BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338425
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58090.1 | Symbols: | F-box and associated interaction doma... 942 0.0
AT1G59630.1 | Symbols: | F-box associated ubiquitination effec... 558 3e-158
AT1G53325.1 | Symbols: | F-box associated ubiquitination effec... 483 2e-135
AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-... 303 2e-81
> AT1G58090.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:21510510-21511625 FORWARD LENGTH=1116
Length=1116
Score = 942 bits (510), Expect = 0.0
Identities = 897/1072 (84%), Gaps = 74/1072 (7%)
Strand=Plus/Plus
Query 1 ATGGTGGCGAGAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCATTCGTGTTCCACCT 60
|||||| ||| |||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1 ATGGTGTCGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCT 60
Query 61 CGATCTCTCGTTCGCTTCAGATCCGTTTGCAAAGAATGGAACACTCTTTTCCACAATAAG 120
||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct 61 CGATCTCTCGTTCGCTTCAGATCCGTTTGCAGAGAATGGAACACTCTTTTCAAGAATAAG 120
Query 121 AGATTCGCCGACAAAAACTTTGCTTGTGGTCGCCCAGAATTCATGTTAAAGACACATTCC 180
|||||| | |||||||||||||||| ||||| |||||| |||||||||| ||||||||
Sbjct 121 AGATTCATCAACAAAAACTTTGCTTGCGGTCGGCCAGAAATCATGTTAAATACACATTCA 180
Query 181 CATATTTATTCGATAAGCGTCAATCTCAATGAC---AATCCAACTGTAAAAGTGCGTGAT 237
||||||||||||||||||||| ||||||| ||| ||||||||| |||| |||||||||
Sbjct 181 CATATTTATTCGATAAGCGTCGATCTCAAAGACGAAAATCCAACTATAAAGGTGCGTGAT 240
Query 238 TTATGCTTTG---ATTTATGCGGTAGCCGTTATCAT-TACTATGGGAAT-TGCGATGGTT 292
||| |||||| ||||| | | || |||||||| | |||||| || |||||||||
Sbjct 241 TTACGCTTTGATCATTTAAGTTGCCGCGGTTATCATCT-GTATGGG-ATCTGCGATGGTA 298
Query 293 ACTTCTTCATGTATGA-C-TAC--GA-CGA--AGGAGGCGTGGTTTGGAACCCG-T-TTT 343
|||||||||||||| | | | | | || |||||||| |||||||||||| | |||
Sbjct 299 ACTTCTTCATGTAT-AGCTTTCTTAATGGAGGCGGAGGCGTTGTTTGGAACCCGTTGTTT 357
Query 344 T-GAGACAGACTAAAAGGATTGCCGCGGATGAGTCTTCATGTGGCAAAGAGATGGGTTAT 402
| ||||||||||||| |||||||| || |||| | |||||||||| | || |||||
Sbjct 358 TGGAGACAGACTAAATGGATTGCCAAGGCTGAGAATACATGTGGCAAGGCCATTGGTTAC 417
Query 403 GATGGTAGTAGACCCGAAAAGAGTTACAAGATTAT-----TG-G-A--CGTTC----CAG 449
||||||||||||||||||||||||||||||||||| | | | |||| |||
Sbjct 418 GATGGTAGTAGACCCGAAAAGAGTTACAAGATTATCGGAAGGAGTAGTTGTTCTTGGCAG 477
Query 450 TAGT-AA-TT-C-GATCCATAGAGTTGCAGTCTTCGAATTTGCAACCAATGCATGGGAA- 504
|| || || | ||| ||| | || ||||||||||||||||||||||||| | ||||
Sbjct 478 -GGTAAAGTTACTGATACAT--A-TT-CAGTCTTCGAATTTGCAACCAATGCGT-GGAAG 531
Query 505 GTTACTCATCGTACCAGTTTTGGCGAAGTGTTA-ACATCACA-CGACGACT-CGTCTACC 561
|||||| ||| |||| ||||| |||| | | | || | | ||||||| || ||
