BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338628
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65160.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 603 2e-171
AT1G04640.1 | Symbols: LIP2 | lipoyltransferase 2 | chr1:129208... 496 3e-139
AT1G65170.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 488 5e-137
AT1G65140.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 401 7e-111
> AT1G65160.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr1:24206224-24207738 FORWARD LENGTH=930
Length=930
Score = 603 bits (326), Expect = 2e-171
Identities = 403/439 (92%), Gaps = 9/439 (2%)
Strand=Plus/Plus
Query 406 TCTGTATTCAAGCATTTTACATTTGAGAATATCGTTAAGGTCATCAAGATGAACTTAAAG 465
|||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 418 TCTGCATTCAAGGATTTTACATTTGAGAATATCATTAAGGTCATCAAGATGAACTTAAAG 477
Query 466 ATGCCTTGTGATAAGGAAGGATGTGGAAAACGGAA-CTATGTTCAACGTATGATAAATAA 524
|||||||||||||||||||||||||| |||| || ||||||||| |||||||||| ||
Sbjct 478 ATGCCTTGTGATAAGGAAGGATGTGGGAAAC-AAAGCTATGTTCACCGTATGATAACCAA 536
Query 525 ACTTCCATCTGTTTTCACAATTGCACTTGAGTGGACAAAGAATGAGACTGCAGGAGAAAT 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ACTTCCATCTGTTTTCACAATTGCACTTGAGTGGACAAAGAATGAGACTGCAGGAGAAAT 596
Query 585 ATACGATACTGCTTCTGTTCTGGCGACTGAGATTGATGTTAGTGTGATATACCAATACAA 644
|| |||||| | ||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 597 ATTCGATACAGTTTCTGTTCTGGCGACTGAGATTGATGTTAATGTGATATACCAATGCGA 656
Query 645 AGGTGACAGTAC-ATGCACTAAATACCGTCTTGTCTCAATGGTTTGCTCGCATGGAGAA- 702
|||||||| | | || || || ||||||||||||||||||||||||| ||||||| ||
Sbjct 657 AGGTGACA-TTCGATATACCAAGTACCGTCTTGTCTCAATGGTTTGCTTGCATGGA-AAT 714
Query 703 CGATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGATATCTTCGTTCTGAGATA 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CGATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGATATCTTCGTTCTGAGATA 774
Query 763 GAGGTTATTGGAGACTGGGATAGTGTTGTCAGCATTTGTTTAACGCAGAGTATTCGACCC 822
|||||||||||||||||||| | |||||||||||||||||||| | | | ||| || ||
Sbjct 775 GAGGTTATTGGAGACTGGGAGAATGTTGTCAGCATTTGTTTAAAG-A-A-TATCCGTCCA 831
Query 823 CAGATTCTGTTTTTTGAAA 841
|||||||||||||| ||||
Sbjct 832 CAGATTCTGTTTTTCGAAA 850
Score = 538 bits (291), Expect = 5e-152
Identities = 347/374 (93%), Gaps = 4/374 (1%)
Strand=Plus/Plus
Query 4 GATCCAGATCGATCAGTAACGCAAGACGATGCAGAGGAATCTGTAGTGAAACGAAACGCC 63
|||||||||| ||| ||||||||||||||||||||||| || ||| ||| | |||||||
Sbjct 46 GATCCAGATCTCTCACTAACGCAAGACGATGCAGAGGAACCTATAGGGAAGCTAAACGCC 105
Query 64 ACTTGTGTTTCAGCTCTTAATATGATAATCAAGTCTCTATGGGACATTAACGTTTTCGCA 123
|| ||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||||
Sbjct 106 ACCTGTGTTTCAGCTCTTGCTATGATACTCAAGTCTATATGGAACATTAACGTTTTCGCA 165
Query 124 AGCTCCAGAGAAGATGAACCTGTTTTTCATGAGTTCCTTCTCAACGATCTAAGTCTCAAA 183
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 166 AGCTCCAGAGAAGATGAATCTGTTTTTCATGAGTTCCTTCTCAACGATCTAAGTCTCAAG 225
Query 184 CATCCTCTGGAAGCAAATGGTGTTTTTGACCTGTTTCTAAACATCTTGGAGGCTTTGCCT 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 226 CATCCTCTGGAAGCAAATGGTGTTTTTGACCTGTTTCTAAACATCTTGGAGGCTCTGCCT 285
Query 244 AACTGGGGTTCGTACTTTGAAGTATACGAAATGGCGAAAAAGATTTGCAATAGATGCAAG 303
