BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338526
Length=1971
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57800.1 | Symbols: VIM5, ORTH3 | zinc finger (C3HC4-type RI... 1725 0.0
AT1G57820.1 | Symbols: VIM1, ORTH2 | Zinc finger (C3HC4-type RI... 1635 0.0
AT5G39550.1 | Symbols: VIM3, ORTH1 | Zinc finger (C3HC4-type RI... 658 0.0
AT1G66040.1 | Symbols: VIM4, ORTH4 | Zinc finger (C3HC4-type RI... 625 6e-178
AT1G66050.1 | Symbols: VIM2, ORTH5 | Zinc finger (C3HC4-type RI... 623 2e-177
AT4G08590.1 | Symbols: ORL1, VIM6, ORTHL | ORTHRUS-like | chr4:... 503 3e-141
> AT1G57800.1 | Symbols: VIM5, ORTH3 | zinc finger (C3HC4-type
RING finger) family protein | chr1:21408623-21412283 REVERSE
LENGTH=2107
Length=2107
Score = 1725 bits (934), Expect = 0.0
Identities = 1330/1515 (88%), Gaps = 51/1515 (3%)
Strand=Plus/Plus
Query 466 ACACCATGTGGGCACAACGCTTGTTTGAAATGTTTCTTGAAGTGGATGAGACAGGGAAAT 525
||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| |
Sbjct 511 ACACCATGTGGGCACAACGCTTGCTTGAAATGTTTCTTGAAGTGGATGGGGCAGGGACAC 570
Query 526 CGCAGTTGTGGAACATGCCGCAGCGTAGTTCCTGAAAGCATGATAAGCAATCCCCACATC 585
||||||||||||||||||||||||||| |||||||||||||| | | |||||||| |||
Sbjct 571 CGCAGTTGTGGAACATGCCGCAGCGTAATTCCTGAAAGCATGGTTACCAATCCCCGTATC 630
Query 586 AACTTGTCCATTGTGTCTGCTATTAGGTTGGCAAGATTATCTC-AGAGGGTTGATGCGAG 644
||||||||||||||||||||||||||||| |||||| |||| | | | || ||||||| |
Sbjct 631 AACTTGTCCATTGTGTCTGCTATTAGGTTAGCAAGAGTATC-CGAAAAGGCTGATGCGCG 689
Query 645 TACTTCTAAAGTTGTTCACGTCAT-AAG-CAATCAAGACCGTCCAGATAAAGCATTTACA 702
|||||| |||||||||||| | || | |||| |||| |||||||||||||||||||||
Sbjct 690 TACTTCAAAAGTTGTTCAC-T-ATGTTGACAATGAAGATCGTCCAGATAAAGCATTTACA 747
Query 703 ACCGATCGAGCTAAG-AAACTAGGGAATGCGAATGCTTCCAGCGGCAAGATTTTTGTAAC 761
|| || || |||||| |||| ||||||||| ||||||||||| |||||||||||||| ||
Sbjct 748 ACTGAGCGCGCTAAGAAAAC-AGGGAATGCAAATGCTTCCAGTGGCAAGATTTTTGTTAC 806
Query 762 AATCCCACGGGATCACTTTGGTCCTATACCAGCTGAACATGATCCTGTTAGGAACCAAGG 821
|||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 807 AATCCCTCGAGATCATTTTGGTCCTATACCAGCTGAAAATGATCCTGTTAGGAACCAAGG 866
Query 822 TGTTTTGGTTGGAGAATCCTGGAAGGGCCGACATAC-GGCTCGGCAGTGGGGGGTTCACT 880
| |||||||||||||||||||||||||||||| | | | |||||||||||||| |||||
Sbjct 867 TCTTTTGGTTGGAGAATCCTGGAAGGGCCGACTTGCTTG-TCGGCAGTGGGGGGCTCACT 925
Query 881 TCCCACTTGTTTCTGGCATTGCTGGACAAGCTAGTTATGGAGCTCAATCTGTTGTGCTCG 940
|||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 926 TCCCACATGTTTCCGGCATTGCTGGACAAGCGAGTTATGGAGCTCAATCTGTTGTGCTCG 985
Query 941 CTGGAGGTTATGAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGG 1000
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 CTGGAGGTTATGATGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGG 1045
Query 1001 GAAGAGAT-CTCAGTACTCGCAACTTAAGGACTAACAGCG-TTCAGGGTTTTGATCAAAA 1058
||||| || |||| | ||||| ||||||||||| || |||| | ||||||||||
Sbjct 1046 GAAGA-ATTCTCAA-AG--GCAACAAAAGGACTAACA-CGGTTCAAGCTTTTGATCAAGT 1100
Query 1059 ATTTGAAAAGTCTAATGAAGCCTTAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGT 1118
|||| ||| | ||||||||| ||||||||||| || ||||| |||||||||||||||||
Sbjct 1101 ATTTCTAAACTTTAATGAAGCTTTAAGACTTAGTTGTAAACTAGGGTATCCTGTTCGAGT 1160
Query 1119 TGTCAGGTCTTCCAAGGACATGCATTCTGCATACGCCCCTGAGGGAGAATTACTAAGGTA 1178
|||||||||| ||||||||| || |||| ||||||||||| | |||| | ||||||||||
Sbjct 1161 TGTCAGGTCTACCAAGGACAAGCGTTCTCCATACGCCCCTCAAGGAGGACTACTAAGGTA 1220
Query 1179 TGATGGGGTTTACCGCATCGAGAAATGTTGGATCAAAGTTGGAGTACAGGGTTCTTATAA 1238
|||||| |||||||| || |||||||| |||| | ||||||| ||||| ||
Sbjct 1221 TGATGGTGTTTACCGGATAGAGAAATGCTGGAGGATAGTTGGAATACAG-------AT-- 1271
Query 1239 GGTCTGTCGTTTCCTGTTTATTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGA 1298
| | | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 G-T--GCCGTTTCCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGA 1328
