BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338356
Length=402
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60090.1 | Symbols: BGLU4 | beta glucosidase 4 | chr1:221555... 438 2e-122
AT1G60270.1 | Symbols: BGLU6 | beta glucosidase 6 | chr1:222216... 344 4e-94
AT1G60260.1 | Symbols: BGLU5 | beta glucosidase 5 | chr1:222187... 291 5e-78
AT1G45191.1 | Symbols: | Glycosyl hydrolase superfamily protei... 287 6e-77
> AT1G60090.1 | Symbols: BGLU4 | beta glucosidase 4 | chr1:22155582-22158065
FORWARD LENGTH=1539
Length=1539
Score = 438 bits (237), Expect = 2e-122
Identities = 287/311 (92%), Gaps = 4/311 (1%)
Strand=Plus/Plus
Query 1 ATGCCAACAAATAGGTATACCGATGAAGCAAGAGTCGCAGCTGAAACAGAAGGATACACC 60
||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1194 ATGGCAACAAATAGGTACACCGATGAAGCAAGATTCGCAGCTGAAACAGAAGGATATACC 1253
Query 61 AAGAGTGGAATACTTACATGCTTACATTGGTGGTGTTCTCAAATCCATAAGGAATGGATC 120
||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1254 AAGGGTGGAATACTTGCATGCCTACATTGGTGGTGTGCTCAAATCCATAAGGAATGGATC 1313
Query 121 GGACACGAGAGGCTACTTCGTATGGTCATTTATGGATTTATACGAGATTATAGGGGGGAT 180
||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 1314 AGACACGAGAGGCTACTTCGTATGGTCATTTATGGATTTATACGAGCTTCTAGGGGG-AT 1372
Query 181 ACGAGGTTGGTTTTGGGTTGTACGCTGTCAATTTCAGCGATCCTCATCGCAGGAGATCTC 240
| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1373 ATGAGGTTGGTTTTGGGTTGTACACTGTCAATTTCAGCGATCCTCATCGCAAGAGATCTC 1432
Query 241 CCAAACTCTCTGCTCATTGGTACTCTGATTTTCTCAAGGGC-ACTACCGCGTTTCTTGGT 299
|||||||||||||| ||||||||||||||||||||||||| | | | || ||||||| |
Sbjct 1433 CCAAACTCTCTGCTTATTGGTACTCTGATTTTCTCAAGGGTGAAT-CTGCCTTTCTTGAT 1491
Query 300 TCCGCAAGGCA 310
||| |||||||
Sbjct 1492 TCC-CAAGGCA 1501
> AT1G60270.1 | Symbols: BGLU6 | beta glucosidase 6 | chr1:22221677-22224257
REVERSE LENGTH=1570
Length=1570
Score = 344 bits (186), Expect = 4e-94
Identities = 258/293 (88%), Gaps = 4/293 (1%)
Strand=Plus/Plus
Query 19 ACCGATGAAGCAAGAGTCGCAGCTGAAACAGAAGGATACACCAA-GAGTGGAATACTTAC 77
|||||| || | ||| |||||| ||||| | ||||| ||||||| || | || | |||||
Sbjct 1194 ACCGATAAATCGAGATTCGCAGTTGAAAGAAAAGGACACACCAAGGA-TTGAGTTCTTAC 1252
Query 78 ATGCTTACATTGGTGGTGTTCTCAAATCCATAAGGAATGGATCGGACACGAGAGGCTACT 137
| ||||||||||||||||| || |||||||| ||||||||||| || |||||||||||||
Sbjct 1253 AAGCTTACATTGGTGGTGTGCTGAAATCCATTAGGAATGGATCAGATACGAGAGGCTACT 1312
Query 138 TCGTATGGTCATTTATGGATTTATACGAGATTATAGGGGGGATACGAGGTTGGTTTTGGG 197
| ||||||||| ||||||||||||||||||||| ||||||||||||| ||||||| |||
Sbjct 1313 TTGTATGGTCACTTATGGATTTATACGAGATTA-AGGGGGGATACGATGTTGGTTATGGA 1371
Query 198 TTGTACGCTGTCAATTTCAGCGATCCTCATCGCAGGAGATCTCCCAAACTCTCTGCTCAT 257
|||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1372 TTGTACTCTGTCAATTTCAGTGATCCTCATCGCAAAAGATCTCCCAAACTCTCTGCTCAT 1431
