BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338432
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59560.1 | Symbols: ZCF61, DAL2 | E3 Ubiquitin ligase family... 1088 0.0
> AT1G59560.1 | Symbols: ZCF61, DAL2 | E3 Ubiquitin ligase family
protein | chr1:21881599-21883792 FORWARD LENGTH=1319
Length=1319
Score = 1088 bits (589), Expect = 0.0
Identities = 735/805 (91%), Gaps = 12/805 (1%)
Strand=Plus/Plus
Query 1 ATGATACATTTGGCTGGATTTACGTGTTGTTTAGGCGGCATCGCTCTTTATCTTCTCAGC 60
||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| | |
Sbjct 143 ATGATACATTTGGCTGGATTTACATGTTGCTTAGGCGGCGTCGCTCTTTATCTTCTTA-C 201
Query 61 C-GGAACACAGGCGGAGTTGTCAAATCAATCACTAGGGTTAACCACCTCAAGGATTTGGA 119
| ||| ||||||| ||| | |||||||||||||||||||| |||| ||||||||||||||
Sbjct 202 CAGGAGCACAGGCAGAGATATCAAATCAATCACTAGGGTTTACCAACTCAAGGATTTGGA 261
Query 120 ACAA-T--T-G--GTAGAGAGCAAGGTGTTTCCTTTGATCATAGCAGTATCAGGA-ATTG 172
|||| | | | ||||||||||||||| | ||||||||||| |||||||||||| | ||
Sbjct 262 ACAATTAGTAGAAGTAGAGAGCAAGGTGGTACCTTTGATCATCGCAGTATCAGGAGA-TG 320
Query 173 TCGGCTCTGAGACACCTATCAAGTGTGAGCATAGTGACATACTCGGTGTTTTTCTCAAGA 232
| ||||||||||| ||||| ||||||||||||||| | | |||||||| ||||||||||
Sbjct 321 TTGGCTCTGAGACTCCTATTAAGTGTGAGCATAGTTATGTTCTCGGTGTATTTCTCAAGA 380
Query 233 AAACGGCAGAACAACAGGTTTTGAGTCGTAATTGGAGGTTCTCGTGGGTTCGAAAGAGTA 292
|||||||||||||||||||||||| ||||||||||| || || ||||||||||| ||||
Sbjct 381 GAACGGCAGAACAACAGGTTTTGAGACGTAATTGGAGATTTTCATGGGTTCGAAATAGTA 440
Query 293 CATTGATGCAGCCGATGACTAAGGAAGTCCCGTGGTTTCTGGACGATGGGACAGGTCGTG 352
||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||
Sbjct 441 CATTGATGCAGCCGATGACTAAGGAAGTCCCCTGGTATCTGGACGACGGGACAGGTCGTG 500
Query 353 TGAATGTAGCGGTATCTCAAGGTGAAATAGGCTTGGCGTTGACGGTTGGAAGTGATGTAT 412
||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 501 TGAATGTAGATGTATCTCAAGGTGAATTAGGCTTGGCGTTGACGGTTGGTAGTGATGTAT 560
Query 413 TTGAAAAGGCAGAGCCGGTTTCGCTTGTTCAAGGAACCTTGGATTATCTTAAAGGCCTCA 472
||||||||||||||||||| ||||||||||||||| | |||| ||||||||||||| | |
Sbjct 561 TTGAAAAGGCAGAGCCGGTATCGCTTGTTCAAGGAGCGTTGGGTTATCTTAAAGGCTTTA 620
Query 473 AGATACTTGGAGTAAGACGCGTTGAGCATGTTGTCCCAATTGGTACACCGCTTACAATTG 532
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 621 AGATACTTGGAGTAAGACACGTTGAGCGTGTTGTCCCAATTGGTACACCGCTTACAGTTG 680
Query 533 TTGGTGAGGCTGTTAAGGATGGCATGGGGAATGTCAGGATTCAAAAACCTGAGCAAGGAC 592
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TTGGTGAGGCTGTTAGGGATGGCATGGGGAATGTCAGGATTCAAAAACCTGAGCAAGGAC 740
Query 593 CTTTCTACGTGTCTTATGTACCGCTCGATCAACTCATCTCTAAATTGGGAGAATGGTCAA 652
|||||||||| ||||| ||||||| ||||| |||||||||||||||||||| | |||||
Sbjct 741 CTTTCTACGTCACTTATATACCGCTAGATCAGCTCATCTCTAAATTGGGAGATTTGTCAA 800
Query 653 GGAGGTTCAAGTATGCCTCCATGGGCTTAACTGTTCTTGGTGTGATTCTTCTTTCAAAGC 712
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 801 GGAGGTTCAAGTATGCCTCCATGGGTTTAACTGTTCTTGGTGTGATTCTTATTTCAAAGC 860
Query 713 CTGTGATTAAATATATTCTAAAGAAAATTGAAGATACTCTAGAGAGAAGGCGGCGACAAT 772
|||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 861 CTGTGATTGAATATATTCTAAAGAGAATTGAAGATACTCTAGAAAGAAGGCGGCGACAAT 920
Query 773 T-GTTACAGAAAAGAGTTGTTGATG 796
| | || |||||||||||||||||
Sbjct 921 TCGC-ACTGAAAAGAGTTGTTGATG 944
Score = 211 bits (114), Expect = 9e-54
Identities = 152/171 (89%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 784 AGAGTTGTTGATGTACCTGATCTCTGCGTGATCTGCCATGACCAGAAGTATAACACCGCT 843
|||| || |||| |||||||||||| ||| | |||| ||||||||||||||||||||||
Sbjct 989 AGAGATGGTGATACACCTGATCTCTGTGTGGTTTGCCTTGACCAGAAGTATAACACCGCT 1048
Query 844 TTTGTTCAGTGTGGTCATATGTGTTGCTGCTTAACATGCTCCTTGCGATTGACGACCTGT 903
|||||| |||||||||||||||| |||||| | |||||||||||| | | | |||||||
Sbjct 1049 TTTGTTGAGTGTGGTCATATGTGCTGCTGCACACCATGCTCCTTGCAACTAAGGACCTGT 1108
Query 904 CCTCTTTGCCGGGAACGAATACAACTAGTTTTGAAGATTTACCGCCATTGA 954
||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1109 CCTCTTTGCCGGGAACGAATACAACAAGTTTTGAAAATTTACCGCCATTGA 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5