATATTTACGAAC 1321
Query 563 AAATCTCTGGGATGATAATGAAGTACATCGAGCCACAAGAATCCATCATCCTCAATGTCC 622
| || ||||||||||| |||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1320 AGATTTCTGGGATGATCATGAAGTACATCGAGCCACAAGAATCAATAATCCTCAATGTTC 1261
Query 623 TGTCAGCTACAGTCGACTTCACCACCTGTGAATCCATCCGTATGT 667
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TGTCAGCTACAGTCGACTTCACCACCTGTGAATCCATCCGTATGT 1216
> AT1G60510.1 | Symbols: DRP4D | pseudogene, putative interferon-induced
GTP-binding protein mx, blastp match of 42% identity
and 8.3e-35 P-value to GP|1399454|gb|AAC60215.1||U47946 RBTMx3
{Oncorhynchus mykiss} | chr1:22294722-22297139 FORWARD
LENGTH=2418
Length=2418
Score = 344 bits (186), Expect = 1e-93
Identities = 456/581 (78%), Gaps = 39/581 (7%)
Strand=Plus/Plus
Query 423 TGCTGGATCTGG-TAAGGGCGTCTCAGATACTCCCCTGACCCTACATGTTAAGAAGAATG 481
||| |||||||| ||||| |||||||| |||| ||||||| |||||||||||| ||
Sbjct 919 TGCAGGATCTGGCAAAGGG-GTCTCAGACGCTCCATTGACCCTCCATGTTAAGAAGGCTG 977
Query 482 GTGTTCC-TGAT-TTGACAATGGTTGATCTCCCCGGTATAACCCGTGTTCCCGTGAATGG 539
| || || | || || || ||||| ||||| ||||||||||| || | || ||||||||
Sbjct 978 GGGTCCCAT-ATCTT-ACCATGGTCGATCTTCCCGGTATAACTCGAG-GCCAGTGAATGG 1034
Query 540 ACAGCCAGAAAACATCTATGAACAAATCTCTGGGATGATAATGAAGTACATCGAGCCACA 599
||| || || || || || ||||| || ||||||||||| ||||||||||||||||||||
Sbjct 1035 ACAACCGGAGAATATTTACGAACAGATTTCTGGGATGATCATGAAGTACATCGAGCCACA 1094
Query 600 AGAATCCATCATCCTCAATGTCCTGTCAGCTACAGTCGACTTCACCACCTGTGAATCCAT 659
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1095 AGAATCAATAATCCTCAATGTTCTGTCAGCTACAGTCGACTTCACCACCTGTGAATCCAT 1154
Query 660 CCGTATGTCTCGACAAGTTGACAAAACAGGGGAACGGACTCTGGCTGTCGTGACAAAAGC 719
|||||||| || | | || | | |||||| || || || || ||
Sbjct 1155 CCGTATGT---GA-A------C------GG--A-C----TCTGGCCGTTGTCACCAAGGC 1191
Query 720 TGACATGGCTCCTGAAGGTCTCCTAGAGAAAGTAA-TGGCAGACGACGTGAGTATTGGAC 778
||||||||||| |||||||||||| ||||||||| || | || || ||||||||||| |
Sbjct 1192 AGACATGGCTCCCGAAGGTCTCCTACAGAAAGTAACTG-CGGATGATGTGAGTATTGGTC 1250
Query 779 TAGGTTACGTCTGTGTAAGGAACCGTGTAGGTGATGAGACATATCAAGAAGCTAGGATGC 838
|||||||||||||||| || ||||| | || || ||| | ||| || ||||||| ||||
Sbjct 1251 TAGGTTACGTCTGTGTCAGAAACCGCATTGGAGAAGAG-CGTATGAACAAGCTAGAATGC 1309
Query 839 ATGAAGAATTACTTTTCAAGACTCATCC-ATTGCTTT-CTATGATTGACCATGACATTGT 896
| ||||| || || |||| |||||| || || ||| || ||||||| | ||||| ||
Sbjct 1310 AAGAAGAGTTGCTCTTCAGGACTCACCCGAT-GCTGAGCT-TGATTGATGAAGACATCGT 1367
Query 897 AGGTATCCCGGTTTTAGCTAAGAAATTGATGCAGATCCAGGGAACAATGATTGCTCGTTG 956
|| ||||| ||| ||||| |||| | |||| ||||| | ||| |||||| | || ||
Sbjct 1368 GGGAATCCCTGTTATAGCTCAGAAGCTAATGCTTATCCAAGCAACGATGATTTCCCGCTG 1427
Query 957 CTTGCCTGATATCGTTCAG-AAGATCAAAGAGAAGATGGAA 996
|||||||| ||||||| | |||||||| | |||||||||
Sbjct 1428 TTTGCCTGAAATCGTTC-GCAAGATCAATCACAAGATGGAA 1467
Score = 287 bits (155), Expect = 2e-76
Identities = 262/315 (83%), Gaps = 2/315 (1%)
Strand=Plus/Plus
Query 88 GAAGCACCAATTGTATCTTCTTACAATGACCGGATCAGGCCGTTACTTGATACTGTCGAT 147
