BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg338398 Length=543 Score E Sequences producing significant alignments: (Bits) Value AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964... 278 5e-74 AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504... 257 6e-68 AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:112... 139 2e-32 > AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964-22006172 FORWARD LENGTH=768 Length=768 Score = 278 bits (150), Expect = 5e-74 Identities = 188/206 (91%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 145 ATTCATAAAGAACGTGAAGGCGAACAAATTGATAGAGAACTAGTGAGAAACATAATAAAT 204 ||||||||||||||||| || |||||||||||||||||||| ||||||||| ||||| || Sbjct 457 ATTCATAAAGAACGTGAGGGTGAACAAATTGATAGAGAACTTGTGAGAAACGTAATAGAT 516 Query 205 GTCTATGTTGAGAATGGGATGGGATC-CATAAAACAATATGAAGAGGATTTTGAAA-GCT 262 |||| ||||||||||||||||||| | | ||||| ||||||||||||||||||||| || Sbjct 517 GTCTTTGTTGAGAATGGGATGGGAACTC-TAAAAAAATATGAAGAGGATTTTGAAAGGC- 574 Query 263 TCATGCTTCAAGATACTGCTTCTTACTATTTTAGCAAGGCGTCAAGGTGGATCGAGGAGG 322 |||||||||||||||||||||||||||||| ||||||||| |||||||||||| | |||| Sbjct 575 TCATGCTTCAAGATACTGCTTCTTACTATTCTAGCAAGGCATCAAGGTGGATCCAAGAGG 634 Query 323 ATTCTTGTCCTGATTACACGCTAAAG 348 | ||||||| |||||||||||||||| Sbjct 635 AGTCTTGTCTTGATTACACGCTAAAG 660 Score = 132 bits (71), Expect = 4e-30 Identities = 77/80 (96%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 406 CCTCAAGAGTGTCTACAAAGGGAGAGGGAGAGAGTCACTCACTACCTTCATCCAACCACT 465 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CCTCAACAGTGTTTACAAAGGGAGAGGGAGAGAGTCACTCACTACCTTCATCCAACCACT 720 Query 466 GAACCCAAACTATTTAAGGT 485 ||||||||||||||| |||| Sbjct 721 GAACCCAAACTATTTGAGGT 740 > AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504-22003385 FORWARD LENGTH=1125 Length=1125 Score = 257 bits (139), Expect = 6e-68 Identities = 185/207 (89%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 145 ATTCATAAAGAACGTGAAGGCGAACAAATTGATAGAGAACTAGTG-AGAAACATAATAAA 203 ||||||||||||||||| |||||||| || ||||| | ||||||| || ||| || || | Sbjct 484 ATTCATAAAGAACGTGAGGGCGAACAGATAGATAGGGCACTAGTGAAG-AACGTATTAGA 542 Query 204 TGTCTATGTTGAGAATGGGATGGGATCCAT-AAAACAATATGAAGAGGATTTTGAAAGCT 262 | ||||||| ||||||||||||||| || | ||| |||||||||||||||||||||||| Sbjct 543 TATCTATGTGGAGAATGGGATGGGAACCTTGGAAA-AATATGAAGAGGATTTTGAAAGCT 601 Query 263 TCATGCTTCAAGATACTGCTTCTTACTATTTTAGCAAGGCGTCAAGGTGGATCGAGGAGG 322 |||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| Sbjct 602 TCATGCTTCAAGATACTGCTTCTTACTATTCTCGCAAGGCGTCAAGGTGGACCGAGGAGG 661 Query 323 ATTCTTGTCCTGATTACACGCTAAAGG 349 |||||||||||||||||| | |||||| Sbjct 662 ATTCTTGTCCTGATTACATGATAAAGG 688 > AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:1128622-1133696 FORWARD LENGTH=2747 Length=2747 Score = 139 bits (75), Expect = 2e-32 Identities = 157/196 (80%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 149 ATAAAGAACGTGAAGGCGAACAAATTGATAGAGAACTAG-TGAGAAACATAATAAATGTC 207 |||||||||| || ||||| || |||||||| | || | ||| |||| || || || || Sbjct 739 ATAAAGAACGGGAGGGCGAGCAGATTGATAGGGCCCT-GCTGAAAAACGTATTAGATATC 797 Query 208 TATGTTGAGAATGGGATGGGATCCATA-AAACA-ATATGAAGAGGATTTTGAAAGCTTCA 265 ||||| |||| ||| ||||| || | | | |||||||| |||||||||||||||| Sbjct 798 TATGTAGAGATTGGAATGGG--GCAGATGGAGAGGTATGAAGAAGATTTTGAAAGCTTCA 855 Query 266 TGCTTCAAGATACTGCTTCTTACTATTTTAGCAAGGCGTCAAGGTGGAT-CGAGGAGGAT 324 |||||||||||||| |||| || |||| | ||||||| ||||| ||||| | |||| ||| Sbjct 856 TGCTTCAAGATACTTCTTCGTATTATTCTCGCAAGGCATCAAGCTGGATTC-AGGAAGAT 914 Query 325 TCTTGTCCTGATTACA 340 ||||| |||||||||| Sbjct 915 TCTTGCCCTGATTACA 930 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26021288146 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5