Query 1299 GCATGGAGATCGCCCAAGACCTTTGCCTAATGTTCCGGAGCTTAATATGGCCACAAACCT 1358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1329 GCATGGAGATCGCCCAAGACCTTTGCCTAATGTTCCTGAGCTTAATATGGCCACAGACCT 1388
Query 1359 ATTTGAGAGAAAAGAAAGTCCATCATGGGATTTTGATGAAGGTGAGGGTCGTTGGCGATG 1418
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1389 GTTTGAGAGAAAAGAAAGTCCATCATGGGATTTTGATGAAGGTGAGGATCGTTGGAGATG 1448
Query 1419 GATGAAGCCGCCACCTGCTAGTAGAAAGGCAGTTAATAATGTTAAGGATCCTGAGGAGAG 1478
||||||||| ||||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct 1449 GATGAAGCCACCACCTGCTAGTAAAAAGGCAGTTAAAAATGTTTTGGATCCTGAGGAGAG 1508
Query 1479 GAAATTTTTGAGGAAAGCCATGACA-TCGGCACGGTCGAATACGATGAGGGCAAGACTTC 1537
|||| |||||||| ||||||| | | |||||| ||||||| |||||||||||||||
Sbjct 1509 GAAACTTTTGAGGGAAGCCATAA-AGTCGGCAAACCCGAATACCATGAGGGCAAGACTTT 1567
Query 1538 TGAAAGAATTTAAGTGCCAGATCTGTCGGGAAGTGCTGACTAATCCTGTGACAACACCTT 1597
||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| ||||
Sbjct 1568 TGAAAGAATTTAAGTGCCAGATCTGTCAGAAAGTGATGACTAATCCTGTGACAACGCCTT 1627
Query 1598 GTGCTCATAACTTCTGCAAGGCTTGTATAGTATCCAAATTTGCTGGCAAAACGCTAGTGA 1657
|||||||||||||||||||||||||| | | ||| || |||||||| | | | |||||||
Sbjct 1628 GTGCTCATAACTTCTGCAAGGCTTGTTTGGAATCGAAGTTTGCTGGGACAGCTCTAGTGA 1687
Query 1658 GAGAGAGAAGCAGAGGTGGACGAACACTACGCGCACAAAAGAATGTCATGAAGTGCCCTT 1717
|||||||| |||| |||||||||| | |||| ||||||||| |||||||||||||||||
Sbjct 1688 GAGAGAGAGGCAGCGGTGGACGAAAATTACGTTCACAAAAGAGTGTCATGAAGTGCCCTT 1747
Query 1718 GTTGCCCAACAGACATTGCTGAATTTATCCAAAACCCTCAGGTCAATAGAGAAGTAGCAG 1777
|||||||||| |||||||| || ||| |||| |||||||||||||||||||||||||| |
Sbjct 1748 GTTGCCCAACGGACATTGCCGAGTTTGTCCAGAACCCTCAGGTCAATAGAGAAGTAGCGG 1807
Query 1778 ACGTCATAGAGAGGCTGAAGAACCAGGAGGAGGAGGACAACACAAAA-CATGTAGATGAA 1836
| || ||||||| ||||||||| ||||| |||||||| ||| |||| | | ||||||||
Sbjct 1808 AGGTGATAGAGAAGCTGAAGAAACAGGAAGAGGAGGAAAACGCAAAGTCTT-TAGATGAA 1866
Query 1837 GGTGAATGCTCAGGTACCAGCCATGAAGAAGAAACTCTGCCCGTGTCTGGAGATGCTGAG 1896
||| ||||||||||||||||||||||||||||| | || | || ||
Sbjct 1867 GGTCAATGCTCAGGTACCAGCCATGAAGAAGAA-----GA---TG-----A--TG---AG 1908
Query 1897 CAACCAAAGAAACGGATTAAGTTGGACATTGACGCAGCAGTTTCTGCGACTGTAGTGGAA 1956
|||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||
Sbjct 1909 CAACCAAAGAAACGGATTAAGTTGGACACTGACGCAGAAGTTTCTGCGACTGTTGTGGAA 1968
Query 1957 TCTGACATGAAGTAA 1971
|||||||||||||||
Sbjct 1969 TCTGACATGAAGTAA 1983
Score = 505 bits (273), Expect = 8e-142
Identities = 406/469 (87%), Gaps = 14/469 (3%)
Strand=Plus/Plus
Query 1 ATGACGCGTGACACCCAATTCCCGTGTGACCCCGCCGGTGTTTGCATGCGATGCAAATCG 60
||||||| || |||||| | ||| || ||||||| ||||| ||||||||||||||||||
Sbjct 1 ATGACGCCTGCCACCCAGTACCCATGCGACCCCGAAGGTGTATGCATGCGATGCAAATCG 60
Query 61 ACGCCTCCGCCGGAGGAATCTCTCACTTGCGGCACTTGCGTTACGCCTTGGCACGTGTCC 120
| |||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 61 ATGCCTCCACCGGAGGAATCTCTCACTTGCGGCACGTGCGTCACGCCTTGGCACGTGTCC 120
Query 121 TGCCTTTCT-TCACCTCCCAAAACCCTCGAA-T-CTACTTTACAGTGGCTTTGTCCTGAT 177
||||||| | || || ||| ||||||| || | ||||||||||||||||||||||||||
Sbjct 121 TGCCTTT-TGTCCCCGCCCGAAACCCT--AAGTGCTACTTTACAGTGGCTTTGTCCTGAT 177
Query 178 TGCTGCGGTGAAACCGATGCTCTTCCTGTTTCCGGCGTTGCGCCCGGATATGGATCTGTT 237
|||| |||||||||| || |||||||||||||||| |||||| | |||||||||||||||
Sbjct 178 TGCTCCGGTGAAACCAATCCTCTTCCTGTTTCCGGTGTTGCGGCTGGATATGGATCTGTT 237
Query 238 GGTTCAGATCTTGTAGTGGCGATCCACGAGATTGAAGCAGATGACTCTCTCTCTGCTGAA 297
|||||||||||||||| |||||||||| |||||| || ||||| ||||||||||||||
Sbjct 238 GGTTCAGATCTTGTAGCGGCGATCCACTCGATTGAGGCGGATGAAACTCTCTCTGCTGAA 297
Query 298 GAGAAGGCTAAGAAGAGGCAACAGTTACTGAGTGGTAAAGCCGTCGTCCATGAGGATGAC 357
|||||||||||||||| ||| ||||||||||||||||| | |||||| |||||||||||
Sbjct 298 GAGAAGGCTAAGAAGAAGCAGCAGTTACTGAGTGGTAAGGGGGTCGTCGATGAGGATGAC 357
Query 358 GAAGAAGAGAAGAAGAGGAAGAGTAAAGGGAAA-AAACCCGCTGATGAGGATGTGCTATC 416
