BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338626
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65150.1 | Symbols: | TRAF-like family protein | chr1:24203... 839 0.0
AT1G65050.1 | Symbols: | TRAF-like superfamily protein | chr1:... 231 5e-60
> AT1G65150.1 | Symbols: | TRAF-like family protein | chr1:24203841-24205775
REVERSE LENGTH=1312
Length=1312
Score = 839 bits (454), Expect = 0.0
Identities = 586/649 (90%), Gaps = 12/649 (2%)
Strand=Plus/Plus
Query 96 TCTCACTTTCTTTGTCTTTAGCGAGGAAGAGAAGAAGTACCTCTCTATTCAAGATGTTGA 155
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 344 TCTCACTTTCTTTGTCTTCAGCGAGGAAGAGAAGAAGTACCTCTCTTTTCAAGATGTTGA 403
Query 156 AGTAAAGCGTTTCAATTCTTCAAAAACGGTTTGGGGATTGTCACAAGCTCTTTCGATTGA 215
||| ||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 404 AGTGAAGCGTTTCAATTCTTCAAAAACGGTTTGGGGATTGTCAAAAGCTCTTCCGGTTGA 463
Query 216 AGCACTCAAAGACCGTGCAAAGGGATTTATCTTGTACGGAGAACTACATGAGTTTGGAGC 275
| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| || ||
Sbjct 464 AACACTCAAAGACCGTGCAAAGGGATTTATCTTGTACGGTGAAGAACATGAGTTCGGTGC 523
Query 276 TCATGTGAAGATTGTTTCACGACCCGACTCCTTTGGTGAAGATCTCCCTTTTCACAAATT 335
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 524 TCATGTGAAGATTGTTTCACGACCCGCCTCTTTTGGTGAAGATCTCCCTTTTCACAAATT 583
Query 336 CTCTTGGACTATTCGTGATTTCTCTCTTCTCAG-ACAGAATGATTGCGTTTCGAAAACCT 394
|||||||||||||||||||||| ||||||| | ||||||||||| ||| || |||||||
Sbjct 584 CTCTTGGACTATTCGTGATTTCGCTCTTCT-GGAACAGAATGATTACGTATCCAAAACCT 642
Query 395 TTCACATGGGAGAAAAGGATTGGACTCTAACTTTGTATCCAAAGGGGGACTCTAGA-GCA 453
|||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||
Sbjct 643 TTCACATGGGAGAAAAGGATTGGACTCTAAAGTTGTATCCAAAGGGGGACTCT-GAGGCA 701
Query 454 GATGGCGAGTT-ATCCCAGCATTTGCATTTAACTGACAATGATACTTTATTGAAGGGTGA 512
|||| | |||| || ||||||||||||||| ||||| ||| |||||| ||||||||
Sbjct 702 GATGACAAGTTAAT-TCAGCATTTGCATTTAGCTGACGGTGAAACTTTAGCCAAGGGTGA 760
Query 513 GCTGATTTTCGTGCGAGTAAACCTGAAGGTTCTAGACCCGCGTGGATCCAATCACCTATC 572
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 761 GCTGATTTTCGTGCGAGTAAACCTGAAGGTTCTAGACCCGCGTGGATCCAATCACCTAAC 820
Query 573 AGTATGGCTTAAAAGTTGGCTCTTGAACTCGAACAAAGCGTGGGGTAAGACC-CAATCCA 631
|| | | ||||| |||||||| ||||||||||||||||||||||| || |||||||
Sbjct 821 AGGAAGCCTTAACTGTTGGCTCATGAACTCGAACAAAGCGTGGGGTCTT-CCTCAATCCA 879
Query 632 TGTCTTTAGATAAAATTCAGGGGGCTTACTTGGACCGTGAAGGTACTTTGGAGGTAGAGA 691
||||||| ||||||| | |||||||||||||||| |||||||| ||||||||||||||||
Sbjct 880 TGTCTTTCGATAAAAATGAGGGGGCTTACTTGGATCGTGAAGGGACTTTGGAGGTAGAGA 939
Query 692 TCGAATGTGAAGTTGTTAACTCC-ATCAAAAACCATCCCTGT-TTTTAG 738
| ||||||||| || |||||| || ||||||||||||| | ||||||
Sbjct 940 TTGAATGTGAAATTAAAAACTCCCAT-AAAAACCATCCCT-TCTTTTAG 986
> AT1G65050.1 | Symbols: | TRAF-like superfamily protein | chr1:24164286-24165679
REVERSE LENGTH=687
Length=687
Score = 231 bits (125), Expect = 5e-60
Identities = 145/155 (94%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 96 TCTCACTTTCTTTGTCTTTAGCGAGGAAGAGAAGAAGTACCTCTCTATTCAAGATGTTGA 155
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 249 TCTCACTTTCTTTGTCTTTAGCGAAGAAGAGAAGAGGTACCTCTCTATTCAAGATGTTGA 308
Query 156 AGTAAAGCGTTTCAATTCTTCAAAAACGGTTTGGGGATTGTCACAAGCTCTTTCGATTGA 215
||| ||| | |||||||| |||||||||||||||||||||||||||| |||| || ||||
Sbjct 309 AGTTAAGAGGTTCAATTCCTCAAAAACGGTTTGGGGATTGTCACAAGTTCTTCCGGTTGA 368
Query 216 AGCACTCAAAGACCGTGCAAAGGGATTTATCTTGT 250
| |||||||||||||||||||||||||||||||||
Sbjct 369 AACACTCAAAGACCGTGCAAAGGGATTTATCTTGT 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5