BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338454
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28160.1 | Symbols: | Galactose oxidase/kelch repeat superf... 281 6e-75
AT5G28180.1 | Symbols: | Galactose oxidase/kelch repeat superf... 268 5e-71
AT4G39060.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 108 1e-22
AT4G39753.1 | Symbols: | Galactose oxidase/kelch repeat superf... 99.0 6e-20
AT4G19330.1 | Symbols: | Galactose oxidase/kelch repeat superf... 71.3 1e-11
AT4G19250.1 | Symbols: | Galactose oxidase/kelch repeat superf... 71.3 1e-11
> AT5G28160.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:10137926-10139013 FORWARD LENGTH=975
Length=975
Score = 281 bits (152), Expect = 6e-75
Identities = 326/407 (80%), Gaps = 24/407 (6%)
Strand=Plus/Plus
Query 36 TCCATCATTTTTGTCACTTCCTGAAGAAATCATCTTGACCTGTTTAGCCCGCATACCGAG 95
|||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 21 TCCATCGTTTTTGTCACTACCTGATGAAATCATCTTGAGCTGTTTAGCCCGCATATCGAG 80
Query 96 ATCGTACTATCCGAAACTCTCCCTAGTCTGCAAGACCTTTCGCTCTCTCATCGTATCAAA 155
||||||||||||||||||||||||||| ||||||||||| ||| ||||| || |||| ||
Sbjct 81 ATCGTACTATCCGAAACTCTCCCTAGTTTGCAAGACCTTCCGCACTCTCCTCATATCTAA 140
Query 156 AGAGCTCAACGACGCCCGATTTCACCTTAAAACACAAGAAACCGTGTATCAAGTCTGTCT 215
||||||| | || ||||| ||||| ||||| || |||||| | | ||| ||||| ||
Sbjct 141 TGAGCTCATTGTGGCGCGATTGCACCTCAAAACCCATGAAACCTTTTGTCATGTCTG-CT 199
Query 216 -ACAGTTTACC-GATAATCCTCATCCCTCT-TGGTACACCCTCTGGATAAAACCTGGT-C 271
| ||||| || ||||| ||| |||| || || | |||||||||||||||||||||| |
Sbjct 200 TAAAGTTT-CCTGATAAACCTAATCCGTCAATGTT-CACCCTCTGGATAAAACCTGGTAC 257
Query 272 AAATCCTAACCAACCAACTCGAGGAGAAGACGAAGTCTA-ACCATATTATTCGGTTGGTA 330
|| || ||||||||||||| ||| |||| | || ||||| | | || | ||||||||||
Sbjct 258 AA-TCTTAACCAACCAACTTGAGAAGAACAAGAGGTCTACAAGAGAT-ACTCGGTTGGTA 315
Query 331 -A----C-TTCTTCTTGTTACTCTTATGTACCATT--ACGCATAGTT-TCCGTTGGTTCA 381
| | |||||| | ||| | | ||||||| || || | | ||| | ||||||||
Sbjct 316 CAAATACCTTCTTCATATTATTATAATGTACCGTTTTAC-C-TCGTTATG-GTTGGTTCC 372
Query 382 GAAATGTACGGAATCAGCCGATC-CAGTGCTCCGTCCTCGAACATGT 427
||| | |||||| |||||| | | || || ||||||||| |||||||
Sbjct 373 GAAGTATACGGACTCAGCCAA-CGCAATGATCCGTCCTCCAACATGT 418
> AT5G28180.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:10162783-10163943 FORWARD LENGTH=1059
Length=1059
Score = 268 bits (145), Expect = 5e-71
Identities = 320/401 (80%), Gaps = 26/401 (6%)
Strand=Plus/Plus
Query 43 TTTTTGTCACTTCCTGAAGAAATCATCTTGACCTGTTTAGCCCGCATACCGAGATCGTAC 102
|||||||| || ||||| |||||| |||||| |||||||||||||||| |||||||||||
Sbjct 109 TTTTTGTCGCTCCCTGATGAAATCGTCTTGAACTGTTTAGCCCGCATATCGAGATCGTAC 168
Query 103 TATCCGAAACTCTCCCTAGTCTGCAAGACCTTTCGCTCTCTCATCGTATCAAAAGAGCTC 162
|||||||||||||||||||||||||||||||| ||| ||||| || |||| || ||||||
Sbjct 169 TATCCGAAACTCTCCCTAGTCTGCAAGACCTTCCGCACTCTCCTCATATCTAACGAGCTC 228
Query 163 AACGACGCCCGATTTCACCTTAAAACACAA-GAAACCGTGTATCAAGTCTGTCT-ACAGT 220
| || || ||| | || |||||||| | | |||| | | ||| ||||| || | |||
Sbjct 229 ACCGTGGCGCGAGTGCAACTTAAAAC-CTACGAAAGTTTTTTTCATGTCTG-CTTAAAGT 286
Query 221 TTACC-GATAATCCTCATCCCTCT-TGGTACACCCTCTGGATAAAACCTGGTCAAATCCT 278
|| || ||||| ||| |||| || || | |||||||||||||||||||||||||||| |