|||||||||||||||| || ||||||||| ||| |||||| || | ||||||||||
Sbjct 358 GAAGAAGAGAAGAAGAAGACGAGTAAAGG-AAAGAAACCC----ATC-G-ATGTGCTATC 410
Query 417 GCACTTCCATTGCTCAATCTGTATGCAGTTGCTACAGAAACCAGTGTCG 465
|||||| | || || |||| ||||||| |||||| ||||| || |||
Sbjct 411 TCACTTCGAGTGTTCTTTCTGCATGCAGTCGCTACAAAAACCCGTCTCG 459
> AT1G57820.1 | Symbols: VIM1, ORTH2 | Zinc finger (C3HC4-type
RING finger) family protein | chr1:21414170-21417946 REVERSE
LENGTH=2154
Length=2154
Score = 1635 bits (885), Expect = 0.0
Identities = 1581/1909 (83%), Gaps = 79/1909 (4%)
Strand=Plus/Plus
Query 1 ATGACGCGTGACACCCAATTCCCGTGTGACCCCGCCGGTGTTTGCATGCGATGCAAAT-C 59
||| ||||||||| |||| |||| || ||| || ||| || |||||||||||||||| |
Sbjct 45 ATGGCGCGTGACATCCAACTCCCCTGCGACGGCGACGGCGTATGCATGCGATGCAAATCC 104
Query 60 GACGCCTCCGCCGGAGGAATCTCTCACTTGCGGCACTTGCGTTACGCCTTGGCACGTGTC 119
|| |||||||| || |||||||||||||||||||| |||||||| || |||||||||||
Sbjct 105 AAC-CCTCCGCCTGAAGAATCTCTCACTTGCGGCACGTGCGTTACACCGTGGCACGTGTC 163
Query 120 CTGCCTTTCTTCACCTCCCAAAACCCTCGAATCTACTTTACAGTGGCTTTGTCCTGATTG 179
||| || |||||||||||||||||||| | || ||| ||||||||| ||||||||||||
Sbjct 164 CTGTCTCTCTTCACCTCCCAAAACCCTAGCTTCCACTCTACAGTGGCATTGTCCTGATTG 223
Query 180 CTGCGGTGAAACCGATGCTCTTCCTGTTTCCGGCGTTGCGCCCGGATAT-GGATCTGTTG 238
|| ||| |||| |||| |||||||||||||||||| ||| | || | | | ||||| ||
Sbjct 224 CTCCGGCGAAATCGATCCTCTTCCTGTTTCCGGCGGTGCTACTGG-TTTCGAATCTGCTG 282
Query 239 GTTCAGATCTTGTAG-TGGCGATCCACGAGATTGAAGCAGATGACTC-TCTCTCTGCTGA 296
| ||||||||||||| | ||||| | | |||||| || ||||| || | | | ||||
Sbjct 283 GGTCAGATCTTGTAGCT-GCGATTCGTGCGATTGAGGCTGATGAGTCGT-TGAGTACTGA 340
Query 297 AGAGAAGGCTAAGAAGAGGCAACAGTTACTGAGTGGTAAAGCCGTCGTCCATGAGGATGA 356
|||||| ||||||| |||||||| ||||||||||||||||| || || | ||||||||
Sbjct 341 AGAGAAAGCTAAGATGAGGCAACGGTTACTGAGTGGTAAAG--GT-GTTGAGGAGGATGA 397
Query 357 CGAAGAAGAG-A-A-GAAGAGGAAGAGTAAAGGGAAAAAACCCG---CT-GATGAG-GAT 408
||||||||| | | ||||| |||| | |||||| || || ||| || |||| | ||
Sbjct 398 TGAAGAAGAGAAGAGGAAGAAGAAGGGGAAAGGG-AAGAATCCGAATCTGGATGTGTTAT 456
Query 409 GTGCT-AT--CG--CACTTCCAT-TGCTCAATCTGTATGCAGTTG-CTACAGAAACCAGT 461
|||| | | |||| || || || |||||||||||||| || ||| ||| ||
Sbjct 457 CTGCTCTTGGAGATAACTT-GATGTGTTCTTTCTGTATGCAGTTGCCT-GAGAGACCTGT 514
Query 462 GTCGACACCATGTGGGCACAACGCTTGTTTGAAATGTTTCT-TGAAGTGGATGAGACAGG 520
| ||| ||||||||||||||||||||| || |||||||| | ||| |||||| | ||||
Sbjct 515 GACGAAACCATGTGGGCACAACGCTTGCTTAAAATGTTT-TGAGAAATGGATGGGGCAGG 573
Query 521 GAAATCGCAGTTGTGG-AACATGCCGCAGCGTAGTTCCTGAAAGCAT-GATAAGCAATCC 578
|||| | | |||||| || |||||||||| || ||||||||| || | |||| |||||
Sbjct 574 GAAAGAGAACTTGTGGTAA-ATGCCGCAGCATAATTCCTGAAAAAATGGCTAAG-AATCC 631
Query 579 CCACATCAACTTGTC-CATTG-TGTCTGCTATTAGGTTGGCAAGATTATCTCAGAGGGTT 636
|| ||||||| ||| | ||| || |||| ||| | || |||| | | ||| | || | |
Sbjct 632 CCGTATCAACTCGTCTC-TTGTTG-CTGCCATTCGATTAGCAAAAGTCTCTAAAAGTGCT 689
Query 637 GATGCGAGTACTTCTAAA-GT-TGTTCACGTCATAAGCAATCAAGACCGTCCAGATAAAG 694
| ||||| ||||| ||| || | |||| |||| ||||| |||||||| ||||||||||
Sbjct 690 GCTGCGACCACTTC-AAAGGTCT-TTCATTTCATCAGCAACCAAGACCGACCAGATAAAG 747
Query 695 CATTTACAACCGATCGAGCTAAG-AAACTAGGGAATGCGAATGCTTCCAGCGGCAAGATT 753
||||||||||||| || || ||| ||||| || || || || ||| | || || ||||||
Sbjct 748 CATTTACAACCGAGCGTGCAAAGAAAACT-GGCAAGGCAAACGCTGCTAGTGGAAAGATT 806
Query 754 TTTGTAACAATCCCACGGGATCACTTTGGTCCTATACCAGCTGAACATGATCCTGTTAGG 813
| ||| ||||| |||| ||||| ||||||||||| ||||||||| |||| ||||| |||
Sbjct 807 TATGTTACAATACCACCAGATCATTTTGGTCCTATTCCAGCTGAAAATGACCCTGTCAGG 866
Query 814 AACCAAGGTGTTTTGGTTGGAGAATCCTGGAAGGGCCGACATACG-G-CTCGGCAGTGGG 871
||||||||| |||||||||||||||||||| ||| | ||| | || | | |||||||||
Sbjct 867 AACCAAGGTCTTTTGGTTGGAGAATCCTGGGAGGACAGAC-T-CGAGTGTAGGCAGTGGG 924
Query 872 GGGTTCACTTCCCACTTGTTTCTGGCATTGCTGGACAAGCTAGTTATGGAGCTCAATCTG 931
| | ||| ||||||| |||| ||||||||||||||||| ||| |||||| ||||||||||
