BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338653
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43990.2 | Symbols: SUVR2, SDG18 | SET-domain containing pro... 1181 0.0
AT5G44000.1 | Symbols: | Glutathione S-transferase family prot... 322 5e-87
> AT5G43990.2 | Symbols: SUVR2, SDG18 | SET-domain containing protein
lysine methyltransferase family protein | chr5:17697889-17702005
FORWARD LENGTH=2637
Length=2637
Score = 1181 bits (639), Expect = 0.0
Identities = 762/819 (93%), Gaps = 17/819 (2%)
Strand=Plus/Plus
Query 38 CAGAAGTTGACAGAGGAAAGAAGAAGCTCCATGAATCTATCGAGGAAGACGATGATG-CA 96
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |
Sbjct 456 CAGAAGTTGACAGAGGAAAGAAAAAGCTCCATGAATCTATCGAGGATGACGAAGATGTTA 515
Query 97 CTGGCTGAGTCTGATCGCCCTTTAAAGAGGCTGCGGCGCAGAGGTGAAGGAGGCTCTGCT 156
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 516 -TGGCTGAGTCTGATCGCCCTTTAAAGAGGCTGCGACGCAGAGGTGAAGGAGGCTCTGCT 574
Query 157 TTGACAAGCCCTAGCTTGGGGAGTCCGACTTTAGA-GGAGCCTTCGACTT-ATGACGAAG 214
||| |||||||||||||||| |||||||||||||| ||| ||||| | || |||||||||
Sbjct 575 TTGGCAAGCCCTAGCTTGGGCAGTCCGACTTTAGAGGGA-CCTTC-AATTAATGACGAAG 632
Query 215 AAAATGCTCCAATCCTATTGCCATATCATCCTGTACCAACTAAAAATGACCATGATGCTG 274
|||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 633 AAAATGCTCCGATCCTATTGCCATATCATCCTGTACCAATTGAAAATGACCATGATGCTG 692
Query 275 GTGAGCTCATTATTCCAAAAGTCGAGCCCATTACAAATATGCCTCTCAGTTCTATTCATC 334
||||||||||| || ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 693 GTGAGCTCATTCTTACAAAAGTCGAGCCCATTACAAATATGCCTCTCAGTTCTA-T--TC 749
Query 335 CTGATTCAGTAGAGCGAGAGAACTCTTCAGTTCCCATGCTTGAGATGGAGAAAACAAATG 394
||||||||||||| ||| | | | || || ||||||||||||| || ||| ||||||
Sbjct 750 CTGATTCAGTAGATAGAGGGGA--C-TC--TT-CCATGCTTGAGATAGACAAATCAAATG 803
Query 395 GACATGTGGAAGAGGGGGCTGGTGAAACAGTAAGTACTGCTGATGGTACTACCAATGACG 454
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 GACATGTGGAAGAGAAGGCTGGTGAAACAGTAAGTACTGCTGATGGTACTACCAATGACA 863
Query 455 TTTCTCCTACAACTGTTGGGAGATTTAGTGAGCACAAGCTAGCTGCAACCATAGAAGAAC 514
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 864 TTTCTCCTACAACTGTTGCGAGATTTAGTGATCACAAGCTAGCTGCAACCATAGAAGAAC 923
Query 515 CAT-CAGCACTTGAATTAGCTTCTTCTGCTTCAGGCGAAGTGAAGATTAATCTTAGTTTT 573
| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 924 C-TCCAGCACTTGAATTAGCTTCTTCTGCTTCAGGCGAGGTGAAGATTAATCTTAGTTTT 982
Query 574 GCTCCTGCAACTGGAGGATCAAATCTATATTTACCTTCTATGGAGGAACTACGAAGAGCA 633
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 983 GCTCCTGCAACTGGAGGATCAAATCCCCATTTACCTTCTATGGAGGAACTACGAAGAGCA 1042
Query 634 ATGGAGGAGAAGTGTCTTCGATCGTACAAAATACTGGACCCCAACTTTTCTGTGCTTGGT 693
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1043 ATGGAGGAGAAGTGTCTCCGATCATACAAAATACTGGACCCCAACTTTTCTGTGCTTGGT 1102
Query 694 TTTATGAACGACATCTGTAGCTGCTACATGGACCTGGCAACAAAGGGGAAAGATTCAGCT 753
||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||
Sbjct 1103 TTTATGAACGACATCTGTAGCTGCTACCTGGACCTGGCAACAAACGGGAGAGATTCAGCT 1162
Query 754 AACCAGTTGCCAAAAAACTTGCCGTTTGTCACAGCAAACATTGATGCATTGAAGAAATCT 813
||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1163 AACCAATTGCCAAAAAACTTGCCGTTTGTCACAACGAACATTGATGCATTGAAGAAATCT 1222
Query 814 GCAGCAAGGATGGCTTTTACTTCACAGGGCAGTAATGAT 852
|||||||||||||||| |||||| |||| ||||||||||
Sbjct 1223 GCAGCAAGGATGGCTTATACTTCTCAGGCCAGTAATGAT 1261
Score = 78.7 bits (42), Expect = 1e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 853 CATATGCGTGATGTTGAAAACGGTGCAGTTGGTGATTCCATGGCT 897
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1286 CATATGCGTGATGCTGAAAACGGTGCAGTTGGTGATTCCATGGCT 1330
> AT5G44000.1 | Symbols: | Glutathione S-transferase family protein
| chr5:17702090-17703963 REVERSE LENGTH=1370
Length=1370
Score = 322 bits (174), Expect = 5e-87
Identities = 191/199 (96%), Gaps = 1/199 (1%)
Strand=Plus/Minus
Query 895 GCTGTTCGAGCGGTGGAGATAAGTAGACCTGGAGGAAGAGATGGTCCCCATAGTAGCTTT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 GCTGTTCGAGCGGTGGAGATAAGTAGACCTGGAGGAAGAGATGGTCCCCATAGTAGCTTT 158
Query 955 GTGGCGGAGGTGAATATGCTGGTGGTGGTGCTCGTGCTTGGTTTTGGTGATTGGTGTGAC 1014
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 157 GTGGCGGAGGTGAAGATGCTTGTGGTGGTGCTCGTGCTTGGTTTTGGTGATTGGTGCGAC 98
Query 1015 ATTCTAGGGCTGAGGTGGCGTGGCGTGAAGGCCGGGAAGGTTAATTGTGGCGCGAAGCAA 1074
||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 97 ATTCTAGGGCTGAAATGGCGTGGCGAGAAGGACGGGAAGGTTAATTGTGGCGCGAAGCAA 38
Query 1075 TTGGCCATGGCTGAGATTT 1093
|||||||||||||| ||||
Sbjct 37 TTGGCCATGGCTGA-ATTT 20
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55019797320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5