BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338392
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504... 649 0.0
AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:112... 353 2e-96
AT1G43140.1 | Symbols: | Cullin family protein | chr1:16232785... 313 3e-84
AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964... 82.4 1e-14
> AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504-22003385
FORWARD LENGTH=1125
Length=1125
Score = 649 bits (351), Expect = 0.0
Identities = 568/669 (85%), Gaps = 30/669 (4%)
Strand=Plus/Plus
Query 17 AGATTAAATTTGAGGAAGGATGGTCCTTC-TTGGAGAAAGGTGTTACCAAGATGATAAGG 75
|||||||||||||||||||||||||| | || |||||||| |||||||| ||||||||
Sbjct 32 AGATTAAATTTGAGGAAGGATGGTCCAACATT-CAGAAAGGTATTACCAAGCTGATAAGG 90
Query 76 ATTCTAGAAGGAGAGCCTGAACCACCATTTGAATCTAACCAATATATGAATCTTTACACG 135
|||||||||||||||||||||||| ||||| | | || ||| | | || |||||||||
Sbjct 91 ATTCTAGAAGGAGAGCCTGAACCAACATTTTATTTTAGTGAATGTTTTAAACTTTACACG 150
Query 136 ACTGCCTACAG-TATGTGCACCCAGA-AACCTGATTACTCAGCA-CAGATTTATGATAAA 192
| | |||| | |||||| ||||| | || ||||| ||| || ||| ||||||| |||
Sbjct 151 ATTATCTAC-GATATGTGTGTCCAGAGATCC-GATTATTCA-CAGCAGCTTTATGA-AAA 206
Query 193 -TATCGTGAAA-TGATTGAAGATTATGTTA-CACAAACGGTGTTGCCGTCGTTAAGGGAG 249
|||||| ||| | |||||||||||| || | ||||||||||||||||| |||||||||
Sbjct 207 GTATCGT-AAAGTAATTGAAGATTATACTATC-CAAACGGTGTTGCCGTCTTTAAGGGAG 264
Query 250 AAGCATGATGAATATATGCTAAGAGAGCTTGTTAAGAGGTGGGATAACCATAAAGTTCTG 309
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 265 AAGCATGATGAAGATATGCTAAGAGAGCTTGTTAAGAGGTGGAATAACCATAAAATTATG 324
Query 310 GTTAGATGGTTTATC-AGATTCTTCAATTATATAGACCGTTACTAT-GTTATTCGGAG-A 366
|| | |||||| | | || |||||| |||||| |||||| ||| | ||| |||||| |
Sbjct 325 GTCAAATGGTTAAGCAAG-TTCTTCGTTTATATTGACCGTCACT-TGGTTCGTCGGAGTA 382
Query 367 A-A----AGTTCAATCACTGAG-GGAAGTTGGCTTGACATG-TTTCAACAACCTGGTTTA 419
| | | ||| |||||| || |||||||| |||||||| |||| ||||||||||
Sbjct 383 AGATTCCAATTCCATCACT-AGATGAAGTTGGATTGACATGCTTTC-TTGACCTGGTTTA 440
Query 420 TCGTGAGATGCAGTCCACGGCCACAGAAGCTGTAATTGCACTTTTTCATAAAGAACGTGA 479
| ||||||||||||||||||||| ||||| |||||| |||||| ||||||||||||||||
Sbjct 441 TTGTGAGATGCAGTCCACGGCCAAAGAAGTTGTAATAGCACTTATTCATAAAGAACGTGA 500
Query 480 GGGCGAACAGATTGATAGGGAACTAGTGAAAAATGTATTAGATGTCTATGTAGAGAATGG 539
|||||||||||| ||||||| ||||||||| || ||||||||| ||||||| ||||||||
Sbjct 501 GGGCGAACAGATAGATAGGGCACTAGTGAAGAACGTATTAGATATCTATGTGGAGAATGG 560