Sbjct 925 GTGCTCATTTCCCACATGTTGCTGGCATTGCTGGACAATCTACTTATGGCGCTCAATCTG 984
Query 932 TTGTGCTCGCTGGAGGTTATGAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAG 991
| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 985 TAGCACTCTCTGGAGGTTATAAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAG 1044
Query 992 GAAGTGGGGGAAGAGATCTCAGTACTCGCAACTTAAGGACTAACA-GCGTTCAGGGTTTT 1050
|||||||||| |||||||||||| ||||| ||||||||||| | | ||| ||||
Sbjct 1045 GAAGTGGGGGTAGAGATCTCAGTG---GCAACAAAAGGACTAACAAG-GAGCAGTCTTTT 1100
Query 1051 GATCAAAAATTTGAAAAGTCTAATGAAGCCTTAAGACTTAGCTGCAAACTGGGGTATCCT 1110
|| ||||| ||||| |||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct 1101 GACCAAAAGTTTGAGAAGTCTAATGCAGCATTAAAACTCAGCTGCAAATTGGGGTATCCT 1160
Query 1111 GTTCGAGTTGTCAGGTCTTC-CAAGGACATGCATTCTGCATACGCCCCTGAGGGAGAATT 1169
|||||||||||||||||| | |||||| | || |||||||||||||||||||| || | |
Sbjct 1161 GTTCGAGTTGTCAGGTCT-CACAAGGAGAAGCGTTCTGCATACGCCCCTGAGGAAGGAGT 1219
Query 1170 ACTAAGGTATGATGGGGTTTACCGCATCGAGAAATGTTGGATCAAAGTTGGAGTACAGGG 1229
| | ||||||||||||||| | || ||||| || ||| ||||||||||||||||||
Sbjct 1220 G--A-GATATGATGGGGTTTACAGGATTGAGAAGTGCTGGCGCAAAGTTGGAGTACAGGG 1276
Query 1230 TTCTTATAAGGTCTGTCGTTTCCTGTTTATTAGATGTGACAATGAGCCAGCTCCATGGAC 1289
||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1277 TTCTTTTAAGGTCTGTCGTTACCTGTTCGTTAGATGTGACAATGAGCCAGCTCCATGGAC 1336
Query 1290 CAGTGATGAGCATGGAGATCGCCCAAGACCTTTGCCTAATGTTCCGGAGCTTAATATGGC 1349
|||||||||| |||||||||| ||||||||| | |||||| |||| ||||||||||||||
Sbjct 1337 CAGTGATGAGAATGGAGATCGTCCAAGACCTATCCCTAATATTCCAGAGCTTAATATGGC 1396
Query 1350 CACAAACCTATTTGAGAGAAAAGAAAGTCCATCATGGGATTTTGATGAAGGTGAGGGTCG 1409
||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1397 CACCGACCTGTTTGAGAGAAAAGAAACTCCATCATGGGATTTTGATGAAGGTGAGGGTTG 1456
Query 1410 TTGGCGATGGATGAAGCCGCCACCTGCTAGTAGAAAGGCAGTTAATAATGTTAAGGATCC 1469
|||| ||||||||||||||||||||| |||| |||| |||| ||| | || || |||
Sbjct 1457 TTGGAAATGGATGAAGCCGCCACCTGCAAGTAAAAAGTCAGTGAATGTT-TT--GGCTCC 1513
Query 1470 TGAGGAGAGGAAATTTTTGAGGAAAGCCATGACAT-CGGCACGGTCGAATACGATGAGGG 1528
||||||||||||| ||||||||||||||| | | |||||| |||||||| |||||||
Sbjct 1514 TGAGGAGAGGAAAAATTTGAGGAAAGCCATAA-AGGCGGCACACTCGAATACCATGAGGG 1572
Query 1529 CAAGACTTCTGAAAGAATTTAAGTGCCAGATCTGTCGGGAAGTGCTGACTAATCCTGTGA 1588
|||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||
Sbjct 1573 CAAGACTTCTGAAAGAATTTAAGTGCCAGATCTGTCAGCAAGTGTTGACTCTTCCTGTGA 1632
Query 1589 CAACACCTTGTGCTCATAACTTCTGCAAGGCTTG-TATAGTATCCAAATTTGCTGGCAAA 1647
||||||| |||||||||||||||||||||||||| | ||| | | ||||||||||| |||
Sbjct 1633 CAACACCCTGTGCTCATAACTTCTGCAAGGCTTGCT-TAGAAGCGAAATTTGCTGGGAAA 1691
Query 1648 ACGCTAGTGAGAGAGAGAAGCAGAGGTGGACGAACACTACGCGCACAA-AAGAATGTCAT 1706
|| || |||||||||||||||| ||||||||| ||||||||| || | ||||||||| |
Sbjct 1692 ACTCTTGTGAGAGAGAGAAGCACAGGTGGACGGACACTACGCTCA-AGGAAGAATGTCCT 1750
Query 1707 GAAGTGCCCTTGTTGCCCAACAGACAT-TGCTGAATTTATCCAAAACCCTCAGGTCAATA 1765
||| ||||||||||||||||||||||| | |||| ||| | || |||||||||||||| |
Sbjct 1751 GAACTGCCCTTGTTGCCCAACAGACATAT-CTGATTTTCTGCAGAACCCTCAGGTCAACA 1809
Query 1766 GAGAAGTAGCAGACGTCATAGAGAGGCTGAAGAACCAGGAGGAGGAGGACAACACA-A-- 1822
|||||||||| || || ||||||| ||| |||| |||||| || |||||| | || |
Sbjct 1810 GAGAAGTAGCGGAGGTGATAGAGAAGCTAAAGACCCAGGA--AG-AGGACACCGCAGAGC 1866
Query 1823 ---AACATGTAGATGAAGGTGAATGCTCAGGTACCAGCCATGAAGAAGA 1868
|| ||| ||||||||||||||||||||| |||| || |||||||||
Sbjct 1867 TTGAAGATGAAGATGAAGGTGAATGCTCAGGCACCACCCCTGAAGAAGA 1915
> AT5G39550.1 | Symbols: VIM3, ORTH1 | Zinc finger (C3HC4-type
RING finger) family protein | chr5:15837210-15840638 REVERSE
LENGTH=2187
Length=2187
Score = 658 bits (356), Expect = 0.0
Identities = 880/1122 (78%), Gaps = 79/1122 (7%)
Strand=Plus/Plus
Query 671 GCAATCAAGACCGTCCAGATAAAGCATTTACAACCGATCGAGC--TAAGAAACTAGGGAA 728
|||| ||||||||||| || ||||||||||| ||||| || || ||| ||||| |||||
