BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg338589

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27750.1 | Symbols:  | nucleic acid binding | chr1:9657385-9...   307    8e-83
  AT2G20580.1 | Symbols: RPN1A, ATRPN1A | 26S proteasome regulato...   156    3e-37


> AT1G27750.1 | Symbols:  | nucleic acid binding | chr1:9657385-9661958 
FORWARD LENGTH=3476
Length=3476

 Score =  307 bits (166),  Expect = 8e-83
 Identities = 206/225 (92%), Gaps = 3/225 (1%)
 Strand=Plus/Plus

Query  109  CCTGAATCTCAGCCTCCG---CCACCGCAATTAGAATCCCAATCCCCTTCTACGGTGGTT  165
            ||||||||||| ||||||   ||||||||| |||||||||||||||||||||||||||| 
Sbjct  92   CCTGAATCTCACCCTCCGCCACCACCGCAACTAGAATCCCAATCCCCTTCTACGGTGGTA  151

Query  166  AGCTCGTTCCTAGCTCCGGTGACGCCATCGCCTCCATCTCAGGAGGAAATTCAAACCAGA  225
            ||||||||||  ||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct  152  AGCTCGTTCCCGGCTCCGGTGACACCGTCGCCTCCATCTCAGGAGGAAATTCAAACGAGA  211

Query  226  AGAAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTCAAATCTTCT  285
            || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct  212  AGTAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTTAAATCTTGT  271

Query  286  ATTGGTCAGAGAGATGGTGGTGGGTGCTCTGCGAATCTTGAGCAA  330
             ||| ||||||||||||||| ||  ||||||||||||||||||||
Sbjct  272  GTTGCTCAGAGAGATGGTGGCGGCCGCTCTGCGAATCTTGAGCAA  316


 Score = 99.0 bits (53),  Expect = 5e-20
 Identities = 53/53 (100%), Gaps = 0/53 (0%)
 Strand=Plus/Plus

Query  30   CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT  82
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT  350


> AT2G20580.1 | Symbols: RPN1A, ATRPN1A | 26S proteasome regulatory 
subunit S2 1A | chr2:8858988-8864865 FORWARD LENGTH=3065
Length=3065

 Score =  156 bits (84),  Expect = 3e-37
 Identities = 96/102 (94%), Gaps = 0/102 (0%)
 Strand=Plus/Plus

Query  402  GTCTGAAGAGGACTTGGAACTAAAGCAGAACCTTGAGCTCTATGTCGAGAGGGTTCAGGA  461
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  340  GTCTGAAGAGGACTTGGAACTAAAGCAGAACCTTGAGCTCTATGTTGAGAGGGTTCAGGA  399

Query  462  TCCCAATCCCGAGTTGCAGAAGGCTGCTCTTGAAAGCATGAG  503
            ||| ||||| || |||||||||||||| ||||| ||||||||
Sbjct  400  TCCTAATCCGGAATTGCAGAAGGCTGCCCTTGAGAGCATGAG  441



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31295873581


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5