BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg338398

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G59800.1 | Symbols:  | Cullin family protein | chr1:22004964...   278    5e-74
  AT1G59790.1 | Symbols:  | Cullin family protein | chr1:22001504...   257    6e-68
  AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:112...   139    2e-32


> AT1G59800.1 | Symbols:  | Cullin family protein | chr1:22004964-22006172 
FORWARD LENGTH=768
Length=768

 Score =  278 bits (150),  Expect = 5e-74
 Identities = 188/206 (91%), Gaps = 4/206 (2%)
 Strand=Plus/Plus

Query  145  ATTCATAAAGAACGTGAAGGCGAACAAATTGATAGAGAACTAGTGAGAAACATAATAAAT  204
            ||||||||||||||||| || |||||||||||||||||||| ||||||||| ||||| ||
Sbjct  457  ATTCATAAAGAACGTGAGGGTGAACAAATTGATAGAGAACTTGTGAGAAACGTAATAGAT  516

Query  205  GTCTATGTTGAGAATGGGATGGGATC-CATAAAACAATATGAAGAGGATTTTGAAA-GCT  262
            |||| ||||||||||||||||||| | | ||||| ||||||||||||||||||||| || 
Sbjct  517  GTCTTTGTTGAGAATGGGATGGGAACTC-TAAAAAAATATGAAGAGGATTTTGAAAGGC-  574

Query  263  TCATGCTTCAAGATACTGCTTCTTACTATTTTAGCAAGGCGTCAAGGTGGATCGAGGAGG  322
            |||||||||||||||||||||||||||||| ||||||||| |||||||||||| | ||||
Sbjct  575  TCATGCTTCAAGATACTGCTTCTTACTATTCTAGCAAGGCATCAAGGTGGATCCAAGAGG  634

Query  323  ATTCTTGTCCTGATTACACGCTAAAG  348
            | ||||||| ||||||||||||||||
Sbjct  635  AGTCTTGTCTTGATTACACGCTAAAG  660


 Score =  132 bits (71),  Expect = 4e-30
 Identities = 77/80 (96%), Gaps = 0/80 (0%)
 Strand=Plus/Plus

Query  406  CCTCAAGAGTGTCTACAAAGGGAGAGGGAGAGAGTCACTCACTACCTTCATCCAACCACT  465
            |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  CCTCAACAGTGTTTACAAAGGGAGAGGGAGAGAGTCACTCACTACCTTCATCCAACCACT  720

Query  466  GAACCCAAACTATTTAAGGT  485
            ||||||||||||||| ||||
Sbjct  721  GAACCCAAACTATTTGAGGT  740


> AT1G59790.1 | Symbols:  | Cullin family protein | chr1:22001504-22003385 
FORWARD LENGTH=1125
Length=1125

 Score =  257 bits (139),  Expect = 6e-68
 Identities = 185/207 (89%), Gaps = 4/207 (2%)
 Strand=Plus/Plus

Query  145  ATTCATAAAGAACGTGAAGGCGAACAAATTGATAGAGAACTAGTG-AGAAACATAATAAA  203
            ||||||||||||||||| |||||||| || ||||| | ||||||| || ||| || || |
Sbjct  484  ATTCATAAAGAACGTGAGGGCGAACAGATAGATAGGGCACTAGTGAAG-AACGTATTAGA  542

Query  204  TGTCTATGTTGAGAATGGGATGGGATCCAT-AAAACAATATGAAGAGGATTTTGAAAGCT  262
            | ||||||| ||||||||||||||| || |  ||| ||||||||||||||||||||||||
Sbjct  543  TATCTATGTGGAGAATGGGATGGGAACCTTGGAAA-AATATGAAGAGGATTTTGAAAGCT  601

Query  263  TCATGCTTCAAGATACTGCTTCTTACTATTTTAGCAAGGCGTCAAGGTGGATCGAGGAGG  322
            |||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct  602  TCATGCTTCAAGATACTGCTTCTTACTATTCTCGCAAGGCGTCAAGGTGGACCGAGGAGG  661

Query  323  ATTCTTGTCCTGATTACACGCTAAAGG  349
            |||||||||||||||||| | ||||||
Sbjct  662  ATTCTTGTCCTGATTACATGATAAAGG  688


> AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:1128622-1133696 
FORWARD LENGTH=2747
Length=2747

 Score =  139 bits (75),  Expect = 2e-32
 Identities = 157/196 (80%), Gaps = 8/196 (4%)
 Strand=Plus/Plus

Query  149  ATAAAGAACGTGAAGGCGAACAAATTGATAGAGAACTAG-TGAGAAACATAATAAATGTC  207
            |||||||||| || ||||| || |||||||| |  || | ||| |||| || || || ||
Sbjct  739  ATAAAGAACGGGAGGGCGAGCAGATTGATAGGGCCCT-GCTGAAAAACGTATTAGATATC  797

Query  208  TATGTTGAGAATGGGATGGGATCCATA-AAACA-ATATGAAGAGGATTTTGAAAGCTTCA  265
            ||||| |||| ||| |||||   || |   | |  |||||||| ||||||||||||||||
Sbjct  798  TATGTAGAGATTGGAATGGG--GCAGATGGAGAGGTATGAAGAAGATTTTGAAAGCTTCA  855

Query  266  TGCTTCAAGATACTGCTTCTTACTATTTTAGCAAGGCGTCAAGGTGGAT-CGAGGAGGAT  324
            |||||||||||||| |||| || |||| | ||||||| ||||| ||||| | |||| |||
Sbjct  856  TGCTTCAAGATACTTCTTCGTATTATTCTCGCAAGGCATCAAGCTGGATTC-AGGAAGAT  914

Query  325  TCTTGTCCTGATTACA  340
            ||||| ||||||||||
Sbjct  915  TCTTGCCCTGATTACA  930



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26021288146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5