Sbjct 770 GCAACCAAGACCGTCCTGAGAAAGCATTTACTACCGAGCGGGCAGTAA-AAACT-GGGAA 827
Query 729 TGCGAATGCTTCCAGCGGCAAGATTTTTGTAACAATCCCACGGGATCACTTTGGTCCTAT 788
|| |||||| | ||||| ||| ||||||| ||||| || || ||||| |||||||| ||
Sbjct 828 AGCTAATGCTGCTAGCGGTAAGTTTTTTGTGACAATACCTCGTGATCATTTTGGTCCCAT 887
Query 789 ACCAGCTGA-ACATGATCCT-GTTAGGAACCAAGGTGTTTTGGTTGGAGAATCCTGGAAG 846
||||||||| | ||||| | ||| || ||||||||||||||||||||||| ||| ||
Sbjct 888 ACCAGCTGAGA-ATGAT-GTCACTAGAAAGCAAGGTGTTTTGGTTGGAGAATCTTGGGAG 945
Query 847 GGCCGAC-ATACG-GCTCGGCAGTGGGGGGTTCACTTCCCACTTGTTTCTGGCATTGCTG 904
| | | | | | | | | |||||||||| | ||| ||||| | | || |||||||||| |
Sbjct 946 GACAGGCAAGA-GTG-TAGGCAGTGGGGAGCTCATTTCCCGCATATTGCTGGCATTGCCG 1003
Query 905 GACAAGCTA--GTTATGGAGCTCAATCTGTTGTGCTCGCTGGAGGTTATGAGGATGATGA 962
| ||| | | | | ||||||||| ||||| | ||| ||||||||||||| ||||||||
Sbjct 1004 GGCAATC-AGCGGT-TGGAGCTCAGTCTGTGGCCCTCTCTGGAGGTTATGACGATGATGA 1061
Query 963 GGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGGGAAGAGATCTCAGTACTCGCAA 1022
||||||||| ||||||||||| |||||||||||||| ||||| |||||||| | | ||
Sbjct 1062 GGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAGGGATCTCAG---TGGAAA 1118
Query 1023 CTTAAGGACTAAC-AGCGTTCAG-GGTTTTGATCAAAAATTTGAAAAGTC-T-AATGAAG 1078
| ||| | |||| || ||| | | ||| || ||| |||| | | ||||||
Sbjct 1119 CAAAAGAATTAACAAG-AAACAGTCG-TCTGACCAGGCGTTT-AAAA-ACATGAATGAA- 1173
Query 1079 CCT-TAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGTTGTCAGGTCTTCCAAGGAC 1137
|| |||||||||| |||||| |||| |||||||| |||||||||||||||| |||||
Sbjct 1174 TCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTCAGGTCTTGGAAGGAG 1233
Query 1138 ATGCATTCTGCATACGCCCCTGAGGGAGAATTACTAAGGTATGATGGGGTTTACCGCATC 1197
| || ||||||||| ||||||| || | | | || ||||||||||| || || ||
Sbjct 1234 AAGCGTTCTGCATATGCCCCTG-CTGA-AGGT-GTGAGATATGATGGGGTCTATCGAATT 1290
Query 1198 GAGAAATGTTGGA-TCAAAGTTGGAGTACAGGGTTCTTATAAGGTCTGTCGTTTCCTGTT 1256
||||| || |||| | || ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1291 GAGAAGTGCTGGAGT-AATGTTGGAGTACAGGGTTCTTTTAAGGTCTGTCGTTACCTGTT 1349
Query 1257 TATTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGAGATCGCCCAAG 1316
| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1350 TGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGCGATCGTCCAAG 1409
Query 1317 ACCTTTGCCTAATGTTCCGGAGCTTAATA-TGGCCACAAACCTATTTGAGAGAAAAGAAA 1375
||| ||||||||||||||||||||| | | || | | |||| |||| |||||| || |
Sbjct 1410 ACCGTTGCCTAATGTTCCGGAGCTTGAGACTG-CTGCTGACCTGTTTGTGAGAAAGGAGA 1468
Query 1376 GTCCATCATGGGATTTTGATGAAGGTGAGGGTCGTTGGCGATGGATGAAGCCGCCACCTG 1435
|||||||||||||||| ||||||| ||||||||||||| |||||||||| | || ||||
Sbjct 1469 GTCCATCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAAATGGATGAAGTCTCCTCCTG 1528
Query 1436 CTAGTAGAAAGGCAGTTAATAATGTTAAGGATCCTGAGGAGAGGAAATTTTTGAGGAA-A 1494
||| |||| ||| || | | | |||||||||||||||| || ||| |
Sbjct 1529 TTAGCAGAATGGC--TT--T---G----G-ATCCTGAGGAGAGGAA------GAAGAATA 1570
Query 1495 GCCATGACATCGGCACGGTCGAATACGATGAGGGCAAGACTTCTGAAAGAATTTAAGT-G 1553
| || | | || ||||| |||| ||| ||||||||||||||||||| || |
Sbjct 1571 ---A-GAGA--G-CAAAA---AATACTATGAAGGCCAGACTTCTGAAAGAATTTA-GTTG 1619
Query 1554 CCAGATCTGTCGGGAAGTGCTGACTAATCCTGTGACAACACCTTGTGCTCATAACTTCTG 1613
||| ||||||||||||||||||| | ||| ||||| || |||||||| || ||||||||
Sbjct 1620 CCAAATCTGTCGGGAAGTGCTGAGTCTTCCAGTGACGACGCCTTGTGCACACAACTTCTG 1679
Query 1614 CAAGGCTTG-TATAGTATCCAAATTTGCTGGCAAAACGCTAGTGAGAGAGAGAAGCAGA- 1671
||| || || | ||| | | || |||||||| | ||| | | ||||||||||||||| |
Sbjct 1680 CAAAGCATGCT-TAGAAGCGAAGTTTGCTGGGATAACTCAACTGAGAGAGAGAAGCA-AT 1737
Query 1672 GGTGGACG-AACACTACGCGCACAA-AAGAATGTCATGAAGTGCCCTTGTTGCCCAACAG 1729
|| ||||| || |||||| ||| || ||||| |||||| |||||||| ||| | || |
Sbjct 1738 GGCGGACGTAA-ACTACGTGCA-AAGAAGAACATCATGACCTGCCCTTGCTGCACGACGG 1795
Query 1730 A-CAT-TGCTGAATTTATCCAAAACCCTCAGGTCAATAGAGA 1769