|||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 286 AACTGGGGTTTGTACTTTGAAGTATACGAAGTGGCTAAAAAGATTTGCAATAGATGCAA- 344
Query 304 A-TGGATTTGGAATATCC-GACTGAACGTTCTTTTGGTCTTATCATCAATGCTAGTTCAC 361
| |||||||||||||||| | |||||||||||||| |||||||||||| |||||||||||
Sbjct 345 ACTGGATTTGGAATATCCTG-CTGAACGTTCTTTTCGTCTTATCATCAGTGCTAGTTCAC 403
Query 362 TCAGAGAAGTCAAG 375
| ||||||||||||
Sbjct 404 TTAGAGAAGTCAAG 417
> AT1G04640.1 | Symbols: LIP2 | lipoyltransferase 2 | chr1:1292080-1293357
FORWARD LENGTH=896
Length=896
Score = 496 bits (268), Expect = 3e-139
Identities = 360/404 (89%), Gaps = 7/404 (2%)
Strand=Plus/Plus
Query 855 TGG-GACATTGGTGCGGTCACTCATCGGA-TTTGCTTCTATTTATGGCGTGAAAGCTCGT 912
||| |||||||| ||||||| | ||| || |||||||| ||||||||||||||||||||
Sbjct 408 TGGAGACATTGGAGCGGTCAATGATC-GAGTTTGCTTCGATTTATGGCGTGAAAGCTCGA 466
Query 913 GCGGGAAACGAATATGATACTGGGGTTTGGGTTGGTGATAGAAAGATTGCTGCTATTGGG 972
|| |||||| ||| ||| ||||||||||||||||| ||||| ||||| | ||||||||||
Sbjct 467 GCAGGAAACAAATGTGAGACTGGGGTTTGGGTTGGGGATAGGAAGATCGGTGCTATTGGG 526
Query 973 GTTCGAATATCTTCTGGAATCACTTGTCATGGTTTGGCCTTTAACATATATCCTGATTTG 1032
||| | |||||||||||||||||| |||||||||||||||| || ||| |||||||| ||
Sbjct 527 GTTAGGATATCTTCTGGAATCACTAGTCATGGTTTGGCCTTAAATATAGATCCTGATATG 586
Query 1033 AAATACTTTGAGCACATTGTACCTTATGGGATTCCTGATAAACAAGTTACATCGTTGCGA 1092
|| ||||||||||||||||| |||| ||||||| |||||||| |||||||||| ||||||
Sbjct 587 AAGTACTTTGAGCACATTGTGCCTTGTGGGATTGCTGATAAAGAAGTTACATCTTTGCGA 646
Query 1093 AAAGAGACGGATACCT-TGCTTCCTTCAGAAGAAGTGATTCATGAGCAGTTGGTTTCTTG 1151
| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 647 AGAGAGACGGATA-CTCTGCTTCCTTCAGAAGAAGTGATTCATGAACAGTTGGTTTCTTG 705
Query 1152 TTTAGCCAAAGTGTTTTCTTATGATGATATTGTGTGGAAGGAAGATCCTTCAGTCATTTT 1211
||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||||||
Sbjct 706 TTTAGCCAAAGCGTTTTCTTATGATGATGTTGTCTGGAAGGAAGATCCTTCACTCATTTT 765
Query 1212 GGTCACCCCAGATAACGAATT-TCTCGGTTTGATCAGGTTTTGA 1254
|| ||||| |||||| |||| || |||||||||| ||||||||
Sbjct 766 GGACACCCAAGATAAAGAATAATC-CGGTTTGATCCGGTTTTGA 808
> AT1G65170.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr1:24209613-24211116 FORWARD LENGTH=780
Length=780
Score = 488 bits (264), Expect = 5e-137
Identities = 384/440 (87%), Gaps = 16/440 (4%)
Strand=Plus/Plus
Query 410 TATTCAAGCATTTTACATTTGAGAA-TATCGTT-AAGGTCATCAAGATGAA-CTTAAAGA 466
||||| || || ||||||| ||||| | ||||| || |||||| ||| || ||||||||
Sbjct 272 TATTCGAGAATCTTACATTCGAGAAGT-TCGTTCAA-ATCATCAGGAT-AAGCTTAAAGA 328
Query 467 TGCCTTGTGATAAGGAAGGATGTGGAAAACGGAACTATGTTCAACGTATGATAAATAAAC 526
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 329 TGCCTTGTGATAAGGAAGGATGTGGGAAACGAAACTATGTTCAACGTATGATAAATAAAC 388
Query 527 TTCCATCTGTTTTCACAATTGCACTTGAGTGGACAA-AGAATGAGACTGCAGGAGAAATA 585
||||| |||||||||||||||| ||||||||| || | |||||||||| |||||| |||
Sbjct 389 TTCCAACTGTTTTCACAATTGCGCTTGAGTGGG-AACACAATGAGACTGAAGGAGAGATA 447
Query 586 TACGATACTGCTTCTGTTCTGGCGACTGAGATTGATGTTAGTGTGATATACCAATACAAA 645
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 448 TTTGATACAACTTCTGTTCTGGCGACTGAGATTGATGTTAGTGTGATATACCAATACGAA 507
Query 646 GGTGACAGTACATGCACTAAATACCGTCTTGTCTCAATGGTTTGCTCGCATGGAGAACGA 705
||||| ||| ||| || |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 508 GGTGATAGTGCATTTACCAAATACCGTCTTGTCTCAATGGTTTGCTCGGATGGAGATCGA 567
