BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338681
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65340.1 | Symbols: CYP96A3 | cytochrome P450, family 96, su... 950 0.0
AT5G52320.1 | Symbols: CYP96A4 | cytochrome P450, family 96, su... 728 0.0
AT2G21910.1 | Symbols: CYP96A5 | cytochrome P450, family 96, su... 276 3e-73
> AT1G65340.1 | Symbols: CYP96A3 | cytochrome P450, family 96,
subfamily A, polypeptide 3 | chr1:24268135-24269646 REVERSE
LENGTH=1512
Length=1512
Score = 950 bits (514), Expect = 0.0
Identities = 554/574 (97%), Gaps = 0/574 (0%)
Strand=Plus/Plus
Query 198 GGCAAGAGACACAACAAGTTCAGCTCTCACTTGGTTCTTCTGGCTTCTGTCCAAGAACCC 257
||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 939 GGCAAGAGATACAACAAGTTCAGCACTCACTTGGTTCTTCTGGCTTATGTCCAAGAACCC 998
Query 258 TGAAGCAATGAACAAGATTCGACAAGAGGTTAACAAGAAGATGCCGAGGTTTGATCCCGC 317
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 999 TGAGGCAATAAACAAGATCCGACAAGAGGTTAACAAGAAGATGCCGAGGTTTGATCCCGC 1058
Query 318 AGATTTAGACAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGACGCTAAGGTTATACCC 377
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 AGATTTAGAAAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGACGCTAAGGTTATACCC 1118
Query 378 ACCAGTCCCATTTAACCACAAGTCACCGGCAAAGCCAGACGTGCTTCCAAGTGGGCATAA 437
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1119 ACCAGTTCCATTTAACCACAAGTCACCGGCAAAGCCAGACGTACTTCCAAGTGGGCATAG 1178
Query 438 AGTCGATGAGAATTGGAAGATTGTCATATCTATGTATGCATTAGGGAGGATGAAATCTGT 497
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 AGTAGATGAGAAATGGAAGATTGTCATATCTATGTATGCATTAGGGAGGATGAAATCTGT 1238
Query 498 TTGGGGAGATGACGCGGAAGATTTCAGACCAGAGAGATGGATTTCATACAGTGGAAGGTT 557
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1239 TTGGGGAGATGACGCAGAAGATTTCAGACCAGAGAGATGGATTTCAGACAGTGGAAGGTT 1298
Query 558 AAAACATGAACCTTCATATAAGTTCTTGGCGTTTAACGCTGGTCCAAGAGCTTGCTTGGG 617
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1299 AAAACATGAACCTTCATATAAGTTCTTGGCGTTTAACGCCGGTCCAAGAGCTTGCTTGGG 1358
Query 618 AAAAAAGTTAACGTTCTTGCAGATGAAGACAGTGGCTGCGGAAATCATACGAAACTATGA 677
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 GAAAAAGTTAACGTTCTTACAGATGAAGACAGTGGCTGCGGAAATCATACGAAACTATGA 1418
Query 678 CATCAAGGTCGTTGAAGGGCACAAAACCGAACCTGTTCCTTCTGTTCTTTTTCGCATGCA 737
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1419 CATCAAGGTCGTTGAAGGGCACAAAACCGAACCAGTTCCTTCTGTTCTTTTTCGTATGCA 1478
Query 738 ACATGGTCTCAAAGTTAATATCACTAAGATCTAG 771
|||||||||||||||||||||||||| |||||||
Sbjct 1479 ACATGGTCTCAAAGTTAATATCACTAGGATCTAG 1512
Score = 281 bits (152), Expect = 5e-75
Identities = 180/194 (93%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 1 ATGCCTAAGGTTGAGTTCGGTGACGCAGTAGATGGTGTCTCTGACAGAGTTTTCTATAGA 60
