BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg338425 Length=1101 Score E Sequences producing significant alignments: (Bits) Value AT1G58090.1 | Symbols: | F-box and associated interaction doma... 942 0.0 AT1G59630.1 | Symbols: | F-box associated ubiquitination effec... 558 3e-158 AT1G53325.1 | Symbols: | F-box associated ubiquitination effec... 483 2e-135 AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-... 303 2e-81 > AT1G58090.1 | Symbols: | F-box and associated interaction domains-containing protein | chr1:21510510-21511625 FORWARD LENGTH=1116 Length=1116 Score = 942 bits (510), Expect = 0.0 Identities = 897/1072 (84%), Gaps = 74/1072 (7%) Strand=Plus/Plus Query 1 ATGGTGGCGAGAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCATTCGTGTTCCACCT 60 |||||| ||| |||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 1 ATGGTGTCGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCT 60 Query 61 CGATCTCTCGTTCGCTTCAGATCCGTTTGCAAAGAATGGAACACTCTTTTCCACAATAAG 120 ||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| Sbjct 61 CGATCTCTCGTTCGCTTCAGATCCGTTTGCAGAGAATGGAACACTCTTTTCAAGAATAAG 120 Query 121 AGATTCGCCGACAAAAACTTTGCTTGTGGTCGCCCAGAATTCATGTTAAAGACACATTCC 180 |||||| | |||||||||||||||| ||||| |||||| |||||||||| |||||||| Sbjct 121 AGATTCATCAACAAAAACTTTGCTTGCGGTCGGCCAGAAATCATGTTAAATACACATTCA 180 Query 181 CATATTTATTCGATAAGCGTCAATCTCAATGAC---AATCCAACTGTAAAAGTGCGTGAT 237 ||||||||||||||||||||| ||||||| ||| ||||||||| |||| ||||||||| Sbjct 181 CATATTTATTCGATAAGCGTCGATCTCAAAGACGAAAATCCAACTATAAAGGTGCGTGAT 240 Query 238 TTATGCTTTG---ATTTATGCGGTAGCCGTTATCAT-TACTATGGGAAT-TGCGATGGTT 292 ||| |||||| ||||| | | || |||||||| | |||||| || ||||||||| Sbjct 241 TTACGCTTTGATCATTTAAGTTGCCGCGGTTATCATCT-GTATGGG-ATCTGCGATGGTA 298 Query 293 ACTTCTTCATGTATGA-C-TAC--GA-CGA--AGGAGGCGTGGTTTGGAACCCG-T-TTT 343 |||||||||||||| | | | | | || |||||||| |||||||||||| | ||| Sbjct 299 ACTTCTTCATGTAT-AGCTTTCTTAATGGAGGCGGAGGCGTTGTTTGGAACCCGTTGTTT 357 Query 344 T-GAGACAGACTAAAAGGATTGCCGCGGATGAGTCTTCATGTGGCAAAGAGATGGGTTAT 402 | ||||||||||||| |||||||| || |||| | |||||||||| | || ||||| Sbjct 358 TGGAGACAGACTAAATGGATTGCCAAGGCTGAGAATACATGTGGCAAGGCCATTGGTTAC 417 Query 403 GATGGTAGTAGACCCGAAAAGAGTTACAAGATTAT-----TG-G-A--CGTTC----CAG 449 ||||||||||||||||||||||||||||||||||| | | | |||| ||| Sbjct 418 GATGGTAGTAGACCCGAAAAGAGTTACAAGATTATCGGAAGGAGTAGTTGTTCTTGGCAG 477 Query 450 TAGT-AA-TT-C-GATCCATAGAGTTGCAGTCTTCGAATTTGCAACCAATGCATGGGAA- 504 || || || | ||| ||| | || ||||||||||||||||||||||||| | |||| Sbjct 478 -GGTAAAGTTACTGATACAT--A-TT-CAGTCTTCGAATTTGCAACCAATGCGT-GGAAG 531 Query 505 GTTACTCATCGTACCAGTTTTGGCGAAGTGTTA-ACATCACA-CGACGACT-CGTCTACC 561 |||||| ||| |||| ||||| |||| | | | || | | ||||||| || || Sbjct 