Sbjct 532 GTTACTGATCATACCCGTTTTCACGAAAAGCCAGA-ATTA-ATGGACGACTCCG-GTAGG 588
Query 562 GTCTCCCTGAATGGAAATGTGTACTGGACAGGTTATAAATATCCCGAAACTGGTCAGTAT 621
|||||||||||||||||| |||||||||||| |||||| | |||| | ||||||||||||
Sbjct 589 GTCTCCCTGAATGGAAATTTGTACTGGACAGCTTATAATTCTCCCCACACTGGTCAGTAT 648
Query 622 TTCATCGAAATGCTCGATTTTTCGAAAGAG---G--TA-A-T--AAAGATCTTTTGTGTT 672
||||||| |||||||||||||||||||||| | | | | ||||| ||||||||||
Sbjct 649 TTCATCGCAATGCTCGATTTTTCGAAAGAGATAGAAAAGAGTCGAAAGACCTTTTGTGTT 708
Query 673 TTACCGTGTAA-GGGGAAAAAATGTGCTTCCCATCA-TCGTATGCTCTCGATTTACAAGG 730
||||||||||| |||||||||| || || | ||| | |||||| ||||||||||||||||
Sbjct 709 TTACCGTGTAAGGGGGAAAAAA-GTACTACACAT-ACTCGTATCCTCTCGATTTACAAGG 766
Query 731 GAGATCGGTTTTCAGTGTTACAACAATGCACAAGAACAAGCGAGATTAAGATTTGGGTGA 790
|||||||||||||||||||| |||||| || || |||||| |||||| ||||||||||||
Sbjct 767 GAGATCGGTTTTCAGTGTTAGAACAATCCAAAAAAACAAGGGAGATTGAGATTTGGGTGA 826
Query 791 CAGAGAAGAAAATTGGTAACGGGGATGATGGAGACAATGTGGTGTGGATTAAGTTCATGA 850
|| || | |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 827 CAAAGGATCAAATTGGTAACGGGGATGATGGAGACGATGTGGTGTGGATTAAGTTCATGA 886
Query 851 CTGTCTCAAGACCTGACCTCCCCATGTTACTTAGT--CA-C---ACAAGTTACTTCGTCG 904
| ||||||||||||||| ||||||| ||||||||| || | ||||||||||| ||||
Sbjct 887 CAGTCTCAAGACCTGACTTCCCCATATTACTTAGTTACATCTCTACAAGTTACTTTGTCG 946
Query 905 ATGATAATATCTATGGGAAGAGCTTCGTTCTGTGTTG-CAATAGCAAGAAACCTAGA-CA 962
|| || ||||| ||||||||||||| ||||||||||| | |||||||| ||||| | ||
Sbjct 947 ATAATGATATCCATGGGAAGAGCTTTGTTCTGTGTTGTCC-TAGCAAGAGACCTAAAGCA 1005
Query 963 AGCTTGGGTCTATATTGTGAGGGGAGATATGTGCAAAAAGATTAAGATAGAT 1014
|||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1006 -GCTTGGGTGTATATTGTGAGGGGAGATTTGTGCAAAAAGATTAAGATAGAT 1056
> AT1G59630.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:21907177-21907955 REVERSE LENGTH=720
Length=720
Score = 558 bits (302), Expect = 3e-158
Identities = 394/437 (90%), Gaps = 12/437 (3%)
Strand=Plus/Plus
Query 593 GTTATAAATATCCCGAAACTGGTCAGTATTTCATCGAAATGCTCGATTTTTCGAAAGAGG 652
|||| ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 233 GTTACAAATATCCCGACACTGGTCAGTGTTTCATCGAAATGCTCGATCTTTCGAAAGAGG 292
Query 653 TAATAAAGATCTTTTGTGTTTTACCGTGTAAGGGGAA-AAAATGTGCTTCCCATCA-TCG 710
||||||||||||||||| | |||||||||||| ||| |||| || ||||| || | |||
Sbjct 293 TAATAAAGATCTTTTGTATCCTACCGTGTAAGGCGAATAAAA-GTACTTCCAAT-ACTCG 350
Query 711 TATGCTCTCGATTTACAAGGGAGATCGGTTTTCAGTGTTACAACAATGCACAAGAACAAG 770
||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 351 TATCCTCTCGATTTACAAGGGAGATCGGTTTTCAGTGTTACAACAAAGCAAAAGAACAGG 410
Query 771 CGAGATTAAGATTTGGGTGACAGAGAAGAAAATTGGTAACGGGGATGATGGAGACAATGT 830
