BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338690
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00680.1 | Symbols: PSBB | photosystem II reaction center pr... 2687 0.0
> ATCG00680.1 | Symbols: PSBB | photosystem II reaction center
protein B | chrC:72371-73897 FORWARD LENGTH=1527
Length=1527
Score = 2687 bits (1455), Expect = 0.0
Identities = 1503/1527 (98%), Gaps = 0/1527 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTTGTCTTGGTATCGTGTTCATACTGTTGTATTGAATGATCCCGGTCGTTTACTT 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTTGCCTTGGTATCGTGTTCATACTGTTGTATTGAATGATCCCGGTCGTTTACTT 60
Query 61 TCTGTTCATATAATGCATACTGCTCTGGTTGCTGGTTGGGCTGGTTCGATGGCTCTATAT 120
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GCTGTTCATATAATGCATACTGCTCTAGTTGCTGGTTGGGCTGGTTCGATGGCTCTATAT 120
Query 121 GAATTAGCAGTTTTTGATCCCTCCGACCCCGTTCTTGATCCAATGTGGAGACAAGGTATG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAATTAGCAGTTTTTGATCCCTCCGACCCCGTTCTTGATCCAATGTGGAGACAAGGTATG 180
Query 181 TTCGTTATACCTTTCATGACTCGTTTAGGAATAACCAATTCGTGGGGCGGTTGGAATATT 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 TTCGTTATACCTTTCATGACTCGTTTAGGAATAACCAATTCTTGGGGCGGTTGGAATATT 240
Query 241 ACAGGAGGGACTATAACGAATCCGGGTCTTTCGAGTTACGAAGGGGTAGCCGGAGCACAT 300
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 ACAGGGGGGACTATAACGAATCCGGGTCTTTGGAGTTACGAAGGGGTAGCCGGAGCACAT 300
Query 301 ATCGTGTTTTCTGGTTTGTGCTTCTTGGCAGCTATTTGGCATTGGGTATATTGGGATCTA 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATAGTGTTTTCTGGTTTGTGCTTCTTGGCAGCTATTTGGCATTGGGTATATTGGGATCTA 360
Query 361 GAAATTTTTTGTGATGAACGTACAGGAAAATCTTCTTTGGATTTGCCCAAGATTTTTGGA 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 GAAATTTTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCCAAGATTTTTGGA 420
Query 421 ATTCATTTATTTCTTTCAGGAGTGGCTTGCTTCGGTTTTGGCGCATTTCATGTAATAGGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 ATTCATTTATTTCTTTCAGGAGTGGCTTGCTTCGGTTTTGGCGCATTTCATGTAACAGGA 480
Query 481 TTATATGGTCCTGGAATATGGGTATCCGACCCTTATGGACTAACCGGAAAGGTCCAACCC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 TTATATGGTCCTGGAATATGGGTATCCGACCCTTATGGACTAACCGGAAAGGTACAACCC 540
Query 541 GTAAACCCGGCGTGGGGCGTGGAGGGTTTTGACCCTTTTGTTCCGGGAGGAATAGCCTCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTAAACCCGGCGTGGGGCGTGGAGGGTTTTGACCCTTTTGTTCCGGGAGGAATAGCCTCT 600
Query 601 CATCATATTGCAGCAGGGACGTTGGGTATATTAGCGGGCCTATTCCATCTTAGTGTTCGT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATCATATTGCAGCAGGGACGTTGGGTATATTAGCGGGCCTATTCCATCTTAGTGTTCGT 660
Query 661 CCGCCTCAACGTCTATACAAAGGATTACGTATGGGCAATATTGAAACCGTTCTTTCCAGT 720
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 CCGCCTCAACGTCTATACAAAGGATTACGTATGGGCAATATTGAAACCGTCCTTTCCAGT 720
Query 721 AGTATTGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGTATTGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCT 780
Query 781 GCAACTACTCCTATCGAATTATTTGGTCCTACTCGTTATCAATGGGATCAGGGATACTTT 840
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCAACTACTCCCATCGAATTATTTGGTCCTACTCGTTATCAATGGGATCAGGGATACTTT 840
Query 841 CAACAAGAAATATATCGAAGAGTTAGTGCTGGACTGGCTGAAAATCAAAGTTTATCAGAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CAACAAGAAATATATCGAAGAGTTAGTGCTGGACTGGCTGAAAATCAAAGTTTATCAGAA 900
Query 901 GCTTGGGCTAAAATTCCTGAAAAATTAGCTTTTTATGATTATATTGGTAATAATCCAGCA 960
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCTTGGGCGAAAATTCCTGAAAAATTAGCTTTTTATGATTATATTGGTAATAATCCAGCA 960
Query 961 AAAGGGGGGTTATTCCGAGCAGGTTCAATGGACAATGGGGATGGAATAGCTGTTGGATGG 1020
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAAGGGGGGTTATTCCGAGCGGGTTCAATGGACAATGGGGATGGAATAGCTGTTGGATGG 1020
Query 1021 TTGGGCCACCCCGTCTTTAGGAATAAAGAAGGGCGTGAACTTTTTGTACGCCGTATGCCT 1080
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 TTAGGCCACCCCGTCTTTAGAAATAAAGAAGGGCGTGAACTTTTTGTACGCCGCATGCCT 1080
Query 1081 ACTCTTTTTGAAACTTTTCCGGTTGTTTTGGTAGACGGAGACGGAATTGTTAGAGCCGAC 1140
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1081 ACTTTTTTTGAAACTTTTCCGGTAGTTTTGGTAGACGGAGACGGAATTGTTAGAGCTGAC 1140
Query 1141 GTCCCATTTAGAAGGGCAGAATCAAAATATAGTGTCGAACAAGTAGGTGTAACTGTTGAG 1200
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GTCCCGTTTAGAAGGGCAGAATCAAAATATAGTGTCGAACAAGTAGGTGTAACTGTTGAG 1200
Query 1201 TTTTATGGTGGTGAACTCAATGGAGTGAGTTATAGTGATCCCGCAACTGTGAAAAAATAT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TTTTATGGTGGTGAACTCAATGGAGTGAGTTATAGTGATCCCGCAACTGTGAAAAAATAT 1260
Query 1261 GCTAGACGGGCTCAATTGGGTGAGATTTTTGAATTAGATCGTGCGACTTTGAAATCCGAT 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1261 GCTAGACGGGCTCAATTGGGTGAGATTTTTGAATTAGATCGTGCGACTTTGAAATCTGAT 1320
Query 1321 GGTGTTTTTCATAGCAGCCCAAGAGGTTGGTTTACGTTTGGACATGCTTCGTTTGCTCTA 1380
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGTGTTTTTCGTAGCAGCCCAAGAGGTTGGTTTACGTTTGGACATGCTTCGTTTGCTCTA 1380
Query 1381 CTTTTCTTCTTTGGACACATTTGGCATGGTGCTAGAACCCTCTTCAGAGATGTTTTTGCT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CTTTTCTTCTTTGGACACATTTGGCATGGTGCTAGAACCCTCTTCAGAGATGTTTTTGCT 1440
Query 1441 GGTATTGATCCAGATTTGGATGCTCAAGTGGAATTTGGGGCATTCCAAAAACTTGGAGAT 1500
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1441 GGTATTGATCCAGATTTGGATGCTCAAGTGGAATTCGGGGCATTCCAAAAACTTGGAGAT 1500
Query 1501 CCAACTACAAAACGACAAGCAGTCTGA 1527
|||||||||||||||||||||||||||
Sbjct 1501 CCAACTACAAAACGACAAGCAGTCTGA 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75351018045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5