BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338401
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504... 326 2e-88
AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964... 171 9e-42
> AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504-22003385
FORWARD LENGTH=1125
Length=1125
Score = 326 bits (176), Expect = 2e-88
Identities = 330/401 (82%), Gaps = 23/401 (6%)
Strand=Plus/Plus
Query 17 AGATTACATTTGAGGAAGGATGGCT-TTACATACAGAAAGGTGTTACCAAGCTGATAAAG 75
|||||| |||||||||||||||| | |||| ||||||||| ||||||||||||||| |
Sbjct 32 AGATTAAATTTGAGGAAGGATGG-TCCAACATTCAGAAAGGTATTACCAAGCTGATAAGG 90
Query 76 ATTATAGAAGGAGAGCCTGAACCACCATTTGATGCTGAG-GAATATATGAATCTTTATAC 134
||| |||||||||||||||||||| ||||| || | || |||| | | || ||||| ||
Sbjct 91 ATTCTAGAAGGAGAGCCTGAACCAACATTTTAT-TTTAGTGAATGTTTTAAACTTTACAC 149
Query 135 GACTATCTACAAAATGTGCAG-CCA-CTCTCCTGGTTACTCAAAACAGCTTTATGAAAAG 192
|| ||||||| | ||||| | ||| ||| | ||| ||| | |||||||||||||||
Sbjct 150 GATTATCTACGATATGTG-TGTCCAGAGATCC-GATTATTCACAGCAGCTTTATGAAAAG 207
Query 193 TATCGTGAAGTAATTGAAGATTATACTATCCAAACGGTGTTGCCGTCGTTAAGAGAGAAG 252
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 208 TATCGTAAAGTAATTGAAGATTATACTATCCAAACGGTGTTGCCGTCTTTAAGGGAGAAG 267
Query 253 CATGATGAAGATATGCTAAGAGAGCTTGTTAAGAAGTGGGATAACCATAAAGTTCTGGTT 312
|||||||||||||||||||||||||||||||||| |||| ||||||||||| || ||||
Sbjct 268 CATGATGAAGATATGCTAAGAGAGCTTGTTAAGAGGTGGAATAACCATAAAATTATGGTC 327
Query 313 AGATGGTTATCCA-GATTCTTTC-TTGATGTTGACTGTTACTTAGCTCGTAG-AG---G- 365
| ||||||| || | ||||| | || || ||||| || |||| | |||| | || |
Sbjct 328 AAATGGTTAAGCAAG-TTCTT-CGTTTATATTGACCGTCACTTGGTTCGTCGGAGTAAGA 385
Query 366 --C-A-TTCCAAGACTGAGA-GAAGTTGGCTTGACATGCTT 401
| | ||||| ||| ||| |||||||| |||||||||||
Sbjct 386 TTCCAATTCCATCACT-AGATGAAGTTGGATTGACATGCTT 425
Score = 209 bits (113), Expect = 2e-53
Identities = 141/154 (92%), Gaps = 4/154 (3%)
Strand=Plus/Plus
Query 408 ACTGATTCATAAAGAGCGTGAGGGAGAACAGACT-GATAAGGCACTGGTGAAAAACATAT 466
||| ||||||||||| |||||||| ||||||| | |||| |||||| ||||| ||| |||
Sbjct 480 ACTTATTCATAAAGAACGTGAGGGCGAACAGA-TAGATAGGGCACTAGTGAAGAACGTAT 538
Query 467 TAGATATCTATGTAGAGAATGGGATGGGAA-CTATGGAAAAATATGAAGAGGATTTTGAA 525
||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 539 TAGATATCTATGTGGAGAATGGGATGGGAACCT-TGGAAAAATATGAAGAGGATTTTGAA 597
Query 526 AGATTCATGCTTCAAGATACTGCTTCTTACTATT 559
|| |||||||||||||||||||||||||||||||
Sbjct 598 AGCTTCATGCTTCAAGATACTGCTTCTTACTATT 631
> AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964-22006172
FORWARD LENGTH=768
Length=768
Score = 171 bits (92), Expect = 9e-42
Identities = 133/153 (87%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 408 ACTGATTCATAAAGAGCGTGAGGGAGAACAGACTGATAAG-GCACTGGTGAAAAACATAT 466
||| ||||||||||| |||||||| ||||| | |||| || | ||| |||| |||| ||
Sbjct 453 ACTTATTCATAAAGAACGTGAGGGTGAACAAATTGAT-AGAGAACTTGTGAGAAACGTAA 511
Query 467 TAGATATCTATGTAGAGAATGGGATGGGAACTATGGAAAAATATGAAGAGGATTTTGAAA 526
||||| ||| ||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 512 TAGATGTCTTTGTTGAGAATGGGATGGGAACTCTAAAAAAATATGAAGAGGATTTTGAAA 571
Query 527 GATTCATGCTTCAAGATACTGCTTCTTACTATT 559
| ||||||||||||||||||||||||||||||
Sbjct 572 GGCTCATGCTTCAAGATACTGCTTCTTACTATT 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26925502792
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5