|||||||| |||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 411 GGAGATTAACATTTGGGTGACAGAGAAGGAAATTGGTAACGGGGATAATGGAGACGATGT 470
Query 831 GGTGTGGATTAAGTTCATGACTGTCTCAAGACCTGACCTCCCCATGTTACTTAGT--CA- 887
||||||||| |||||||||||| |||||||||||||| ||||||| ||||||||| ||
Sbjct 471 GGTGTGGATGAAGTTCATGACTCTCTCAAGACCTGACTTCCCCATATTACTTAGTCACAT 530
Query 888 --C-ACAAGTTACTTCGTCGATGATAATATCTATGGGAAGAGCTTCGTTCTGTGTTG-CA 943
| ||||||||||| |||||| || |||||||||| |||||||| ||||||||||| |
Sbjct 531 CTCTACAAGTTACTTTGTCGATAATGATATCTATGGCAAGAGCTTGGTTCTGTGTTGTC- 589
Query 944 ATAGCAAGAAACCTAGACAAGCTTGGGTCTATATTGTGAGGGGAGATATGTGCAAAAAGA 1003
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 590 CTAGCACGAAACCTAGACAAGCTTGGGTCTATATTGTGAGGGGAGATCTGTGCAAAAAGA 649
Query 1004 TTAAGATAGATGGAGTG 1020
|||||||||||||||||
Sbjct 650 TTAAGATAGATGGAGTG 666
Score = 183 bits (99), Expect = 2e-45
Identities = 185/225 (82%), Gaps = 11/225 (5%)
Strand=Plus/Plus
Query 318 AGGAGGCGTGGTTTGGAACCCGTTTTTGAG-ACAGACTAAAAGGATTGCCG-CGGATGAG 375
||||||| |||||||||||||||| ||||| || ||||||| ||||| || |||| ||
Sbjct 18 AGGAGGCATGGTTTGGAACCCGTTGTTGAGAAC-GACTAAATTGATTG-CGAAGGATAAG 75
Query 376 TC--TTCATGTGGCAAAGAG-ATGGGTTATGATGGTAGTAGACCCGAAAAGAGTTACAAG 432
| | ||||||| ||||| |||||||| ||||||| || |||||||||||||||||||
Sbjct 76 -CAAAT-ATGTGGC-AAGAGCATGGGTTACGATGGTACTAAACCCGAAAAGAGTTACAAG 132
Query 433 ATTATTGGACGTTCCAGTAGTAATTCGATCCATAGAGTTGCAGTCTTCGAATTTGCAACC 492
||||||||||| | | || |||| ||||| |||||||||||||||| ||| ||||||||
Sbjct 133 ATTATTGGACGGTGCTTTACTAATGCGATCTATAGAGTTGCAGTCTTGGAACTTGCAACC 192
Query 493 AATGCATGGGAAGTTACTCATCGTACCAGTTTTGGCGAAGTGTTA 537
|| || ||| ||| ||||||| || |||| | | ||||| ||||
Sbjct 193 AACGCGTGG-AAGGTACTCATTGTCCCAGATCTCACGAAGAGTTA 236
> AT1G53325.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:19895227-19895733 REVERSE LENGTH=507
Length=507
Score = 483 bits (261), Expect = 2e-135
Identities = 394/457 (86%), Gaps = 14/457 (3%)
Strand=Plus/Plus
Query 572 ATGGAAATGTGTACTGGACAGGTTATAAATATCCCGAAACTGGTCAGTATTTCATCGAAA 631
|||||||| |||||||||||| |||| ||| | || |||||||||||||||||||| |||
Sbjct 1 ATGGAAATTTGTACTGGACAGCTTAT-AAT-T-CCAAAACTGGTCAGTATTTCATCCAAA 57
Query 632 T-GCTCGATTTTTCGAAAGAGGTAATAAAGATCTTTTGTGTTTTACCGTGTAAGGGGAA- 689
| |||||||||||| |||||| | ||||||| || ||| || |||| ||||||| |||
Sbjct 58 TGGCTCGATTTTTCCAAAGAGACATTAAAGATGTTCTGTATTCTACCATGTAAGGCGAAG 117
Query 690 AAAATGTGCTTCCCATCA-TCGTATGCTCTCGATTTACAAGGGAGATCGGTTTTCAGTGT 748
|||| || || | ||| | |||||| ||||| |||||||| ||||||||||||||||||
Sbjct 118 AAAA-GTACTACTCAT-ACTCGTATCCTCTCTATTTACAAAGGAGATCGGTTTTCAGTGA 175
Query 749 TACAACAATGCACAAGAACAAGCGAGATTAAGATTTGGGTGACAGAGAAGAAAATTGGTA 808
