BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg338459

Length=1755
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G58450.1 | Symbols: TPR6 | Tetratricopeptide repeat (TPR)-li...   715    0.0  


> AT1G58450.1 | Symbols: TPR6 | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr1:21718014-21718916 FORWARD LENGTH=495
Length=495

 Score =  715 bits (387),  Expect = 0.0
 Identities = 445/474 (94%), Gaps = 0/474 (0%)
 Strand=Plus/Plus

Query  1201  ATGAACAATGAAGAGAAGATAGAGGCTGCTAATAGAAAGAAAGAAGAAGGCAATCTGCTA  1260
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     ATGAACAATGGAGAGAAGATAGAGGCTGCTAATAGAAAGAAAGAAGAAGGCAATCTGCTA  60

Query  1261  TACAAAAATCAAAAGTACCAGCGAGCAGCAAAGAAATATAATAAGGCTGCAGATTTTATT  1320
             ||||||| |||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct  61    TACAAAACTCAAAAGTACGAGCGAGCAGCAAAGAAATATAATAAGGCTGCAGAATGTATT  120

Query  1321  GAGACTGGCAAATTTGAAGGTGATGAAGAAAAGCAACTCAAGGCTTTGAGAGTATCTTGC  1380
             || | ||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct  121   GAAAATGGCAAATTTGAAGGTGGTGACGAAAAGCAAGTCAAGGCTTTGAGAGTATCTTGC  180

Query  1381  TTCTTGAATGCTGCAGCCTGTAGTCTAAAACTGAAGAATTTTCGGGAAACTATCATTCTA  1440
             |||||||||| ||||||||||||||||||||| |||||||||| |||||||||| |||||
Sbjct  181   TTCTTGAATGGTGCAGCCTGTAGTCTAAAACTAAAGAATTTTCTGGAAACTATCGTTCTA  240

Query  1441  TGTTCGGAGGTATTAGATATTGAGTTCCAAAATGTGAAAGCTTTGTATAGGCGAGCACAA  1500
             ||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct  241   TGTTCGGAGGTGTTAGATATTGAGTTCCAAAATGTGAAAGCTCTATATAGGCGAGCACAA  300

Query  1501  TCCCATATTGAGGTGGGAGATTTGATTTCAGCAGAAATGGATATAAAAAAGGCTCTGGAG  1560
             ||| ||||||||||||||||||||||||||||||||||||||||||| | |||| |||||
Sbjct  301   TCCTATATTGAGGTGGGAGATTTGATTTCAGCAGAAATGGATATAAATAGGGCTTTGGAG  360

Query  1561  GCTGATCCTGAGAATCGGGAAGTGAAGTCCCTTTACAAAACGCTGAAATTCGCTAAAGCT  1620
             ||||||||||||||||||||||||||||| ||||||||  || ||||| || ||||||||
Sbjct  361   GCTGATCCTGAGAATCGGGAAGTGAAGTCTCTTTACAAGGCGATGAAACTCTCTAAAGCT  420

Query  1621  GAGAGCGACAGAAGAGACGCTAAGCTCTATGCAAACATGTTTGCACTATCTAAA  1674
             |||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct  421   GAGAGCGACAGAAGAGACGCTAAGTTGTATGCAAACATGTTTGCACTATCTAAA  474



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 86796742305


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5