BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg338522

Length=741
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18...   448    5e-125


> AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18036116-18040928 
FORWARD LENGTH=3159
Length=3159

 Score =  448 bits (242),  Expect = 5e-125
 Identities = 278/296 (94%), Gaps = 0/296 (0%)
 Strand=Plus/Plus

Query  387   GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCC  446
             ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct  1812  GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCC  1871

Query  447   TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAAGGAGAGAACGCGGTCGCCATTAG  506
             |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct  1872  TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAG  1931

Query  507   GATGAAAGGAATGGGAAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATACTG  566
             |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1932  GATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTG  1991

Query  567   GATGTCATTCGTTTCTCCACTCGGAGAGCCAATTCAAACGGAGTACCATATACCAAGATC  626
             |||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| |||||
Sbjct  1992  GATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATC  2051

Query  627   TTTCATGAAGGAGGAGAAGAAGAAGAGCATGTTGGTGATTCTCGAGGAAGAGCCAG  682
             ||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct  2052  TTTCATGAAGGGGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG  2107


 Score =  235 bits (127),  Expect = 4e-61
 Identities = 157/171 (92%), Gaps = 4/171 (2%)
 Strand=Plus/Plus

Query  220   AAC-TTAAGAACCAGAGATAATTGTATTTCAATTTTGGGTGTACTAACCGGATTACCAGA  278
             ||| |||| |||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct  1618  AACTTTAA-AACCGGAGATAATCGCATTTCAATTTTGGGTGTACTAACCGGATTACCAGA  1676

Query  279   CAGTGGATCATACATGGAACACACGTATGCCGGTCCACGTGGCG-TTTCAATCATCGGTT  337
             ||||||||||||||||||||||| || ||| |||||||||| |  |||||||||||||||
Sbjct  1677  CAGTGGATCATACATGGAACACAGGTTTGCTGGTCCACGTG-CTATTTCAATCATCGGTT  1735

Query  338   TAAAGTCAGGAACGCGAGATTTGATAGAGAACAATGAATGGGGACATTTGG  388
             ||||||||||||||||||||||||  |||||||||||||||||||| ||||
Sbjct  1736  TAAAGTCAGGAACGCGAGATTTGACCGAGAACAATGAATGGGGACACTTGG  1786



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35967649252


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5