BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338371
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19930.1 | Symbols: | Galactose oxidase/kelch repeat superf... 490 1e-137
AT4G39550.1 | Symbols: | Galactose oxidase/kelch repeat superf... 296 3e-79
AT5G38680.1 | Symbols: | Galactose oxidase/kelch repeat superf... 159 4e-38
> AT1G19930.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:6917020-6918138 FORWARD LENGTH=1035
Length=1035
Score = 490 bits (265), Expect = 1e-137
Identities = 446/528 (84%), Gaps = 33/528 (6%)
Strand=Plus/Plus
Query 58 TTGAATCTTTCACTTCCAGAA-GATTTGATAGTGAGTATCTTAGCCCGTGTCTCGAGATT 116
|||| | ||||||||||| || |||||| |||||| |||||||||||||||||||| ||
Sbjct 28 TTGATTTTTTCACTTCCA-AATGATTTGTTAGTGAACATCTTAGCCCGTGTCTCGAGGTT 86
Query 117 GTATTATCCAACTCTCTCCTTAGTCTCCAAGCGCTTCCGCTCGCTCCTTACTTCACCGGA 176
| ||||||||| ||||||||||||||||||||| ||| ||||| ||||||||| ||||||
Sbjct 87 GGATTATCCAATTCTCTCCTTAGTCTCCAAGCGTTTCAGCTCGGTCCTTACTTTACCGGA 146
Query 177 GCTTTACCAAACCCGGTCACTATTAGGTCGTAGCGATAATTTTCTCTATGTATGCTTAC- 235
||||||||| |||||||||||| |||||| || ||| |||| ||| ||||| |||||||
Sbjct 147 GCTTTACCAGACCCGGTCACTAGTAGGTCTTACCGAGAATTGTCTTTATGTGTGCTTACT 206
Query 236 GATTCTCTCGTACTGACCGAATCCCTCGCTGGTTCATGCTGTGTCGGAGACCAAATCAAA 295
| | ||||||| ||||||| |||||| ||||||||| ||| ||||||||||| | |
Sbjct 207 G-TCCTCTCGTGCTGACCGTATCCCTAGCTGGTTCAAGCTTTGTCGGAGACC---T---A 259
Query 296 TCCTAACCAGTGACACTaagaagaagaagaagaagaagTCAAGCGGGTATGTTTTGGCAA 355
||||| ||||||||||| || ||||||||| ||||||||||||||||
Sbjct 260 TCCTAGCCAGTGACACT-------------AG--GAAGTCAAGTGGGTATGTTTTGGCAA 304
Query 356 CAATCCCAATT-CACCATTCTCCTCCTGCGCAC-GGTTCAGGTCTCGTGGCGGTTGGTTC 413
|||| |||||| || |||||||||||| |||| || ||| |||||||||||||||||||
Sbjct 305 CAATACCAATTCCA-CATTCTCCTCCTTTGCACAGG-TCAAGTCTCGTGGCGGTTGGTTC 362
Query 414 TAATATCTACAACATTGGAGGATCCATCTACGATTCGCCC-TCATCAAATG-CTTCAATC 471
||||||||| |||||||| |||||||||| | | || || ||||| | || || |||||
Sbjct 363 TAATATCTATAACATTGGCGGATCCATCTCCCAATC-CCAGTCATCTAGTGTCT-CAATC 420
Query 472 CTAGATTGCTGGTCTCACACATGGCTCAAAGCTCCAAGCATGCATGTGGAGCGGGATTAC 531
||||| |||||||||||||| |||||| ||| |||||||||||| ||||||||||| |||
Sbjct 421 CTAGACTGCTGGTCTCACACGTGGCTCGAAGGTCCAAGCATGCAGGTGGAGCGGGAGTAC 480