Sbjct 287 TT-CCTGATAAACCTAATCCATCAATGTT-CACCCTCTGGATAAAACCTGGTCAAATCTT 344
Query 279 AACCAACCAACTCGAGGAGAA-GACGAAGTCTA-ACCATATTATTCGGTTGGTA-A---- 331
|||||||||||| ||| |||| || || ||||| | | | | |||||||||| |
Sbjct 345 AACCAACCAACTTGAGAAGAACGA-GAGGTCTACAGGAGCT-ACTCGGTTGGTACAAATA 402
Query 332 C-TTCTTCTTGTTACTCTTAT-GTACCA--TTACGCATAGTTTCCGTTGGTTCAGAAATG 387
| |||||| | || ||| || |||||| |||| | || |||| |||||||| ||| |
Sbjct 403 CCTTCTTCATATTGTTCT-ATTGTACCACATTAC-C-TAATTTCTGTTGGTTCCGAAGTA 459
Query 388 TACGGAATCAGCCGATC-CAGTGCTCCGTCCTCGAACATGT 427
|||||| |||||| | | || || ||||||||| |||||||
Sbjct 460 TACGGACTCAGCCAA-CACAATGATCCGTCCTCCAACATGT 499
> AT4G39060.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Galactose oxidase/kelch repeat superfamily protein
(TAIR:AT4G19250.1); Has 375 Blast hits to 365 proteins in 7
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants
- 367; Viruses - 0; Other Eukaryotes - 6 (source: NCBI
BLink). | chr4:18202607-18204634 FORWARD LENGTH=1107
Length=1107
Score = 108 bits (58), Expect = 1e-22
Identities = 69/74 (93%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 483 TGATGAATCCGTGAATTGGGCTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAACCTTT 542
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TGATGAATCAACGAATTGGGCTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAACCTTT 490
Query 543 AC-GTGACCCTGGC 555
|| | |||||||||
Sbjct 491 ACCG-GACCCTGGC 503
> AT4G39753.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18440112-18441445 FORWARD LENGTH=1334
Length=1334
Score = 99.0 bits (53), Expect = 6e-20
Identities = 146/190 (77%), Gaps = 10/190 (5%)
Strand=Plus/Plus
Query 445 GTCCTCAATGGGAAAATATATG-CACTCGGAGGCGGTGCTG--A-TGAATCCGTGAATTG 500
||| || || |||||||||||| | | ||||| |||| | | ||||||| |||||
Sbjct 578 GTCTTCGATAGGAAAATATATGTTA-TGGGAGGTTGTGCGGAAACCGAATCCGCAAATTG 636
Query 501 GGCTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAACCTTTACGTGACCCTGGCGCAGA 560
|| ||||||||| || |||||||||||||||||||||||||||| || |||| | | ||
Sbjct 637 GGGTGAGGTTTTTGATCCAAAGACTCAAACTTGGGAACCTTTACCTGTCCCTTCCCCTGA 696
Query 561 ACACTGCTTTTCTTCAAT--T-AGAGAAATACAGGTG-TGCGAAGGAAACATTAACGTTA 616
| | |||| |||||||| | ||| ||||| || || | | ||||||| || |||| |
Sbjct 697 GCTCCGCTTCTCTTCAATGATTAGAAAAATAGAGATGATCC-AAGGAAAGTTTTACGTGA 755
Query 617 TAAGCAATGA 626
||||||||
Sbjct 756 GGAGCAATGA 765
> AT4G19330.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:10554982-10558675 FORWARD LENGTH=1614
Length=1614
Score = 71.3 bits (38), Expect = 1e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 497 ATTGGGCTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAA 537
|||||||||| ||||||||||||||||||||||||||||||
Sbjct 1055 ATTGGGCTGAAGTTTTCGACCCAAAGACTCAAACTTGGGAA 1095
> AT4G19250.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:10531504-10532190 FORWARD LENGTH=687
Length=687
Score = 71.3 bits (38), Expect = 1e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 497 ATTGGGCTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAA 537
|||||||||| ||||||||||||||||||||||||||||||
Sbjct 155 ATTGGGCTGAAGTTTTCGACCCAAAGACTCAAACTTGGGAA 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5