Query 540 GCTGGGAA-CTATGAAAAAATATGAAGAGGATTTTGAAAGCTTCATGCTTCAAGATACTG 598
| |||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GATGGGAACCT-TGGAAAAATATGAAGAGGATTTTGAAAGCTTCATGCTTCAAGATACTG 619
Query 599 CCTCATACTATTCTCGCAAGGCGTCAAAGTGGATCAAGGGGGATTCTTGTCCTGCTTACA 658
| || |||||||||||||||||||||| ||||| | ||| |||||||||||||| |||||
Sbjct 620 CTTCTTACTATTCTCGCAAGGCGTCAAGGTGGACCGAGGAGGATTCTTGTCCTGATTACA 679
Query 659 TGCTAAAGG 667
|| ||||||
Sbjct 680 TGATAAAGG 688
> AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:1128622-1133696
FORWARD LENGTH=2747
Length=2747
Score = 353 bits (191), Expect = 2e-96
Identities = 485/623 (78%), Gaps = 36/623 (6%)
Strand=Plus/Plus
Query 59 TTACCAAGATGATAA-GGATTCTAGAAGGAGAGCCTGAACCACCATTTGAATCTAACCAA 117
|||| ||| ||| || ||||||| |||||| | ||| ||| ||||||| ||| | |||
Sbjct 325 TTACTAAGCTGA-AACGGATTCTGGAAGGATTGAATGAGCCAGCATTTGACTCTGAGCAA 383
Query 118 TATATGAAT-CTTTACACGACTGCCTACAGTATGTGCACCCAGAAA----C-C-TGATTA 170
|||||| || ||||| |||||| ||||| ||||||||||||||| | | ||||||
Sbjct 384 TATATG-ATGCTTTATACGACTATCTACAACATGTGCACCCAGAAACCTCCTCATGATTA 442
Query 171 CTCAGCA-CAGATTTATGATAAATATCGTGAAATG-A-TTGAAGATTATGTT-ACACAAA 226
|||| || ||| ||||||| || ||||| | || | | |||| || ||| || || | ||
Sbjct 443 CTCA-CAGCAGCTTTATGACAAGTATCG-GGAA-GCATTTGAGGAATATATTAACTC-AA 498
Query 227 CGGTGTTGCCGT-CGTTAAGGGAGAAGCATGATGAATATATGCTAAGAGAGCT-TGTTAA 284
| || ||||| | |||| ||||||||||||||||| | |||||| | ||||| | ||||
Sbjct 499 CAGTTTTGCC-TGCGTTGAGGGAGAAGCATGATGAGTTTATGCTGCGGGAGCTAT-TTAA 556
Query 285 GAGGTGG-GATAACCATAAAGTTCTGGTTAGATGGTTTAT-CAGATTCTTCAATTATATA 342
|| ||| | ||||||||||| |||| |||||| ||| | | |||||| | || |
Sbjct 557 AAGATGGTCA-AACCATAAAGTAATGGTCAGATGG-CTATCCCGCTTCTTCTACTACCTT 614
Query 343 GACCGTTACTAT-GTTATTCGGAGAAAAGTTCAATCACTGAGGGAAGTTGGCTTGACATG 401
|||||||||| | || ||||||| | ||| | |||||| ||||||||| |||||||
Sbjct 615 GACCGTTACT-TCATTGCTCGGAGATCACTTCCACCACTGAATGAAGTTGGCCTGACATG 673
Query 402 TTTCAACAACCTGGTTTATCGTGAGATGCAGTCCACGGCCACAGAAGCTGTAATTGCACT 461
||| ||||||||||| |||| | || || | || || | |||||||||| || ||
Sbjct 674 CTTCCGTGACCTGGTTTATAATGAGCTACATTCTAAGGTCAAACAAGCTGTAATAGCTCT 733
Query 462 TTTTCATAAAGAACGTGAGGGCGAACAGATTGATAGGGAACTAG-TGAAAAATGTATTAG 520
| || |||||||||| |||||||| ||||||||||||| || | ||||||| |||||||
Sbjct 734 TGTTGATAAAGAACGGGAGGGCGAGCAGATTGATAGGGCCCT-GCTGAAAAACGTATTAG 792