|||||||||||||||||||||||||| || |||||||| |||||| | ||||||||||||
Sbjct 601 ATGCCTAAGGTTGAGTTCGGTGACGCGGTCGATGGTGTTTCTGACGGGGTTTTCTATAGA 660
Query 61 CATGTCAAGCCGGTTTTCTTGTGGAGGCTCCAATATTGGATTGGTGTAGGACTCGAGAAA 120
||||| ||||||||||||||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 661 CATGTTAAGCCGGTTTTCTTGTGGAGGCTCCAATATTTGATTGGTGTAGGAGTAGAGAAA 720
Query 121 AGATTGAAAAGAGGTCTTGCGGTTTTTGATCAACTTCTCGAGAAGATCATAACGGCTAAA 180
||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||
Sbjct 721 AGATTGAAAAGAGGTCTAGCGGTATTCGATCAACTACTCGAGAAGATCATAACGGCTAAA 780
Query 181 AGAGAGGAGATCAA 194
|||||||||||||
Sbjct 781 CGAGAGGAGATCAA 794
> AT5G52320.1 | Symbols: CYP96A4 | cytochrome P450, family 96,
subfamily A, polypeptide 4 | chr5:21244978-21246682 REVERSE
LENGTH=1705
Length=1705
Score = 728 bits (394), Expect = 0.0
Identities = 519/579 (90%), Gaps = 10/579 (2%)
Strand=Plus/Plus
Query 198 GGCAAGAGACACAACAAGTTCAGCTCTCACTTGGTTCTTCTGGCTTCTGTCCAAGAACCC 257
||||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||
Sbjct 999 GGCAAGAGACACAACCAGCTCAGCTCTCACTTGGTTTTTCTGGCTTCTCTCTAAGAACCC 1058
Query 258 TGAAGCAATGAACAAGATTCGACAAGAGGTTAACAAGAAGATGCCGAGGTTTGATCCCGC 317
||||||||||| |||||| ||||||||| |||||||||||||||| | ||||||||| ||
Sbjct 1059 TGAAGCAATGACCAAGATCCGACAAGAGATTAACAAGAAGATGCCAAAGTTTGATCCGGC 1118
Query 318 AGATTTAGACAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGACGCTAAGGTTATACCC 377
||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 1119 AGATTTAGACAAGCTCGTGTACCTAGACGGTGCCGTGTGTGAGACGCTAAGGCTATACCC 1178
Query 378 ACCAGTCCCATTTAACCACAAGTCACCGGCAAAGCCAGACGTGCTTCCAAGTGGGCATAA 437
| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1179 ATCAGTCCCATTCAACCACAAGTCACCGGCAAAGCCAGACGTGCTTCCAAGTGGTCATAA 1238
Query 438 AGTCGATGAGAATTGGAAGATTGTCATATCTATGTATGCATTAGGGAGGATGAAATCTGT 497
||| ||| ||||||||| | | || || |||| ||| ||||||| ||||||||||||||
Sbjct 1239 AGTTGATAAGAATTGGAGGGTAGTAATCCCTATTTATTCATTAGGCAGGATGAAATCTGT 1298
Query 498 TTGGGGAGATGACGCGGAAGATTT-CAGACCAGAGAGATGGATTTCATACAGTGGAAGGT 556
||||||||||||||| |||||||| | |||||||||||||||||||| ||||||||| ||
Sbjct 1299 TTGGGGAGATGACGCAGAAGATTTTC-GACCAGAGAGATGGATTTCAGACAGTGGAATGT 1357
Query 557 TAAAACATGAACCTTCATATAAGTTCTTGGCGTTTAACGCTGGTCCAAGAGCTTGCTTGG 616
| | ||| || ||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1358 TGAGACAAGAGTCTTCATATAAGTTTTTGGCGTTTAACGCTGGTCCAAGAACTTGCTTGG 1417
Query 617 GAAAAA-AGTTAACGTTCTTGCAGATGAAGACAGTGGCTG-CGGAAATCAT-ACGAAACT 673
| |||| | ||||| |||||||||||||||||||| || | || ||||||| | ||||||
Sbjct 1418 GGAAAAGA-TTAACATTCTTGCAGATGAAGACAGTAGCGGTCG-AAATCATTA-GAAACT 1474