532 GTTACTGATCATACCCGTTTTCACGAAAAGCCAGA-ATTA-ATGGACGACTCCG-GTAGG 588 Query 562 GTCTCCCTGAATGGAAATGTGTACTGGACAGGTTATAAATATCCCGAAACTGGTCAGTAT 621 |||||||||||||||||| |||||||||||| |||||| | |||| | |||||||||||| Sbjct 589 GTCTCCCTGAATGGAAATTTGTACTGGACAGCTTATAATTCTCCCCACACTGGTCAGTAT 648 Query 622 TTCATCGAAATGCTCGATTTTTCGAAAGAG---G--TA-A-T--AAAGATCTTTTGTGTT 672 ||||||| |||||||||||||||||||||| | | | | ||||| |||||||||| Sbjct 649 TTCATCGCAATGCTCGATTTTTCGAAAGAGATAGAAAAGAGTCGAAAGACCTTTTGTGTT 708 Query 673 TTACCGTGTAA-GGGGAAAAAATGTGCTTCCCATCA-TCGTATGCTCTCGATTTACAAGG 730 ||||||||||| |||||||||| || || | ||| | |||||| |||||||||||||||| Sbjct 709 TTACCGTGTAAGGGGGAAAAAA-GTACTACACAT-ACTCGTATCCTCTCGATTTACAAGG 766 Query 731 GAGATCGGTTTTCAGTGTTACAACAATGCACAAGAACAAGCGAGATTAAGATTTGGGTGA 790 |||||||||||||||||||| |||||| || || |||||| |||||| |||||||||||| Sbjct 767 GAGATCGGTTTTCAGTGTTAGAACAATCCAAAAAAACAAGGGAGATTGAGATTTGGGTGA 826 Query 791 CAGAGAAGAAAATTGGTAACGGGGATGATGGAGACAATGTGGTGTGGATTAAGTTCATGA 850 || || | |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 827 CAAAGGATCAAATTGGTAACGGGGATGATGGAGACGATGTGGTGTGGATTAAGTTCATGA 886 Query 851 CTGTCTCAAGACCTGACCTCCCCATGTTACTTAGT--CA-C---ACAAGTTACTTCGTCG 904 | ||||||||||||||| ||||||| ||||||||| || | ||||||||||| |||| Sbjct 887 CAGTCTCAAGACCTGACTTCCCCATATTACTTAGTTACATCTCTACAAGTTACTTTGTCG 946 Query 905 ATGATAATATCTATGGGAAGAGCTTCGTTCTGTGTTG-CAATAGCAAGAAACCTAGA-CA 962 || || ||||| ||||||||||||| ||||||||||| | |||||||| ||||| | || Sbjct 947 ATAATGATATCCATGGGAAGAGCTTTGTTCTGTGTTGTCC-TAGCAAGAGACCTAAAGCA 1005 Query 963 AGCTTGGGTCTATATTGTGAGGGGAGATATGTGCAAAAAGATTAAGATAGAT 1014 |||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 1006 -GCTTGGGTGTATATTGTGAGGGGAGATTTGTGCAAAAAGATTAAGATAGAT 1056 > AT1G59630.1 | Symbols: | F-box associated ubiquitination effector family protein | chr1:21907177-21907955 REVERSE LENGTH=720 Length=720 Score = 558 bits (302), Expect = 3e-158 Identities = 394/437 (90%), Gaps = 12/437 (3%) Strand=Plus/Plus Query 593 GTTATAAATATCCCGAAACTGGTCAGTATTTCATCGAAATGCTCGATTTTTCGAAAGAGG 652 |||| ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 233 GTTACAAATATCCCGACACTGGTCAGTGTTTCATCGAAATGCTCGATCTTTCGAAAGAGG 292 Query 653 TAATAAAGATCTTTTGTGTTTTACCGTGTAAGGGGAA-AAAATGTGCTTCCCATCA-TCG 710 ||||||||||||||||| | |||||||||||| ||| |||| || ||||| || | ||| Sbjct 293 TAATAAAGATCTTTTGTATCCTACCGTGTAAGGCGAATAAAA-GTACTTCCAAT-ACTCG 350 Query 711 TATGCTCTCGATTTACAAGGGAGATCGGTTTTCAGTGTTACAACAATGCACAAGAACAAG 770 ||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | Sbjct 351 TATCCTCTCGATTTACAAGGGAGATCGGTTTTCAGTGTTACAACAAAGCAAAAGAACAGG 410 Query 771 CGAGATTAAGATTTGGGTGACAGAGAAGAAAATTGGTAACGGGGATGATGGAGACAATGT 830 |||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |||| Sbjct 411 GGAGATTAACATTTGGGTGACAGAGAAGGAAATTGGTAACGGGGATAATGGAGACGATGT 470 Query 831 GGTGTGGATTAAGTTCATGACTGTCTCAAGACCTGACCTCCCCATGTTACTTAGT--CA- 887 ||||||||| |||||||||||| |||||||||||||| ||||||| ||||||||| || Sbjct 471 GGTGTGGATGAAGTTCATGACTCTCTCAAGACCTGACTTCCCCATATTACTTAGTCACAT 530 Query 888 --C-ACAAGTTACTTCGTCGATGATAATATCTATGGGAAGAGCTTCGTTCTGTGTTG-CA 943 | ||||||||||| |||||| || |||||||||| |||||||| ||||||||||| | Sbjct 531 CTCTACAAGTTACTTTGTCGATAATGATATCTATGGCAAGAGCTTGGTTCTGTGTTGTC- 589 Query 944 ATAGCAAGAAACCTAGACAAGCTTGGGTCTATATTGTGAGGGGAGATATGTGCAAAAAGA 1003 ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 590 CTAGCACGAAACCTAGACAAGCTTGGGTCTATATTGTGAGGGGAGATCTGTGCAAAAAGA 649 Query 1004 TTAAGATAGATGGAGTG 1020 ||||||||||||||||| Sbjct 650 TTAAGATAGATGGAGTG 666 Score = 183 bits (99), Expect = 2e-45 Identities = 185/225 (82%), Gaps = 11/225 (5%) Strand=Plus/Plus Query 318 AGGAGGCGTGGTTTGGAACCCGTTTTTGAG-ACAGACTAAAAGGATTGCCG-CGGATGAG 375 ||||||| |||||||||||||||| ||||| || ||||||| ||||| || |||| || Sbjct 18 AGGAGGCATGGTTTGGAACCCGTTGTTGAGAAC-GACTAAATTGATTG-CGAAGGATAAG 75 Query 376 TC--TTCATGTGGCAAAGAG-ATGGGTTATGATGGTAGTAGACCCGAAAAGAGTTACAAG 432 | | ||||||| ||||| |||||||| ||||||| || ||||||||||||||||||| Sbjct 76 -CAAAT-ATGTGGC-AAGAGCATGGGTTACGATGGTACTAAACCCGAAAAGAGTTACAAG 132 Query 433 ATTATTGGACGTTCCAGTAGTAATTCGATCCATAGAGTTGCAGTCTTCGAATTTGCAACC 492 ||||||||||| | | || |||| ||||| |||||||||||||||| ||| |||||||| Sbjct 133 ATTATTGGACGGTGCTTTACTAATGCGATCTATAGAGTTGCAGTCTTGGAACTTGCAACC 192 Query 493 AATGCATGGGAAGTTACTCATCGTACCAGTTTTGGCGAAGTGTTA 537 || || ||| ||| ||||||| || |||| | | ||||| |||| Sbjct 193 AACGCGTGG-AAGGTACTCATTGTCCCAGATCTCACGAAGAGTTA 236 > AT1G53325.1 | Symbols: | F-box associated ubiquitination effector family protein | chr1:19895227-19895733 REVERSE LENGTH=507 Length=507 Score = 483 bits (261), Expect = 2e-135 Identities = 394/457 (86%), Gaps = 14/457 (3%) Strand=Plus/Plus Query 572 ATGGAAATGTGTACTGGACAGGTTATAAATATCCCGAAACTGGTCAGTATTTCATCGAAA 631 |||||||| |||||||||||| |||| ||| | || |||||||||||||||||||| ||| Sbjct 1 ATGGAAATTTGTACTGGACAGCTTAT-AAT-T-CCAAAACTGGTCAGTATTTCATCCAAA 57 Query 632 T-GCTCGATTTTTCGAAAGAGGTAATAAAGATCTTTTGTGTTTTACCGTGTAAGGGGAA- 689 | |||||||||||| |||||| | ||||||| || ||| || |||| ||||||| ||| Sbjct 58 TGGCTCGATTTTTCCAAAGAGACATTAAAGATGTTCTGTATTCTACCATGTAAGGCGAAG 117 Query 690 AAAATGTGCTTCCCATCA-TCGTATGCTCTCGATTTACAAGGGAGATCGGTTTTCAGTGT 748 |||| || || | ||| | |||||| ||||| |||||||| |||||||||||||||||| Sbjct 118 AAAA-GTACTACTCAT-ACTCGTATCCTCTCTATTTACAAAGGAGATCGGTTTTCAGTGA 175 Query 749 TACAACAATGCACAAGAACAAGCGAGATTAAGATTTGGGTGACAGAGAAGAAAATTGGTA 808 | ||||||||| ||||||||| |||||| |||||||||||||| |||| |||||||||| Sbjct 176 TGGAACAATGCAAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGGTA 235 Query 809 ACGGGGATGATGGAGACAATGTGGTGTGGATTAAGTTCATGACTGTCTCAAGACCTGACC 868 | |||||||||||| || |||| |||||||||||||||||||||||||||| |||| || Sbjct 236 ATGGGGATGATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAATACCTAACT 295 Query 869 TCCCCATGTTACTTAGTC---A--C-ACAAGTTACTTCGTCGATGATAATATCTATGGGA 922 |||||||| ||||| ||| | | |||||||||||||||||||||| ||||| ||||| Sbjct 296 TCCCCATGGTACTTTGTCATAATTCTACAAGTTACTTCGTCGATGATAGTATCTCTGGGA 355 Query 923 AGAGCTTCGTTCTGTGTTGCAATAGCAAGAAACCTAGACAAGCTTGGGTCTATATTGTGA 982 ||||||||||| | |||| || ||||||||||| ||||||||||||||||||||||| Sbjct 356 AGAGCTTCGTTTTATGTTTTTCTACCAAGAAACCTAAACAAGCTTGGGTCTATATTGTGA 415 Query 983 GGGGAGATATGTGCAAAAAGATTAAGATAGATGGAGT 1019 |||||||| |||||||||||||||||||||||| ||| Sbjct 416 GGGGAGATCTGTGCAAAAAGATTAAGATAGATGAAGT 452 > AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-14639934 FORWARD LENGTH=729 Length=729 Score = 303 bits (164), Expect = 2e-81 Identities = 285/340 (84%), Gaps = 21/340 (6%) Strand=Plus/Plus Query 1 ATGGTGGCGAGAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCATTCGTGTTCCACCT 60 |||||| ||| |||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 1 ATGGTGCCGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCT 60 Query 61 CGATCTCTCG-TTCGCTTCAGATCCGTTTGCAAAGAATGGAACACTCTTTTCCACA-ATA 118 ||||||||| || |||| |||||||||||||||||||||||| |||||| ||| | ||| Sbjct 61 CGATCTCTCCATT-GCTTTAGATCCGTTTGCAAAGAATGGAACGCTCTTT-CCAGAGATA 118 Query 119 AGAGATTCGCCGACAAAAACTTTGCTTGTGGTCGC-CCAGAATTCATGTTAAAGACACAT 177 ||||||| | |||||||||||||||| | || | ||||||||||| |||||||||| | Sbjct 119 AGAGATTAATCAACAAAAACTTTGCTTGCGCTC-CTCCAGAATTCATCTTAAAGACACGT 177 Query 178 TCCCATATTTATTCGATAAGCGTCAATCTCAA---TGACAATCCAACTGTAAAAGTGCGT 234 ||| |||||||||||||||||||||||||||| ||||||||||||| |||| |||||| Sbjct 178 TCCAATATTTATTCGATAAGCGTCAATCTCAACGATGACAATCCAACTATAAATGTGCGT 237 Query 235 GATTTATGCTTTGATTTATGCGGT-A-GCCGTTATCATTA-CT--ATGGGAATTGCGATG 289 || |||||||||| | || | | | | || | |||| || |||||| ||||||| Sbjct 238 GACTTATGCTTTGGTG-AT-CATTTACGGGGTCAACATTCTCTCTATGGGACCTGCGATG 295 Query 290 GTTACTTCTTCATGTATGA-C--TA-CGACGAAGGAGGCG 325 || |||||||| ||||||| | | | |||||||||||| Sbjct 296 GTAACTTCTTCTTGTATGATCACTTTC-ACGAAGGAGGCG 334 Score = 67.6 bits (36), Expect = 2e-10 Identities = 39/40 (98%), Gaps = 1/40 (3%) Strand=Plus/Plus Query 401 ATG-ATGGTAGTAGACCCGAAAAGAGTTACAAGATTATTG 439 ||| |||||||||||||||||||||||||||||||||||| Sbjct 336 ATGCATGGTAGTAGACCCGAAAAGAGTTACAAGATTATTG 375 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53965585875 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5