BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338390
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60040.1 | Symbols: AGL49 | AGAMOUS-like 49 | chr1:22119075-... 411 6e-114
AT1G59722.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 248 5e-65
> AT1G60040.1 | Symbols: AGL49 | AGAMOUS-like 49 | chr1:22119075-22119929
REVERSE LENGTH=855
Length=855
Score = 411 bits (222), Expect = 6e-114
Identities = 346/403 (86%), Gaps = 19/403 (5%)
Strand=Plus/Plus
Query 1 ATGGCTCCTCGTGATAAGAAACCTAACAAGTCC--TG-CGATGATGATGATTTGCAGAGG 57
|||||||||||| | |||||||||||||||||| || ||||||| ||||||||| | |
Sbjct 1 ATGGCTCCTCGTCAGAAGAAACCTAACAAGTCCGATGATGATGATGGTGATTTGCATA-G 59
Query 58 AAGAAGAAACAGAATTTTTTCAAACAGAGATTTCCTGGTTTTAAGAAGAAAGCAACAGAG 117
||||||||||| |||||||||||||||||||| || |||||||||||||| |||||
Sbjct 60 --GAAGAAACAGAGCTTTTTCAAACAGAGATTTCCAGGCTTTAAGAAGAAAGCCTCAGAG 117
Query 118 CTTTCTGTTCTCTGCGGTAACTCTGTTGGTTTCATCTGTTACGGTCCCGACAACGATCTC 177
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 118 CTCTCTGTTCTCTGCGGCAACTCTGTCGGTTTCATCTGTTACGGTCCCGACAACGATCTC 177
Query 178 CATGTTTGGCCTCAACCTCAAGATCATAACCCACAAACCCTAACACAA-ATCGTGGCCAA 236
|||||||||||||| |||||||||||||||||||| ||||| || | |||||||||||
Sbjct 178 CATGTTTGGCCTCAGTCTCAAGATCATAACCCACAAGCCCTA-CATGAGATCGTGGCCAA 236
Query 237 GTTCAATGCGTTGAGTGATCACAAGAGGAAGCATCACGCCTGCGATCTCTACGACTTCCC 296
||||||||| ||||||||| | | ||||||| |||| || || |||||| | ||||||||
Sbjct 237 GTTCAATGCCTTGAGTGATGAGAGGAGGAAGAATCATGCATGTGATCTCAATGACTTCCC 296
Query 297 T-A--ATCTCAAGGGTTTGTC-CG-GAGACCAGTTGAGGAACCATCTCGTTAACCTTGAC 351
| | |||||||||||||||| || ||| |||| ||||| |||||| || ||||||||
Sbjct 297 TCATCATCTCAAGGGTTTGTCTCGTGAGG--AGTTAAGGAAGCATCTCCTTCACCTTGAC 354
Query 352 TCTCACTTGA-TTGGAGTCAAGCAACACAAGATA-AA-TTCTT 391
||||| || | ||||||||| | |||| |||||| || |||||
Sbjct 355 TCTCAATT-ACTTGGAGTCAGGGAACAAAAGATAGAAATTCTT 396
> AT1G59722.1 | Symbols: | unknown protein; Has 9 Blast hits to
9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:21944689-21945221 REVERSE LENGTH=471
Length=471
Score = 248 bits (134), Expect = 5e-65
Identities = 190/216 (88%), Gaps = 7/216 (3%)
Strand=Plus/Plus
Query 386 ATTCTTCTCTTC-TTGATCCATTCACATTAGGGTTTTCCG--GCCATGATTATTTCCTGG 442
||| ||||| || | ||||| ||||| ||||||||||||| | | ||||| |||| |
Sbjct 174 ATT-TTCTC-TCATGGATCCTTTCACGTTAGGGTTTTCCGTAGGC--GATTACTTCCCAG 229
Query 443 CGGATTCAATGGCGGTCACAGATAATTGGGAGGTCTGTGCCAACAATGGTGTTTGGGATC 502
| ||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 230 CTGATCCAATGGAGGTCACATATAATTGGGGGGTCTGTGCCAACAATGGTGTTTGGGATC 289
Query 503 CTTCTTGGCTAGATTTTGATTTTTCGTCAACACTCTTTACTGATGATTGGACTGTTTCTG 562
||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||
Sbjct 290 CTTCTTGGCTAGATTTTGATTTTTCATCAACACTATTTACTAATGATTGGACTGTTTCTG 349
Query 563 GCTACAATCCACTTTTGGCAGCTACTGATTCTTTTA 598
||||||| |||||||||| ||| ||||||| |||||
Sbjct 350 GCTACAACCCACTTTTGGGAGCCACTGATTTTTTTA 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5