Query 521 ATGTCTATGTAGAGAATGGGCT-GGGAACTATGAAAAAATATGAAGAGGATTTTGAAAGC 579
|| |||||||||||| ||| | ||| | ||| | | |||||||| ||||||||||||
Sbjct 793 ATATCTATGTAGAGATTGGAATGGGGCA-GATGGAGAGGTATGAAGAAGATTTTGAAAGC 851
Query 580 TTCATGCTTCAAGATACTGCCTCATACTATTCTCGCAAGGCGTCAAAG-TGGAT-CAAGG 637
|||||||||||||||||| | || || |||||||||||||| |||| | ||||| || ||
Sbjct 852 TTCATGCTTCAAGATACTTCTTCGTATTATTCTCGCAAGGCATCAA-GCTGGATTCA-GG 909
Query 638 GGGATTCTTGTCCTGCTTACATG 660
|||||||| |||| |||||||
Sbjct 910 AAGATTCTTGCCCTGATTACATG 932
> AT1G43140.1 | Symbols: | Cullin family protein | chr1:16232785-16236109
FORWARD LENGTH=2166
Length=2166
Score = 313 bits (169), Expect = 3e-84
Identities = 262/307 (85%), Gaps = 6/307 (2%)
Strand=Plus/Plus
Query 746 CTGAGGAGTGTC-TAAAACGAGAGAGGGAGAGAGTCACTCACTACCTTCATTCAAGCACC 804
|||| ||||||| |||| | |||| ||| ||||||||| ||||||||||||| | |||
Sbjct 698 CTGAAGAGTGTCTTAAATTG-GAGAAGGAAAGAGTCACTAACTACCTTCATTCTACCACT 756
Query 805 GAACCCAAACTGGTTGAGAAAGTACAAAATGAATTGTTGGTCGTGGTTGCAAAACAGCTT 864
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 757 GAGCCCAAACTAGTTGAGAAAGTACAAAATGAATTGTTGGTAGTGGTTGCAAAACAGCTT 816
Query 865 CTAGAAAATGAGTC-CTCAGGCTGT-TGTGCATTGCTAAGGGATAAAAAGATGGATGATC 922
||||||||||| | ||| || || | ||||||| |||| ||| | ||||||| |||||
Sbjct 817 ATAGAAAATGAG-CACTCTGGGTGCCT-TGCATTGTTAAGAGATGACAAGATGGGTGATC 874
Query 923 TCTCTAGGATGTACATGCTTTATTGTCCAATCCCTCAAAGCTTGGAACATGTTGCAGACT 982
|||| |||||||||| ||||||| ||| |||||| ||| | ||||||| | |||||||||
Sbjct 875 TCTCGAGGATGTACAGGCTTTATCGTCTAATCCCGCAAGGGTTGGAACCTATTGCAGACT 934
Query 983 TATTCAAGCAGCATATTACTACAGAGGGATATACCCTTATGAAACAAGCTGACGACGCAG 1042
|||||||||||||| ||||| |||| ||| || ||||||| |||||||| | ||||||||
Sbjct 935 TATTCAAGCAGCATGTTACTGCAGAAGGAAATGCCCTTATCAAACAAGCCGCCGACGCAG 994
Query 1043 CTAATAA 1049
||| |||
Sbjct 995 CTACTAA 1001
> AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964-22006172
FORWARD LENGTH=768
Length=768
Score = 82.4 bits (44), Expect = 1e-14
Identities = 63/72 (88%), Gaps = 2/72 (3%)
Strand=Plus/Plus
Query 752 AGTGTCTA-AAACGAGAGAGGGAGAGAGTCACTCACTACCTTCATTCAAGCACCGAACCC 810
||||| || ||| | |||||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct 668 AGTGTTTACAAA-GGGAGAGGGAGAGAGTCACTCACTACCTTCATCCAACCACTGAACCC 726
Query 811 AAACTGGTTGAG 822
||||| |||||
Sbjct 727 AAACTATTTGAG 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59688448005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5