BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg338454 Length=816 Score E Sequences producing significant alignments: (Bits) Value AT5G28160.1 | Symbols: | Galactose oxidase/kelch repeat superf... 281 6e-75 AT5G28180.1 | Symbols: | Galactose oxidase/kelch repeat superf... 268 5e-71 AT4G39060.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 108 1e-22 AT4G39753.1 | Symbols: | Galactose oxidase/kelch repeat superf... 99.0 6e-20 AT4G19330.1 | Symbols: | Galactose oxidase/kelch repeat superf... 71.3 1e-11 AT4G19250.1 | Symbols: | Galactose oxidase/kelch repeat superf... 71.3 1e-11 > AT5G28160.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:10137926-10139013 FORWARD LENGTH=975 Length=975 Score = 281 bits (152), Expect = 6e-75 Identities = 326/407 (80%), Gaps = 24/407 (6%) Strand=Plus/Plus Query 36 TCCATCATTTTTGTCACTTCCTGAAGAAATCATCTTGACCTGTTTAGCCCGCATACCGAG 95 |||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||| |||| Sbjct 21 TCCATCGTTTTTGTCACTACCTGATGAAATCATCTTGAGCTGTTTAGCCCGCATATCGAG 80 Query 96 ATCGTACTATCCGAAACTCTCCCTAGTCTGCAAGACCTTTCGCTCTCTCATCGTATCAAA 155 ||||||||||||||||||||||||||| ||||||||||| ||| ||||| || |||| || Sbjct 81 ATCGTACTATCCGAAACTCTCCCTAGTTTGCAAGACCTTCCGCACTCTCCTCATATCTAA 140 Query 156 AGAGCTCAACGACGCCCGATTTCACCTTAAAACACAAGAAACCGTGTATCAAGTCTGTCT 215 ||||||| | || ||||| ||||| ||||| || |||||| | | ||| ||||| || Sbjct 141 TGAGCTCATTGTGGCGCGATTGCACCTCAAAACCCATGAAACCTTTTGTCATGTCTG-CT 199 Query 216 -ACAGTTTACC-GATAATCCTCATCCCTCT-TGGTACACCCTCTGGATAAAACCTGGT-C 271 | ||||| || ||||| ||| |||| || || | |||||||||||||||||||||| | Sbjct 200 TAAAGTTT-CCTGATAAACCTAATCCGTCAATGTT-CACCCTCTGGATAAAACCTGGTAC 257 Query 272 AAATCCTAACCAACCAACTCGAGGAGAAGACGAAGTCTA-ACCATATTATTCGGTTGGTA 330 || || ||||||||||||| ||| |||| | || ||||| | | || | |||||||||| Sbjct 258 AA-TCTTAACCAACCAACTTGAGAAGAACAAGAGGTCTACAAGAGAT-ACTCGGTTGGTA 315 Query 331 -A----C-TTCTTCTTGTTACTCTTATGTACCATT--ACGCATAGTT-TCCGTTGGTTCA 381 | | |||||| | ||| | | ||||||| || || | | ||| | |||||||| Sbjct 316 CAAATACCTTCTTCATATTATTATAATGTACCGTTTTAC-C-TCGTTATG-GTTGGTTCC 372 Query 382 GAAATGTACGGAATCAGCCGATC-CAGTGCTCCGTCCTCGAACATGT 427 ||| | |||||| |||||| | | || || ||||||||| ||||||| Sbjct 373 GAAGTATACGGACTCAGCCAA-CGCAATGATCCGTCCTCCAACATGT 418 > AT5G28180.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:10162783-10163943 FORWARD LENGTH=1059 Length=1059 Score = 268 bits (145), Expect = 5e-71 Identities = 320/401 (80%), Gaps = 26/401 (6%) Strand=Plus/Plus Query 43 TTTTTGTCACTTCCTGAAGAAATCATCTTGACCTGTTTAGCCCGCATACCGAGATCGTAC 102 |||||||| || ||||| |||||| |||||| |||||||||||||||| ||||||||||| Sbjct 109 TTTTTGTCGCTCCCTGATGAAATCGTCTTGAACTGTTTAGCCCGCATATCGAGATCGTAC 168 Query 103 TATCCGAAACTCTCCCTAGTCTGCAAGACCTTTCGCTCTCTCATCGTATCAAAAGAGCTC 162 |||||||||||||||||||||||||||||||| ||| ||||| || |||| || |||||| Sbjct 169 TATCCGAAACTCTCCCTAGTCTGCAAGACCTTCCGCACTCTCCTCATATCTAACGAGCTC 228 Query 163 AACGACGCCCGATTTCACCTTAAAACACAA-GAAACCGTGTATCAAGTCTGTCT-ACAGT 220 | || || ||| | || |||||||| | | |||| | | ||| ||||| || | ||| Sbjct 229 ACCGTGGCGCGAGTGCAACTTAAAAC-CTACGAAAGTTTTTTTCATGTCTG-CTTAAAGT 286 Query 221 TTACC-GATAATCCTCATCCCTCT-TGGTACACCCTCTGGATAAAACCTGGTCAAATCCT 278 || || ||||| ||| |||| || || | |||||||||||||||||||||||||||| | Sbjct 