Query 532 CCATCAGCCAATTTCCTTGATGAAAAGATATACGTAACAGGAGGCTGT 579
|||||||||| ||| ||||||| |||||||||||||||||||||||||
Sbjct 481 CCATCAGCCAGTTTACTTGATGGAAAGATATACGTAACAGGAGGCTGT 528
> AT4G39550.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18380526-18381905 REVERSE LENGTH=1380
Length=1380
Score = 296 bits (160), Expect = 3e-79
Identities = 486/634 (77%), Gaps = 60/634 (9%)
Strand=Plus/Plus
Query 61 AATCTTTCACTTCCAGAAGATTTGA-TAGTGAGTAT-CTTAGCCCGTGTCTCGAGATTGT 118
|||| |||||||||||| ||||| | ||||||| | |||||| || |||||||||||||
Sbjct 116 AATCCTTCACTTCCAGATGATTT-AGTAGTGAG-CTGCTTAGCACGCGTCTCGAGATTGT 173
Query 119 ATTATCCAACTCTCTCCTTAGTCTCCAAGCGCTTCCGCTCGC-TCCTTACTTCACCGGAG 177
|||| |||||||||||||||||||||||| |||||||||| | | || ||||||| ||
Sbjct 174 ATTACCCAACTCTCTCCTTAGTCTCCAAGAGCTTCCGCTC-CTTGATTGCTTCACCAGAT 232
Query 178 CTTTACCAA-ACCCGGTCACTATTAGGTCGTAGC-GATAATTTTCTCTATGTATGCTTAC 235
|| || ||| ||||| || || |||||||| | | || | || ||||||||| || ||||
Sbjct 233 CTCTA-CAAGACCCGATCTCTGTTAGGTCGCA-CTGAGAGTTGTCTCTATGTGTGTTTAC 290
Query 236 GATTCTCTCG-TACTGA-CCGAATCCCTCGCTGGTTCA-TGCTGTGTCGGAGACCAAATC 292
| | | |||| || || |||||| ||||||| | || |||| || ||| ||||
Sbjct 291 -AGGAGAAAGATTCTGACCCTAA-CCCTCGTTGGTTCACT-CTCTGTCTGAAACCTAATC 347
Query 293 -AAATCCTAACCAGTG--A-CACT------------aagaagaagaagaagaag-a-a-g 333
|| | ||||||| || | |||| |||||||||||||||||| | | |
Sbjct 348 GAACT-CTAACCAATGATATCACTGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATG 406
Query 334 TCAAGCGGGTATGTTTTGGCAACAATCCCAATTCACCATTCTCCTCCTGCGCAC-GGTTC 392
||||| ||||||||| |||| |||||||| ||| |||||||| ||||||| || || ||
Sbjct 407 TCAAGTGGGTATGTTCTGGCTGCAATCCCAGTTCTCCATTCTCGTCCTGCGTACTGG-TC 465
Query 393 AGGTCTCGTGGCGGTTGGTTCTAATATCTACAACATTGGAGGATCCATCTACGATTCGCC 452
|||||||| || |||||||||||||||||||||||||||||| ||||| || | | |
Sbjct 466 GGGTCTCGTTGCCGTTGGTTCTAATATCTACAACATTGGAGGACCCATCGACAAAGCACA 525
Query 453 CTCATCAAAT-G-CTTCAATCCTAGATTG-CTGGTCTCACACATGGCTCAAAGCTCCAAG 509
||| || | | | || | |||| || || | | ||||||||||||| | | | |||| |
Sbjct 526 CTCGTCTA-TCGTCT-CGGTCCTGGACTGTCAG-TCTCACACATGGCACGAGGGTCCAGG 582
Query 510 CATGC-ATGTGGAGCGG-GATTACCCATCAGCCAAT-TTCCTTGATGAAAAGATATACGT 566
|||| | || |||||| ||| | || | || ||| || |||| | ||||||||| ||
Sbjct 583 CATGAGA-GTAGAGCGGAGAT-ATCCGGCGGCTAATGTTG-TTGAAGGAAAGATATATGT 639