Query 674 ATGACATCAAGGTCGTTGAAGGGCACAAAACCGAA-CCTGTTCCTTCTGTTCTTTTTCGC 732
||||||| ||||||||||||||||||||| || || || |||||||| |||||| |||||
Sbjct 1475 ATGACATTAAGGTCGTTGAAGGGCACAAA-CCAAAACCAGTTCCTTCCGTTCTTCTTCGC 1533
Query 733 ATGCAACATGGTCTCAAAGTTAATATCACTAAGATCTAG 771
|||||||||||||||||||||| | |||||||||| |||
Sbjct 1534 ATGCAACATGGTCTCAAAGTTAGTGTCACTAAGATTTAG 1572
> AT2G21910.1 | Symbols: CYP96A5 | cytochrome P450, family 96,
subfamily A, polypeptide 5 | chr2:9341498-9343030 FORWARD LENGTH=1533
Length=1533
Score = 276 bits (149), Expect = 3e-73
Identities = 426/556 (77%), Gaps = 33/556 (6%)
Strand=Plus/Plus
Query 221 CTCTCACTTGGTTCTTCTGGCTTCTGTCCAAGAACCCTGAAGCAATGAACAAGATTCGAC 280
||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| || |
Sbjct 956 CTCTCACTTGGTTCTTCTGGCTTCTCTCCAAGAACCCTGAAGCTGTGACCAAGATCCGCC 1015
Query 281 AAGAGGT-TA-AC-AA--GA--A-GATGCC-G-A-G-GTTT-GATCCCG-CAGATTTAGA 326
||||| | | || || | | ||| || | | | |||| ||| | | || | ||| |
Sbjct 1016 AAGAGATCAACACAAATCTACCAGGAT-CCGGAATGAGTTTAGATGCAGACA-AGTTAAA 1073
Query 327 CAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGA-CGCTAAGGTTATACCCACCAGTCC 385
|||| | || ||| |||| ||||| ||||||| | | ||| | | ||| | ||| |||
Sbjct 1074 CAAGATGGTATATTTACATGGTGCATTGTGTGA-ATCACTACGCCTCTACGCGCCAATCC 1132
Query 386 CATT-TA-ACCACAAGTCACCGGCAAAGCCAGACGTGCTTCCAAGTGGGCATAAAGTCGA 443
| || | | | ||| | || ||||| ||| |||||||||||||| || | |||||
Sbjct 1133 CGTTCGAGA-GA-AAGACTCCCATAAAGCAAGATGTGCTTCCAAGTGGACACATGGTCGA 1190
Query 444 TGAGAATTGGAAGATTGTCATATCTATGTATGCATTAGGGAGGATGAAATCTGTTTGGGG 503
| | |||||||||||| | | ||| | |||||||| |||||||||| || || |||||
Sbjct 1191 TAAAAATTGGAAGATTTTGTTCTCTGTCTATGCATTGGGGAGGATGAGGTCCGTGTGGGG 1250
Query 504 AGATGACGCGGAAGATTTCAGACCAGAGAGATGGAT-T-TCATA-CAGTGGAAGG-TTAA 559
| | |||||| || |||| ||||||||||||||| | | | | | ||| ||| || |
Sbjct 1251 ACAGGACGCGTCTGAATTCAAACCAGAGAGATGGATCTCTGAGAGAAATGG-AGGCTTGA 1309
Query 560 AACATGAACCTTCATAT-AAGTTCTTGGCGTTTAACGCTGGTCCAAG-AGCTTGCTTGGG 617
|||||||||| || | | |||||||| | |||||| |||||||||| | | ||||||||
Sbjct 1310 AACATGAACCATC-TTTCAAGTTCTTCGTGTTTAATTCTGGTCCAAGAAAC-TGCTTGGG 1367
Query 618 AAAAAAGTTAACGTTCTTGCAGATGAAGACAGTGGCTGCGGAAATCATACGAAACTATGA 677
||||| ||| | |||||||||||||||||||| |||| || ||||||||||| |||||
Sbjct 1368 GAAAAATTTATCTTTCTTGCAGATGAAGACAGTAGCTGTTGAGATCATACGAAATTATGA 1427
Query 678 CATCAAGGTCGTTGAAGGGCACAAAACCGAACCTG-TTCCTTCTGTTCTTTTTCGCATGC 736
|||||||||||||||||||||||| | ||| || | ||| ||| | | ||| ||||
Sbjct 1428 CATCAAGGTCGTTGAAGGGCACAAGATCGAGCCAGCTTC-TTCCATAATCCTTCACATGA 1486
Query 737 AACATGGTCTCAAAGT 752
||||||| || |||||
Sbjct 1487 AACATGGCCTTAAAGT 1502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5