| | | | | || ||| |||||||||| ||||| || |||||
Sbjct 1796 ATC-TCTCC-GAGTTTCTCCAAAACCCGCAGGTGAACAGAGA 1835
> AT1G66040.1 | Symbols: VIM4, ORTH4 | Zinc finger (C3HC4-type
RING finger) family protein | chr1:24583820-24586681 REVERSE
LENGTH=1869
Length=1869
Score = 625 bits (338), Expect = 6e-178
Identities = 877/1127 (78%), Gaps = 78/1127 (7%)
Strand=Plus/Plus
Query 671 GCAATCAAGACCGTCCAGATAAAGCATTTACAACCGATCGAGC--TAAGAAACTAGGGAA 728
|||| ||||||||||| || ||||||||||| ||||| || || ||| ||||| |||||
Sbjct 635 GCAACCAAGACCGTCCTGACAAAGCATTTACTACCGAGCGGGCAGTAA-AAACT-GGGAA 692
Query 729 TGCGAATGCTTCCAGCGGCAAGATTTTTGTAACAATCCCACGGGATCACTTTGGTCCTAT 788
|| |||||| | ||||| ||| ||||||| ||||| || || ||||| |||||||| ||
Sbjct 693 AGCTAATGCTGCTAGCGGTAAGTTTTTTGTGACAATACCTCGTGATCATTTTGGTCCCAT 752
Query 789 ACCAGCTG-AACATGATCCT-GTTAGGAACCAAGGTGTTTTGGTTGGAGAATCCTGGAAG 846
|||||||| | ||||| | ||| |||||||||||||||||||||||||| ||| ||
Sbjct 753 ACCAGCTGCGA-ATGAT-GTCACTAGAAACCAAGGTGTTTTGGTTGGAGAATCTTGGGAG 810
Query 847 GGCCGAC-ATACG-GCTCGGCAGTGGGGGGTTCACTTCCCACTTGTTTCTGGCATTGCTG 904
| | | | | | | | | |||||||||| ||||| ||||| | |||| |||||||||| |
Sbjct 811 GACAGGCAAGA-GTG-TAGGCAGTGGGGAGTTCATTTCCCGCATGTTGCTGGCATTGCCG 868
Query 905 GACAAGCTA--GTTATGGAGCTCAATCTGTTGTGCTCGCTGGAGGTTATGAGGATGATGA 962
| ||||| | | | ||||||||| ||||| | ||| ||||||||||||| ||||||||
Sbjct 869 GGCAAGC-AGCGGT-TGGAGCTCAGTCTGTGGCCCTCTCTGGAGGTTATGACGATGATGA 926
Query 963 GGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGGGAAGAGATCTCAGTACTCGCAA 1022
||||||||| ||||||||||| |||||||||||||| ||||| |||||||| | | ||
Sbjct 927 GGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAGGGATCTCAG---TGGAAA 983
Query 1023 CTTAAGGA-CTAAC-AGCGTTCAGGGTTTTGATCAAAAATTTGAAAAGTC-T-AATGAAG 1078
| || || |||| || | ||| || ||| || ||| |||| | | |||||||
Sbjct 984 C-AAAAGAGTTAACAAG-ATACAGTCTTCTGACCAGGCGTTT-AAAA-ACATGAATGAAG 1039
Query 1079 CCT-TAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGTTGTCAGGTCTTCCAAGGAC 1137
|| |||||||||| |||||| |||| |||||||| |||||||| ||||||| |||||
Sbjct 1040 -CTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTAAGGTCTTGGAAGGAG 1098
Query 1138 ATGCATTCTGCATACGCCCCTGAGGGAGAATTACTAAGGTATGATGGGGTTTACCGCATC 1197
| || ||||||||| |||||| | | ||| | | || || |||||||| ||| | ||
Sbjct 1099 AAGCGTTCTGCATATGCCCCT--GCG-GAAGGAGTGAGATACGATGGGGTCTACAGAATT 1155
Query 1198 GAGAAA-TGTTGGA-TCAAAGTTGGAGTACAGGGTTCT-TATAAGGTCTGTCGTTTCCTG 1254
|| ||| || |||| | || ||||| |||||||||| | ||||| | ||||||| ||||
Sbjct 1156 GA-AAAGTGCTGGAGT-AATGTTGGCGTACAGGGTT-TGCATAAGATGTGTCGTTACCTG 1212
Query 1255 TTTATTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGAGATCGCCCA 1314
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1213 TTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGCGATCGTCCA 1272
Query 1315 AGACCTTTGCCTAATGTTCCGGAGCTTAATA-TGGCCACAAACCTATTTGAGAGAAAAGA 1373
|||||||||||| ||||||| ||||| | | || | || |||| |||| |||||| ||
Sbjct 1273 AGACCTTTGCCTGATGTTCCAGAGCTGGAGAATG-CTACTGACCTGTTTGTGAGAAAGGA 1331
Query 1374 AAGTCCATCATGGGATTTTGATGAAGGTGAGGGTCGTTGGC-GATGGATGAAGCCGCCAC 1432
||||||||||||| ||| ||||||| ||||||||||||| | ||||||||| | ||||
Sbjct 1332 GAGTCCATCATGGGGTTTCGATGAAGCTGAGGGTCGTTGGAAG-TGGATGAAGTCTCCAC 1390
Query 1433 CTGCTAGTAGAAAGGCAGTTAATAATGTTAAGGATCCTGAGGAGAGGAA-ATTTTTGAGG 1491
||| ||| |||| ||| || | | | || ||||||||||||| | | ||
Sbjct 1391 CTGTTAGCAGAATGGC--TT--T---G----G-ATACTGAGGAGAGGAAGAAGAATAAG- 1437
Query 1492 AAAGCCATGACATCGGCACGGTCGAATACGATGAGGGCAAGACTTCTGAAAGAATTTAAG 1551
| ||| | | | || | | ||| | |||| ||| ||||||||||||||||| | |
Sbjct 1438 AGAGCAAAAAAA--GGAAA--T--AATGCTATGAAGGCCAGACTTCTGAAAGAATTCA-G 1490
Query 1552 T-GCCAGATCTGTCGGGAAGTGCTGACTAATCCTGTGACAACACCTTGTGCTCATAACTT 1610
| |||| ||||||||| ||||||||| | ||| ||||| ||||||||||| || |||||
Sbjct 1491 TTGCCAAATCTGTCGGAAAGTGCTGAGTCTTCCAGTGACGACACCTTGTGCACACAACTT 1550