Query 567 AACAGGAGGCTGTTATAA-ACA-CTA-CAAT-CCATCAAACTGGATGGAGGTTTTCGATC 622
|||||||||||| | || || | | |||| || || ||||||||||||||||||||||
Sbjct 640 AACAGGAGGCTGC-A-AAGACTGC-AGCAATTCC-TCCAACTGGATGGAGGTTTTCGATC 695
Query 623 -TAAAAACAAAAACTTGGGAGCCTGTGTTGAGCC 655
|| || | ||| |||||||| |||| | |||||
Sbjct 696 CTAGAACCCAAA-CTTGGGAGTCTGTCTCGAGCC 728
> AT5G38680.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:15477324-15479040 FORWARD LENGTH=1074
Length=1074
Score = 159 bits (86), Expect = 4e-38
Identities = 352/473 (74%), Gaps = 47/473 (10%)
Strand=Plus/Plus
Query 67 TCACTTCCAGAAGATTTGATAGTGAGTAT-CTTAGCCCGTGTCTCGAGATTGTATTATCC 125
|||||||| || | ||||||| | || | | | || || ||||| ||||||||||||||
Sbjct 52 TCACTTCCCGATGCTTTGATAATAAG-CTGCATCGCACGAGTCTCAAGATTGTATTATCC 110
Query 126 AACTCTCTCCTTAGTCTCCAAGCGCTTCCGCTCGCTCCTTA-CTTCACCGGAGCTTTACC 184
| ||||||||| ||||||||| |||| || || |||| || |||||||||||||||| |
Sbjct 111 GATTCTCTCCTTTGTCTCCAAGAGCTTTCGATCTCTCC-TAGCTTCACCGGAGCTTTA-C 168
Query 185 AA--ACCCGGTCACTATTAG-GTCGTAGCGATAATTTTCTCTATGTATGCTTACGA-TTC 240
|| | |||||||| || | || | ||| || ||| |||||||||||| | ||
Sbjct 169 AAGGA-ACGGTCACTCTT-GAACCGCACCGAGGGTTGTCTATATGTATGCTTA-TACTTA 225
Query 241 TCTCGTACTGACCGAATCCCTCGCTGGTTCA-TGCTGTGTC-GGAGACCAAATCAAATCC 298
|| | ||| | | |||| ||||||| | | || || | || ||| ||||| ||
Sbjct 226 AATCCTTTTGA--G-AGCCCTAGCTGGTTTACT-CTCTG-CTTGAAACCTGATCAAGCCC 280
Query 299 TAACCAGTGACACTaagaagaag-aagaagaagaagTCAAGCGGGTATGTTTTGGCAACA 357
| | | | || | || ||| || |||||||||||||| |||||||||||||| |||
Sbjct 281 T-ATC--T---TCTGA-AACAAGTAATAAGAAGAAGTCAAGTGGGTATGTTTTGGCTACA 333
Query 358 ATCCCAATT-CACCATTCTCCTCCTGCGC-ACGGTT-CAGGTCTCGTGGCGGTTGGTTCT 414
| ||||| || ||| ||| || || || || ||| || ||||||||||||||||||||
Sbjct 334 GTATCAATTCCA-CATCCTCGTCTTGTGCAAC-GTTCCA-GTCTCGTGGCGGTTGGTTCT 390
Query 415 AATATCTACAACATTGG-AGGATCCATCT-ACGATTCGCCCTCATCAAATG-CTTCAATC 471
||||||||||||||||| || |||||| | || || | || | | || || | ||
Sbjct 391 AATATCTACAACATTGGCAG-ATCCATATCACC-TTA-C--TC-T-AG-TGTCT-CGATT 441
Query 472 CTAGATTGCTGGTCTCACACATGGCTCAAAGCTCCAAGCATGC-ATGTGGAGC 523
| |||||| |||||||||| |||| | | ||||||||| ||| | |||||||
Sbjct 442 TTTGATTGCCGGTCTCACACGTGGCGCGAGGCTCCAAGCTTGCCA-GTGGAGC 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5