Query 706 TACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGATATCTTCGTTCTGAGATAGAG 765
|||||||| |||||||||||| ||||||||||||||||| || || ||||| ||| | ||
Sbjct 568 TACAACTGCGTAGCTTATGAAGACAATAGATGGGTCAGACATGTTGGTTCTCAGAAAAAG 627
Query 766 GTTATTGGAGACTGGGATAGTGTTGTCAGCATTTGTTT-A-A-C-GCAGAGTATTCGACC 821
|||||||||||||||||| ||||| ||||||||| || | | | ||| ||||||| |
Sbjct 628 GTTATTGGAGACTGGGATGGTGTTCTCAGCATTT-TTCGAGAACTGCA---TATTCGATC 683
Query 822 CCAGATTCTGTTTTTTGAAA 841
||||||||||||||||||
Sbjct 684 TGAGATTCTGTTTTTTGAAA 703
Score = 132 bits (71), Expect = 1e-29
Identities = 136/167 (81%), Gaps = 5/167 (3%)
Strand=Plus/Plus
Query 157 TTCC-TTCTCAACGATCTAAGTCTCAAACATCCTCTGGAAGCAAATGGTGTTTTTGACCT 215
|||| || ||||| |||| ||||||| || |||| |||||||||| | ||||||||
Sbjct 102 TTCCTTTATCAACAATCTCAGTCTCAGTCAACCTCCGGAAGCAAATAACATCTTTGACCT 161
Query 216 GTTTCTAAACATCTTGGAG-GCTTTGCCTAAC-TGGGGTTCGTACTTTGAAGTATACGAA 273
||| || ||||||||||| | || ||| | ||| | | ||||||||||| ||||||
Sbjct 162 ATTTGTATACATCTTGGAGAAC-TTACCT-CCGTGGAATCCATACTTTGAAGTGTACGAA 219
Query 274 ATGGCGAAAAAGATTTGCAATAGATGCAAGATGGATTTGGAATATCC 320
||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 220 TTGGCGAACAAGATTTGCAATAGATGCAAGATGGATTTGGAGTATCC 266
> AT1G65140.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr1:24201617-24203226 FORWARD LENGTH=957
Length=957
Score = 401 bits (217), Expect = 7e-111
Identities = 374/447 (84%), Gaps = 22/447 (5%)
Strand=Plus/Plus
Query 406 TCTGTATTCAAGCATTTTACATTTGAGAATATCGTTAAGGTCATCAAGATGAACT-TAAA 464
|||| ||||||| | |||||||||||||||||| |||||| || || ||| || | ||||
Sbjct 472 TCTGCATTCAAGGAGTTTACATTTGAGAATATCATTAAGGCCAGCATGATCAA-TGTAAA 530
Query 465 GATGCCTTGTGATAAGGAAGGATGTGGAAAACGGAACTATGTTCA-ACGTATGATAAATA 523
||||| |||||| |||||||||||||| ||||| ||||||||| | || |||||||| ||
Sbjct 531 GATGCTTTGTGACAAGGAAGGATGTGGGAAACGAAACTATGTTGATAC-TATGATAAGTA 589
Query 524 AACTTCCATCTG-TTTTCACAATTGCACTTGAGT-GGACAAAGAATGAGACTGCAGGAGA 581
| |||||||||| |||| | | |||||||| ||| ||| || |||||||| | | |||
Sbjct 590 ACCTTCCATCTGCTTTT-ATAGTTGCACTTCAGTGGGA-GAACAATGAGACCGAAAAAGA 647
Query 582 AATATACGATACTGCTTCTGTTCTGGCGACTGAGATTGATGTTAGTG-TGATATACCA-A 639
|||| |||||| |||||||||||||||||||| || ||| |||||| | ||||| | |
Sbjct 648 GATATTCGATACAGCTTCTGTTCTGGCGACTGAAATAGATATTAGTGCT-ATATA-TAGA 705
Query 640 TACAAAGGTGACAGTACATGCACTAAATACCGTCTTGTCTCAATGGTTTGCTCGCATGGA 699
|| |||||||||| ||| || |||||||||||||||||||||||||| |||||||||
Sbjct 706 TATGTAGGTGACAGTGCATTTACCAAATACCGTCTTGTCTCAATGGTTTGGTCGCATGGA 765
Query 700 GAA-CGATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGATATCTTCGTTCTGA 758
|| | |||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 766 -AATCTATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGACATTTTTGTTCTGA 824
Query 759 GATAGAGGTTATTGGAGACTGGGATAGTGTTGTCAGCATTTGTTT-A-A-C-GCAGAGTA 814
||||||||||||||||||||||||| ||||| || |||||| || | | | ||| ||
Sbjct 825 GATAGAGGTTATTGGAGACTGGGATGGTGTTCTCCGCATTT-TTCGAGAACTGCA---TA 880
Query 815 TTCGACCCCAGATTCTGTTTTTTGAAA 841
||||||| ||||||| || |||||||
Sbjct 881 TTCGACCTGAGATTCTATTCTTTGAAA 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61646269260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5