Query 258 TGGTACTCTGATTTTCTCAAGGGCACTACCGCGTTTCTTGGTTCCGCAAGGCA 310
||||| ||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 1432 TGGTATTCTGATTTTCTCAAGGGCAAAACCGCTTTTCTTGGTTCT-CAAGGCA 1483
> AT1G60260.1 | Symbols: BGLU5 | beta glucosidase 5 | chr1:22218788-22221409
REVERSE LENGTH=1543
Length=1543
Score = 291 bits (157), Expect = 5e-78
Identities = 233/269 (87%), Gaps = 8/269 (3%)
Strand=Plus/Plus
Query 45 AACAGAAGGATACACCA-AGAGTGGAATAC-TTACATGCTTACATTGGTGGTGTTCTCAA 102
|||| ||||||||| || || ||||||||| | | ||||||||||||||||||| |||||
Sbjct 1151 AACACAAGGATACA-CATAGGGTGGAATACATGA-ATGCTTACATTGGTGGTGTGCTCAA 1208
Query 103 ATCCATAAGGAATGGATCGGACACGAGAGGCTACTTCGTATGGTCATTTATGGATTTATA 162
|||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||
Sbjct 1209 ATCCATAAGGAATGGATCAGACACTAGAGGCTATTTTGTATGGTCATTTATGGATTTATT 1268
Query 163 CGAGATTATAGGGGGGATACGAGGT-TGGTTTTGGGTTGTACGCTGTCAATTTCAGCGAT 221
|||| |||||||| || ||||| | ||||| ||| |||||| |||| |||||||| |||
Sbjct 1269 CGAGCTTATAGGGCGG-TACGA-TTATGGTTATGGATTGTACTCTGTAAATTTCAGTGAT 1326
Query 222 CCTCATCGCAGGAGATCTCCCAAACTCTCTGCTCATTGGTACTCTGATTTTCTCAAGGGC 281
|| ||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1327 CCACATCGCAAGAGATCTCCTAGACTCTCTGCTCATTGGTACTCTGATTTTCTCAAGGGC 1386
Query 282 ACTACCGCGTTTCTTGGTTCCGCAAGGCA 310
| || | ||||||| |||| ||||||
Sbjct 1387 AAAACTTCTTTTCTTGATTCCA-AAGGCA 1414
> AT1G45191.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr1:17116044-17119174 FORWARD LENGTH=1688
Length=1688
Score = 287 bits (155), Expect = 6e-77
Identities = 258/306 (84%), Gaps = 13/306 (4%)
Strand=Plus/Plus
Query 10 AATAGGTATACCGATGAAGCAAGAGTCGCAGCTGAAACAGAAGGATACACCAA-GAGTGG 68
||| |||| | | ||||| ||||| | | ||||| |||| ||||| ||||||| || | |
Sbjct 1255 AAT-GGTAAAACAATGAACCAAGATTTGGAGCTGCAACAAAAGGACACACCAAGGA-TTG 1312
Query 69 AATACTTACATGCTTACATTGGTG-GTGTTCTCAAATCCATAAGGAATGGATCGGACACG 127
| |||||| ||||||||||||||| | || |||||| | | ||||||||||| ||||||
Sbjct 1313 AGTACTTAGATGCTTACATTGGTGCG-GTGCTCAAAGCTGTTAGGAATGGATCAGACACG 1371
Query 128 AGAGGCTACTTCGTATGGTCATTTATGGATTTATACGAGATTA-TAGGGGGGATACGAG- 185
|||||||||||||||||||||||||||||||| ||||| |||| || || |||| ||
Sbjct 1372 AGAGGCTACTTCGTATGGTCATTTATGGATTTGTACGA-ATTACTAAACGG-ATACAAGA 1429
Query 186 GTTGGTTTTGGGTTGTACGCTGTCAATTTCAGCGATCCTCATCGCAGGAGATCTCCCAAA 245
|| | |||||| |||||| ||||||||||||| ||||| ||||||| |||||||||||||
Sbjct 1430 GTAG-TTTTGGATTGTACTCTGTCAATTTCAGTGATCCCCATCGCAAGAGATCTCCCAAA 1488
Query 246 CTCTCTGCTCATTGGTACTCTGATTTTCTCAAGGGCACTACCG-CGTTTCTTGGTTCCGC 304
||||||||||| |||||||||| |||||||||||||| ||| | |||||||||||| |
Sbjct 1489 CTCTCTGCTCACTGGTACTCTGGTTTTCTCAAGGGCAA-ACCCACATTTCTTGGTTCC-C 1546
Query 305 AAGGCA 310
||||||
Sbjct 1547 AAGGCA 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19001209122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5