|||||||| ||| ||||||| || || || |||| |||||||| ||||| || || ||
Sbjct 100 GAAGCACCGATTATATCTTCATATAACGATAGGATTAGGCCGTTGCTTGACACGGTTGAC 159
Query 148 AGGCTGAGAAACTTGAATGTGATGAAAGAAGGGATCCAGCTTCCCACCATTGTCGTGGTT 207
| || || ||| | |||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 160 CGTCTAAGGAACCTCAATGTGATGAGAGAAGGCATTCAGCTTCCCACCATTGTCGTGGTT 219
Query 208 GGAGACCAGTCTTCGGGGAAGTCAAGTGTTCTTGAGTCCTTGGCCGGAATCAGTTTACCT 267
||||||||||| ||||||||||||||||| || || || ||||| ||||||||| |||||
Sbjct 220 GGAGACCAGTCCTCGGGGAAGTCAAGTGTCCTCGACTCGTTGGCAGGAATCAGTCTACCT 279
Query 268 CGTGGGCAAGGAATATGCACTAGGGTTCCTCTTGTGATGAGACTCCAGAGAAG-TCTTAG 326
||||| |||||||| |||||||||||||||||||| ||| |||| ||| |||| ||| ||
Sbjct 280 CGTGGCCAAGGAATCTGCACTAGGGTTCCTCTTGTCATGCGACTTCAGCGAAGCTCT-AG 338
Query 327 TCCTGAACCTGAGATCTGGCTTGAGTTCAATGACAAAAGAGTTGATACTGACGAGGAACA 386
|||| ||||||||| |||||||||| || |||||| | ||| || || ||||| ||
Sbjct 339 CCCTGTACCTGAGATATGGCTTGAGTACAGTGACAAGATTGTTCCCACGGATGAGGAGCA 398
Query 387 TATAGCTGAAGCTAT 401
|| |||||||||||
Sbjct 399 CATCGCTGAAGCTAT 413
> AT1G60520.1 | Symbols: | pseudogene, putative interferon-induced
GTP-binding protein mx, blastp match of 52% identity and
3.4e-13 P-value to GP|28475259|emb|CAD67756.1||AJ544824 MxB
protein {Danio rerio} | chr1:22297973-22298736 FORWARD LENGTH=764
Length=764
Score = 195 bits (105), Expect = 1e-48
Identities = 327/427 (77%), Gaps = 43/427 (10%)
Strand=Plus/Plus
Query 427 GGATCTGGTAAGGGCGTCTCAGATACTCCCCTGACCCTACATGTTAAGAAGAATGGTGTT 486
||||||||||| || || ||| | |||||| | || || ||||| |||||| || ||||
Sbjct 372 GGATCTGGTAAAGGTGTATCATACACTCCCTTAACTCTCCATGTCAAGAAGGCTGATGTT 431
Query 487 CCTGAT-TTGACAATGGTTGATCTCCCCG-GTATAACCCGTGTTCCCGTGAATGGACAGC 544
|||||| || ||| ||||||||||||| | | ||||| || ||||||||||||||||||
Sbjct 432 CCTGATCTT-ACATTGGTTGATCTCCCTGAG-ATAACTCGAGTTCCCGTGAATGGACAGA 489
Query 545 CAGAAAACATCTAT--GAACAAATCT-CTGGGATGATAATGAAGTACATCGAGCCACAAG 601
| |||||||| || ||| |||||| | || |||| |||||||||||| ||||||| |
Sbjct 490 CTCAAAACATCCATGCGAA-AAATCTCCAAGG-TGATTATGAAGTACATCAAGCCACATG 547
Query 602 AATCCATCATCCTCAATGTCCTGTCAGCTACAGTCGACTTCACCACCTGTGAATCCATCC 661
||||||||||||||||||| ||| |||| ||||| || || || | | | |
Sbjct 548 AATCCATCATCCTCAATGTTCTGCCAGCGACAGTTGA-TT--TCA-C-----A---A--C 593
Query 662 GTATGTCTCGACAAGTTGACAAAACAGGGGAACGGACTCTGGCTGTCGTGACAAAAGCTG 721
| || | | | |||||||||||||||||||||||||||| || ||||| | ||
Sbjct 594 -T-TG--T-G---A----ACAAAACAGGGGAACGGACTCTGGCTGTGGTCACAAAGGTTG 641
Query 722 ACATGGCTCCTGAAGGTCTCCTAGA-GAAAGTAA-TGGCAGACGACGTGAGTATTGGACT 779
|||||||| ||||||| ||| | || |||||| | || |||| || |||||||| ||| |
Sbjct 642 ACATGGCTACTGAAGGGCTCGT-GAAGAAAGTTACTG-CAGATGAGGTGAGTATCGGAAT 699
Query 780 AGGTTACGTCTGTGTAAGGAACCGTG-TAGGTGATGAGA-CATATCAAGAAGCTAGGATG 837
||||| || ||||| || ||||| | |||| || || | | | | |||||||| | |||
Sbjct 700 TGGTTATGTATGTGTTAGAAACCG-GATAGGGGAGGAAATCTT-TGAAGAAGCTCGTATG 757
Query 838 CATGAAG 844
| ||||
Sbjct 758 GAAGAAG 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5