Query 1611 CTGCAAGGCTTG-TATAGTATCCAAATTTGCTGGCAAAACGCTAGTGAGAGAGAGAAGCA 1669
|||||| || || | ||| | | || |||||||| | ||| | | ||||||| |||||||
Sbjct 1551 CTGCAAAGCATGCT-TAGAAGCGAAGTTTGCTGGGATAACTCAACTGAGAGACAGAAGCA 1609
Query 1670 GA-GGTG-GACG-AACACTACGCGCACA-AAAGAATGTCATGAAGTGCCCTTGTTGCCCA 1725
| || | | || || |||||| ||| | ||| || |||||| |||||||| ||| ||
Sbjct 1610 -ATGGCGTG-CGTAA-ACTACGTGCAAAGAAA-AACATCATGACCTGCCCTTGCTGCACA 1665
Query 1726 ACAGA-CAT-TGCTGAATTTATCCAAAACCCTCAGGTCAATAGAGAA 1770
|| || | | | | || ||| |||||||||| ||||| || ||||||
Sbjct 1666 ACCGATC-TCTCC-GAGTTTCTCCAAAACCCGCAGGTGAACAGAGAA 1710
> AT1G66050.1 | Symbols: VIM2, ORTH5 | Zinc finger (C3HC4-type
RING finger) family protein | chr1:24589487-24592747 FORWARD
LENGTH=2050
Length=2050
Score = 623 bits (337), Expect = 2e-177
Identities = 876/1126 (78%), Gaps = 78/1126 (7%)
Strand=Plus/Plus
Query 671 GCAATCAAGACCGTCCAGATAAAGCATTTACAACCGATCGAGC--TAAGAAACTAGGGAA 728
|||| ||||||||||| || ||||||||||| ||||| || || ||| ||||| |||||
Sbjct 682 GCAACCAAGACCGTCCTGACAAAGCATTTACTACCGAGCGGGCAGTAA-AAACT-GGGAA 739
Query 729 TGCGAATGCTTCCAGCGGCAAGATTTTTGTAACAATCCCACGGGATCACTTTGGTCCTAT 788
|| |||||| | ||||| ||| ||||||| ||||| || || ||||| |||||||| ||
Sbjct 740 AGCTAATGCTGCTAGCGGTAAGTTTTTTGTGACAATACCTCGTGATCATTTTGGTCCCAT 799
Query 789 ACCAGCTG-AACATGATCCT-GTTAGGAACCAAGGTGTTTTGGTTGGAGAATCCTGGAAG 846
|||||||| | ||||| | ||| |||||||||||||||||||||||||| ||| ||
Sbjct 800 ACCAGCTGCGA-ATGAT-GTCACTAGAAACCAAGGTGTTTTGGTTGGAGAATCTTGGGAG 857
Query 847 GGCCGAC-ATACG-GCTCGGCAGTGGGGGGTTCACTTCCCACTTGTTTCTGGCATTGCTG 904
| | | | | | | | | |||||||||| ||||| ||||| | |||| |||||||||| |
Sbjct 858 GACAGGCAAGA-GTG-TAGGCAGTGGGGAGTTCATTTCCCGCATGTTGCTGGCATTGCCG 915
Query 905 GACAAGCTA--GTTATGGAGCTCAATCTGTTGTGCTCGCTGGAGGTTATGAGGATGATGA 962
| ||||| | | | ||||||||| ||||| | ||| ||||||||||||| ||||||||
Sbjct 916 GGCAAGC-AGCGGT-TGGAGCTCAGTCTGTGGCCCTCTCTGGAGGTTATGACGATGATGA 973
Query 963 GGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGGGAAGAGATCTCAGTACTCGCAA 1022
||||||||| ||||||||||| |||||||||||||| ||||| |||||||| | | ||
Sbjct 974 GGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAGGGATCTCAG---TGGAAA 1030
Query 1023 CTTAAGGA-CTAAC-AGCGTTCAGGGTTTTGATCAAAAATTTGAAAAGTC-T-AATGAAG 1078
| || || |||| || | ||| || ||| || ||| |||| | | |||||||
Sbjct 1031 C-AAAAGAGTTAACAAG-ATACAGTCTTCTGACCAGGCGTTT-AAAA-ACATGAATGAAG 1086
Query 1079 CCT-TAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGTTGTCAGGTCTTCCAAGGAC 1137
|| |||||||||| |||||| |||| |||||||| |||||||| ||||||| |||||
Sbjct 1087 -CTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTAAGGTCTTGGAAGGAG 1145
Query 1138 ATGCATTCTGCATACGCCCCTGAGGGAGAATTACTAAGGTATGATGGGGTTTACCGCATC 1197
| || ||||||||| |||||| | | ||| | | || || |||||||| ||| | ||
Sbjct 1146 AAGCGTTCTGCATATGCCCCT--GCG-GAAGGAGTGAGATACGATGGGGTCTACAGAATT 1202
Query 1198 GAGAAA-TGTTGGA-TCAAAGTTGGAGTACAGGGTTCT-TATAAGGTCTGTCGTTTCCTG 1254
|| ||| || |||| | || ||||| |||||||||| | ||||| | ||||||| ||||
Sbjct 1203 GA-AAAGTGCTGGAGT-AATGTTGGCGTACAGGGTT-TGCATAAGATGTGTCGTTACCTG 1259
Query 1255 TTTATTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGAGATCGCCCA 1314
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1260 TTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGCGATCGTCCA 1319
Query 1315 AGACCTTTGCCTAATGTTCCGGAGCTTAATA-TGGCCACAAACCTATTTGAGAGAAAAGA 1373
|||||||||||| ||||||| ||||| | | || | || |||| |||| |||||| ||
Sbjct 1320 AGACCTTTGCCTGATGTTCCAGAGCTGGAGAATG-CTACTGACCTGTTTGTGAGAAAGGA 1378
Query 1374 AAGTCCATCATGGGATTTTGATGAAGGTGAGGGTCGTTGGC-GATGGATGAAGCCGCCAC 1432
||||||||||||| ||| ||||||| ||||||||||||| | ||||||||| | ||||
Sbjct 1379 GAGTCCATCATGGGGTTTCGATGAAGCTGAGGGTCGTTGGAAG-TGGATGAAGTCTCCAC 1437
Query 1433 CTGCTAGTAGAAAGGCAGTTAATAATGTTAAGGATCCTGAGGAGAGGAA-ATTTTTGAGG 1491
||| ||| |||| ||| || | | | || ||||||||||||| | | ||
Sbjct 1438 CTGTTAGCAGAATGGC--TT--T---G----G-ATACTGAGGAGAGGAAGAAGAATAAG- 1484