287 TT-CCTGATAAACCTAATCCATCAATGTT-CACCCTCTGGATAAAACCTGGTCAAATCTT 344 Query 279 AACCAACCAACTCGAGGAGAA-GACGAAGTCTA-ACCATATTATTCGGTTGGTA-A---- 331 |||||||||||| ||| |||| || || ||||| | | | | |||||||||| | Sbjct 345 AACCAACCAACTTGAGAAGAACGA-GAGGTCTACAGGAGCT-ACTCGGTTGGTACAAATA 402 Query 332 C-TTCTTCTTGTTACTCTTAT-GTACCA--TTACGCATAGTTTCCGTTGGTTCAGAAATG 387 | |||||| | || ||| || |||||| |||| | || |||| |||||||| ||| | Sbjct 403 CCTTCTTCATATTGTTCT-ATTGTACCACATTAC-C-TAATTTCTGTTGGTTCCGAAGTA 459 Query 388 TACGGAATCAGCCGATC-CAGTGCTCCGTCCTCGAACATGT 427 |||||| |||||| | | || || ||||||||| ||||||| Sbjct 460 TACGGACTCAGCCAA-CACAATGATCCGTCCTCCAACATGT 499 > AT4G39060.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G19250.1); Has 375 Blast hits to 365 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 367; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr4:18202607-18204634 FORWARD LENGTH=1107 Length=1107 Score = 108 bits (58), Expect = 1e-22 Identities = 69/74 (93%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 483 TGATGAATCCGTGAATTGGGCTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAACCTTT 542 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 431 TGATGAATCAACGAATTGGGCTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAACCTTT 490 Query 543 AC-GTGACCCTGGC 555 || | ||||||||| Sbjct 491 ACCG-GACCCTGGC 503 > AT4G39753.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:18440112-18441445 FORWARD LENGTH=1334 Length=1334 Score = 99.0 bits (53), Expect = 6e-20 Identities = 146/190 (77%), Gaps = 10/190 (5%) Strand=Plus/Plus Query 445 GTCCTCAATGGGAAAATATATG-CACTCGGAGGCGGTGCTG--A-TGAATCCGTGAATTG 500 ||| || || |||||||||||| | | ||||| |||| | | ||||||| ||||| Sbjct 578 GTCTTCGATAGGAAAATATATGTTA-TGGGAGGTTGTGCGGAAACCGAATCCGCAAATTG 636 Query 501 GGCTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAACCTTTACGTGACCCTGGCGCAGA 560 || ||||||||| || |||||||||||||||||||||||||||| || |||| | | || Sbjct 637 GGGTGAGGTTTTTGATCCAAAGACTCAAACTTGGGAACCTTTACCTGTCCCTTCCCCTGA 696 Query 561 ACACTGCTTTTCTTCAAT--T-AGAGAAATACAGGTG-TGCGAAGGAAACATTAACGTTA 616 | | |||| |||||||| | ||| ||||| || || | | ||||||| || |||| | Sbjct 697 GCTCCGCTTCTCTTCAATGATTAGAAAAATAGAGATGATCC-AAGGAAAGTTTTACGTGA 755 Query 617 TAAGCAATGA 626 |||||||| Sbjct 756 GGAGCAATGA 765 > AT4G19330.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:10554982-10558675 FORWARD LENGTH=1614 Length=1614 Score = 71.3 bits (38), Expect = 1e-11 Identities = 40/41 (98%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 497 ATTGGGCTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAA 537 |||||||||| |||||||||||||||||||||||||||||| Sbjct 1055 ATTGGGCTGAAGTTTTCGACCCAAAGACTCAAACTTGGGAA 1095 > AT4G19250.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:10531504-10532190 FORWARD LENGTH=687 Length=687 Score = 71.3 bits (38), Expect = 1e-11 Identities = 40/41 (98%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 497 ATTGGGCTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAA 537 |||||||||| |||||||||||||||||||||||||||||| Sbjct 155 ATTGGGCTGAAGTTTTCGACCCAAAGACTCAAACTTGGGAA 195 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39735210277 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5