BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338347
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60250.1 | Symbols: | B-box zinc finger family protein | ch... 778 0.0
> AT1G60250.1 | Symbols: | B-box zinc finger family protein |
chr1:22217077-22217832 REVERSE LENGTH=756
Length=756
Score = 778 bits (421), Expect = 0.0
Identities = 671/785 (85%), Gaps = 44/785 (6%)
Strand=Plus/Plus
Query 1 ATGGCTCAAGTGTGTCACACATGTAGACATGTAAAAGCCGTGATCCGTTGTGTTACAGAA 60
||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1 ATGGCTCAAGTTTGTCACACATGTAGACATGTAACAGCCGTGATCCATTGTGTTACAGAA 60
Query 61 ACTCTTAACTACTGCCTTACATGTGACTAC-TTGCACCATTGTAATAACTTACATGCAGG 119
||||||||| |||||||||||||||| || || | |||| ||||||| |||||||||
Sbjct 61 GCTCTTAACTTCTGCCTTACATGTGACAACCTT-CGCCATCATAATAACATACATGCAGA 119
Query 120 ACACGTACGTTACCAACTTTGCGATAACTGCACGATAAATCCATCTATACTTCTCTGTTA 179
||||||||||||||||||||||||||||||| |||| |||| ||||||||| |||||||
Sbjct 120 ACACGTACGTTACCAACTTTGCGATAACTGCTCGATGTATCCGTCTATACTTTTCTGTTA 179
Query 180 CGAAGACGGGAAGGCTCTTTGTCAATCTTGTTATTCAACAC-ATTACAATTGTGCCCCTA 238
|| ||||||| || |||||||||||| |||||||| ||| |||||||||||||| |||
Sbjct 180 TGAGGACGGGATGGTTCTTTGTCAATCATGTTATTCG-CACCATTACAATTGTGCCACTA 238
Query 239 ATGGCCATCACATTCAAATCGTCAGACGCATACAATACCCTAACAACAATACTCAACACC 298
|||||||||| | |||| ||||| | | | |||||| |||| ||||||||
Sbjct 239 ATGGCCATCAAACTCAAGTCGTC-------T----T-CGCTAACATGAATAATCAACACC 286
Query 299 ATGATCATGCACATATGCCTCATGTGGTTGACCATAACAATAATAATAATCGTCAGCAGC 358
||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||
Sbjct 287 ATGATCATGCACATATGCCTCATGTGGTTCACCATAACAATAACAATAATCATCAGCAGC 346
Query 359 ATCATCAGGAGCATGTGCAACATCAGGGTGGTCACCAGCAGAGAAGAGCAGGGATGTTTG 418
| | |||||| || ||||||||| | |||||||||| ||||||||
Sbjct 347 A------G---CATGTG--------GG-TGGTCACCA--A-AGAAGAGCAGAGATGTTTG 385
Query 419 AGAGGAGCTGCCATGGGGATAACAATTGCGAGAGATGGATGCTTGCAATGGGATGTGACT 478
||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 386 AGAGGAGCTGCCACGGGGATAACAATTGCGAGAGATGGATGTTTGCAATGAGATGTGAGT 445
Query 479 TGTGCTTAGCTTCGAGTTCAAATGCTGTTGTTTATTGTTCTGCACACAACAAGCTTCTAT 538
| ||| ||||||||| |||||||||||||||||||||| || |||||||| || ||||||
Sbjct 446 TATGCGTAGCTTCGAATTCAAATGCTGTTGTTTATTGTCCTACACACAACCAGATTCTAT 505
Query 539 GCGAT-GATTGCGACCGGATGACTCACATTCAAGAGGCCACGGTACCGCCGCATTCAAGG 597
||||| | |||||||||||||| ||||| ||| |||| | |||| ||||||||||| |||
Sbjct 506 GCGATAG-TTGCGACCGGATGATTCACAGTCACGAGGACGCGGTGCCGCCGCATTCGAGG 564
Query 598 TGTAAGCTTTGCGTAAACTGCAAGAGACCTTCTAGCAAATTTCTCATTGGCGGCTATCAT 657
|||||||||||||||| |||||||||||||||| || ||||||||||||||||||||
Sbjct 565 TGTAAGCTTTGCGTAATCTGCAAGAGACCTTCTCGCCGTTTTCTCATTGGCGGCTATCAG 624
Query 658 TTTAATTTCCCACGGGTTCATCCTCCGGCGGCCGAGGAGATTCCAGCGT-CGCCCCCTAG 716
||||||||||||| |||||||||||| ||||| |||| |||||||| | ||||||| |
Sbjct 625 TTTAATTTCCCACCGGTTCATCCTCCTGCGGCAGAGGGGATTCCAGT-TACGCCCCCAAC 683
Query 717 AGAACTCCCTCAACAAGATATTAATG--GATT-TCAAGATGATGATGATGACTTTTCTTG 773
|||||| |||||||||||||||||| |||| || |||||||| |||||| ||||||||
Sbjct 684 AGAACTACCTCAACAAGATATTAATTATGATTATCTAGATGATGTTGATGATTTTTCTTG 743
Query 774 GTTTG 778
|||||
Sbjct 744 GTTTG 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5