Query 1492 AAAGCCATGACATCGGCACGGTCGAATACGATGAGGGCAAGACTTCTGAAAGAATTTAAG 1551
| ||| | | | || | | ||| | |||| ||| ||||||||||||||||| | |
Sbjct 1485 AGAGCAAAAAAA--GGAAA--T--AATGCTATGAAGGCCAGACTTCTGAAAGAATTCA-G 1537
Query 1552 T-GCCAGATCTGTCGGGAAGTGCTGACTAATCCTGTGACAACACCTTGTGCTCATAACTT 1610
| |||| ||||||||| ||||||||| | ||| ||||| ||||||||||| || |||||
Sbjct 1538 TTGCCAAATCTGTCGGAAAGTGCTGAGTCTTCCAGTGACGACACCTTGTGCACACAACTT 1597
Query 1611 CTGCAAGGCTTG-TATAGTATCCAAATTTGCTGGCAAAACGCTAGTGAGAGAGAGAAGCA 1669
|||||| || || | ||| | | || |||||||| | ||| | | ||||||| |||||||
Sbjct 1598 CTGCAAAGCATGCT-TAGAAGCGAAGTTTGCTGGGATAACTCAACTGAGAGACAGAAGCA 1656
Query 1670 GA-GGTG-GACG-AACACTACGCGCACA-AAAGAATGTCATGAAGTGCCCTTGTTGCCCA 1725
| || | | || || |||||| ||| | ||| || |||||| |||||||| ||| ||
Sbjct 1657 -ATGGCGTG-CGTAA-ACTACGTGCAAAGAAA-AACATCATGACCTGCCCTTGCTGCACA 1712
Query 1726 ACAGA-CAT-TGCTGAATTTATCCAAAACCCTCAGGTCAATAGAGA 1769
|| || | | | | || ||| |||||||||| ||||| || |||||
Sbjct 1713 ACCGATC-TCTCC-GAGTTTCTCCAAAACCCGCAGGTGAACAGAGA 1756
> AT4G08590.1 | Symbols: ORL1, VIM6, ORTHL | ORTHRUS-like | chr4:5463885-5466671
REVERSE LENGTH=1634
Length=1634
Score = 503 bits (272), Expect = 3e-141
Identities = 551/677 (81%), Gaps = 54/677 (8%)
Strand=Plus/Plus
Query 772 GATCACTTTGGTCCTATACCAGCTGAACATGATCCTGTTAGGAACCAAGGTGTTTTGGTT 831
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 697 GATCACTTTGGTCCTATACCAGCTGAACATGATCCTGTCAGGAACCAAGGTGTTTTAGTT 756
Query 832 GGAGAATCCTGGAAGGGCCGAC-ATACG-GCTCGGCAGTGGGGGGTTCACTTCCCACTTG 889
|||||||||||| || ||| | | | | ||||||||||||||||||||| |||| ||
Sbjct 757 GGAGAATCCTGGGAGAATCGAGTAGA-GTG-TCGGCAGTGGGGGGTTCACTTGCCACATG 814
Query 890 TTTCTGGCATTGCTGGACAAGCTAGT-TATGGAGCTCAATCTGTTGTGCTCGCTGGAGGT 948
||||| ||||||||||||||| || ||||||||||| ||||| || | ||||||||
Sbjct 815 TTTCTTGCATTGCTGGACAAGA-AGACTATGGAGCTCAGTCTGTAGTAATATCTGGAGGT 873
Query 949 TATGAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGG-GAAG-AG 1006
||| ||||||| ||||||||||||||||||||||||||||||||||| | | || | ||
Sbjct 874 TATAAGGATGACGAGGATCATGGAGAATGGTTTCTATACACAGGAAG-GAGTAGAGGGAG 932
Query 1007 ATCTCAGTACTCGC-AACTTAAGGACTAACAGCGTTCAGGGTTTTGATCAAAAATTTGAA 1065
| | | | |||| ||| | ||| | ||| | || ||| || | | || |||
Sbjct 933 A-C--ATT--TCGCTAACG-A-GGA-T--CAG-G---AG--TTT-GA--AGAC-TT-GAA 971
Query 1066 --AAG-TCTAATGAAGCCTTAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGTTGTC 1122
||| | ||| || | ||| | || || | ||| |||||||||| ||||||||||||
Sbjct 972 TGAAGCTTTAA-GA-G--TTA-G--TT-GC-G-AAA-TGGGGTATCCAGTTCGAGTTGTC 1020
Query 1123 AGGTCTTCCAAGGACATGCATTCTGCATACGCCCCTGAGGGAGAATTACTAAGGTATGAT 1182
||||||| |||||| | | |||||||||| |||||| ||| || | | | | ||||||
Sbjct 1021 AGGTCTTACAAGGATAGGTATTCTGCATATGCCCCTAAGGAAGGAGTG--A-GATATGAT 1077
Query 1183 GGGGTTTACCGCATCGAGAAATGTTGGATCAAAGTTGGAGTACAGGGTTC-TTATAAGGT 1241
|| || ||| | ||||||||||| ||| |||| | || | | || ||| || ||||||
Sbjct 1078 GGTGTATACAGGATCGAGAAATGCTGGCGAAAAGCTAGATTCCCGGATTCATT-TAAGGT 1136
Query 1242 CTGTCGTTTCCTGTTTATTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCA 1301
|||||||| ||||||| | |||||||||||||||||||||||||||| |||||||||| |
Sbjct 1137 CTGTCGTTACCTGTTTGTAAGATGTGACAATGAGCCAGCTCCATGGAACAGTGATGAG-A 1195
Query 1302 -TGGAGATCGCCCAAGACCTTTGCCTAATGTTCCGGAGCTT-AATATGGCCACAAACCTA 1359
||||||||| |||||||||||||||||| |||| |||||| || | |||| || ||||
Sbjct 1196 GTGGAGATCGTCCAAGACCTTTGCCTAATATTCCAGAGCTTGAA-ACGGCCTCAGACCTG 1254
Query 1360 TTTGAGAGAAAAGAAAGTCCATCATGGGATTTTGATGAAGGTGAGGGTCGTTGGCGATGG 1419
||||||||||| |||||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 1255 TTTGAGAGAAAGGAAAGTCCATCATGGGATTTTGATGAAGCCGAGGGCCGTTGGAGATGG 1314
Query 1420 ATGAAGCCGCCACCTGC 1436
|||||||| ||||||||
Sbjct 1315 ATGAAGCCTCCACCTGC 1331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97640060025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5