BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg338394

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G07700.3 | Symbols:  | Thioredoxin superfamily protein | chr...   231    2e-60


> AT1G07700.3 | Symbols:  | Thioredoxin superfamily protein | chr1:2379647-2381362 
FORWARD LENGTH=1539
Length=1539

 Score =  231 bits (125),  Expect = 2e-60
 Identities = 125/125 (100%), Gaps = 0/125 (0%)
 Strand=Plus/Plus

Query  149   AGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTTATCTTCC  208
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1066  AGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTTATCTTCC  1125

Query  209   TTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGGCTCCGTA  268
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1126  TTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGGCTCCGTA  1185

Query  269   TCAAG  273
             |||||
Sbjct  1186  TCAAG  1190



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14024701971


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5