| ||||||||| ||||||||| |||||| |||||||||||||| |||| ||||||||||
Sbjct 176 TGGAACAATGCAAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGGTA 235
Query 809 ACGGGGATGATGGAGACAATGTGGTGTGGATTAAGTTCATGACTGTCTCAAGACCTGACC 868
| |||||||||||| || |||| |||||||||||||||||||||||||||| |||| ||
Sbjct 236 ATGGGGATGATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAATACCTAACT 295
Query 869 TCCCCATGTTACTTAGTC---A--C-ACAAGTTACTTCGTCGATGATAATATCTATGGGA 922
|||||||| ||||| ||| | | |||||||||||||||||||||| ||||| |||||
Sbjct 296 TCCCCATGGTACTTTGTCATAATTCTACAAGTTACTTCGTCGATGATAGTATCTCTGGGA 355
Query 923 AGAGCTTCGTTCTGTGTTGCAATAGCAAGAAACCTAGACAAGCTTGGGTCTATATTGTGA 982
||||||||||| | |||| || ||||||||||| |||||||||||||||||||||||
Sbjct 356 AGAGCTTCGTTTTATGTTTTTCTACCAAGAAACCTAAACAAGCTTGGGTCTATATTGTGA 415
Query 983 GGGGAGATATGTGCAAAAAGATTAAGATAGATGGAGT 1019
|||||||| |||||||||||||||||||||||| |||
Sbjct 416 GGGGAGATCTGTGCAAAAAGATTAAGATAGATGAAGT 452
> AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-14639934
FORWARD LENGTH=729
Length=729
Score = 303 bits (164), Expect = 2e-81
Identities = 285/340 (84%), Gaps = 21/340 (6%)
Strand=Plus/Plus
Query 1 ATGGTGGCGAGAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCATTCGTGTTCCACCT 60
|||||| ||| |||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1 ATGGTGCCGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCT 60
Query 61 CGATCTCTCG-TTCGCTTCAGATCCGTTTGCAAAGAATGGAACACTCTTTTCCACA-ATA 118
||||||||| || |||| |||||||||||||||||||||||| |||||| ||| | |||
Sbjct 61 CGATCTCTCCATT-GCTTTAGATCCGTTTGCAAAGAATGGAACGCTCTTT-CCAGAGATA 118
Query 119 AGAGATTCGCCGACAAAAACTTTGCTTGTGGTCGC-CCAGAATTCATGTTAAAGACACAT 177
||||||| | |||||||||||||||| | || | ||||||||||| |||||||||| |
Sbjct 119 AGAGATTAATCAACAAAAACTTTGCTTGCGCTC-CTCCAGAATTCATCTTAAAGACACGT 177
Query 178 TCCCATATTTATTCGATAAGCGTCAATCTCAA---TGACAATCCAACTGTAAAAGTGCGT 234
||| |||||||||||||||||||||||||||| ||||||||||||| |||| ||||||
Sbjct 178 TCCAATATTTATTCGATAAGCGTCAATCTCAACGATGACAATCCAACTATAAATGTGCGT 237
Query 235 GATTTATGCTTTGATTTATGCGGT-A-GCCGTTATCATTA-CT--ATGGGAATTGCGATG 289
|| |||||||||| | || | | | | || | |||| || |||||| |||||||
Sbjct 238 GACTTATGCTTTGGTG-AT-CATTTACGGGGTCAACATTCTCTCTATGGGACCTGCGATG 295
Query 290 GTTACTTCTTCATGTATGA-C--TA-CGACGAAGGAGGCG 325
|| |||||||| ||||||| | | | ||||||||||||
Sbjct 296 GTAACTTCTTCTTGTATGATCACTTTC-ACGAAGGAGGCG 334
Score = 67.6 bits (36), Expect = 2e-10
Identities = 39/40 (98%), Gaps = 1/40 (3%)
Strand=Plus/Plus
Query 401 ATG-ATGGTAGTAGACCCGAAAAGAGTTACAAGATTATTG 439
||| ||||||||||||||||||||||||||||||||||||
Sbjct 336 ATGCATGGTAGTAGACCCGAAAAGAGTTACAAGATTATTG 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5