BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg338690 Length=1527 Score E Sequences producing significant alignments: (Bits) Value ATCG00680.1 | Symbols: PSBB | photosystem II reaction center pr... 2687 0.0 > ATCG00680.1 | Symbols: PSBB | photosystem II reaction center protein B | chrC:72371-73897 FORWARD LENGTH=1527 Length=1527 Score = 2687 bits (1455), Expect = 0.0 Identities = 1503/1527 (98%), Gaps = 0/1527 (0%) Strand=Plus/Plus Query 1 ATGGGTTTGTCTTGGTATCGTGTTCATACTGTTGTATTGAATGATCCCGGTCGTTTACTT 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGTTTGCCTTGGTATCGTGTTCATACTGTTGTATTGAATGATCCCGGTCGTTTACTT 60 Query 61 TCTGTTCATATAATGCATACTGCTCTGGTTGCTGGTTGGGCTGGTTCGATGGCTCTATAT 120 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 GCTGTTCATATAATGCATACTGCTCTAGTTGCTGGTTGGGCTGGTTCGATGGCTCTATAT 120 Query 121 GAATTAGCAGTTTTTGATCCCTCCGACCCCGTTCTTGATCCAATGTGGAGACAAGGTATG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GAATTAGCAGTTTTTGATCCCTCCGACCCCGTTCTTGATCCAATGTGGAGACAAGGTATG 180 Query 181 TTCGTTATACCTTTCATGACTCGTTTAGGAATAACCAATTCGTGGGGCGGTTGGAATATT 240 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 181 TTCGTTATACCTTTCATGACTCGTTTAGGAATAACCAATTCTTGGGGCGGTTGGAATATT 240 Query 241 ACAGGAGGGACTATAACGAATCCGGGTCTTTCGAGTTACGAAGGGGTAGCCGGAGCACAT 300 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 241 ACAGGGGGGACTATAACGAATCCGGGTCTTTGGAGTTACGAAGGGGTAGCCGGAGCACAT 300 Query 301 ATCGTGTTTTCTGGTTTGTGCTTCTTGGCAGCTATTTGGCATTGGGTATATTGGGATCTA 360 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATAGTGTTTTCTGGTTTGTGCTTCTTGGCAGCTATTTGGCATTGGGTATATTGGGATCTA 360 Query 361 GAAATTTTTTGTGATGAACGTACAGGAAAATCTTCTTTGGATTTGCCCAAGATTTTTGGA 420 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 361 GAAATTTTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCCAAGATTTTTGGA 420 Query 421 ATTCATTTATTTCTTTCAGGAGTGGCTTGCTTCGGTTTTGGCGCATTTCATGTAATAGGA 480 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 421 ATTCATTTATTTCTTTCAGGAGTGGCTTGCTTCGGTTTTGGCGCATTTCATGTAACAGGA 480 Query 481 TTATATGGTCCTGGAATATGGGTATCCGACCCTTATGGACTAACCGGAAAGGTCCAACCC 540 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 481 TTATATGGTCCTGGAATATGGGTATCCGACCCTTATGGACTAACCGGAAAGGTACAACCC 540 Query 541 GTAAACCCGGCGTGGGGCGTGGAGGGTTTTGACCCTTTTGTTCCGGGAGGAATAGCCTCT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GTAAACCCGGCGTGGGGCGTGGAGGGTTTTGACCCTTTTGTTCCGGGAGGAATAGCCTCT 600 Query 601 CATCATATTGCAGCAGGGACGTTGGGTATATTAGCGGGCCTATTCCATCTTAGTGTTCGT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CATCATATTGCAGCAGGGACGTTGGGTATATTAGCGGGCCTATTCCATCTTAGTGTTCGT 660 Query 661 CCGCCTCAACGTCTATACAAAGGATTACGTATGGGCAATATTGAAACCGTTCTTTCCAGT 720 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 661 CCGCCTCAACGTCTATACAAAGGATTACGTATGGGCAATATTGAAACCGTCCTTTCCAGT 720 Query 721 AGTATTGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AGTATTGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCT 780 Query 781 GCAACTACTCCTATCGAATTATTTGGTCCTACTCGTTATCAATGGGATCAGGGATACTTT 840 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GCAACTACTCCCATCGAATTATTTGGTCCTACTCGTTATCAATGGGATCAGGGATACTTT 840 Query 841 CAACAAGAAATATATCGAAGAGTTAGTGCTGGACTGGCTGAAAATCAAAGTTTATCAGAA 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CAACAAGAAATATATCGAAGAGTTAGTGCTGGACTGGCTGAAAATCAAAGTTTATCAGAA 900 Query 901 GCTTGGGCTAAAATTCCTGAAAAATTAGCTTTTTATGATTATATTGGTAATAATCCAGCA 960 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GCTTGGGCGAAAATTCCTGAAAAATTAGCTTTTTATGATTATATTGGTAATAATCCAGCA 960 Query 961 AAAGGGGGGTTATTCCGAGCAGGTTCAATGGACAATGGGGATGGAATAGCTGTTGGATGG 1020 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 961 AAAGGGGGGTTATTCCGAGCGGGTTCAATGGACAATGGGGATGGAATAGCTGTTGGATGG 1020 Query 1021 TTGGGCCACCCCGTCTTTAGGAATAAAGAAGGGCGTGAACTTTTTGTACGCCGTATGCCT 1080 || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1021 TTAGGCCACCCCGTCTTTAGAAATAAAGAAGGGCGTGAACTTTTTGTACGCCGCATGCCT 1080 Query 1081 ACTCTTTTTGAAACTTTTCCGGTTGTTTTGGTAGACGGAGACGGAATTGTTAGAGCCGAC 1140 ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1081 ACTTTTTTTGAAACTTTTCCGGTAGTTTTGGTAGACGGAGACGGAATTGTTAGAGCTGAC 1140 Query 1141 GTCCCATTTAGAAGGGCAGAATCAAAATATAGTGTCGAACAAGTAGGTGTAACTGTTGAG 1200 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 GTCCCGTTTAGAAGGGCAGAATCAAAATATAGTGTCGAACAAGTAGGTGTAACTGTTGAG 1200 Query 1201 TTTTATGGTGGTGAACTCAATGGAGTGAGTTATAGTGATCCCGCAACTGTGAAAAAATAT 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 TTTTATGGTGGTGAACTCAATGGAGTGAGTTATAGTGATCCCGCAACTGTGAAAAAATAT 1260 Query 1261 GCTAGACGGGCTCAATTGGGTGAGATTTTTGAATTAGATCGTGCGACTTTGAAATCCGAT 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1261 GCTAGACGGGCTCAATTGGGTGAGATTTTTGAATTAGATCGTGCGACTTTGAAATCTGAT 1320 Query 1321 GGTGTTTTTCATAGCAGCCCAAGAGGTTGGTTTACGTTTGGACATGCTTCGTTTGCTCTA 1380 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 GGTGTTTTTCGTAGCAGCCCAAGAGGTTGGTTTACGTTTGGACATGCTTCGTTTGCTCTA 1380 Query 1381 CTTTTCTTCTTTGGACACATTTGGCATGGTGCTAGAACCCTCTTCAGAGATGTTTTTGCT 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 CTTTTCTTCTTTGGACACATTTGGCATGGTGCTAGAACCCTCTTCAGAGATGTTTTTGCT 1440 Query 1441 GGTATTGATCCAGATTTGGATGCTCAAGTGGAATTTGGGGCATTCCAAAAACTTGGAGAT 1500 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1441 GGTATTGATCCAGATTTGGATGCTCAAGTGGAATTCGGGGCATTCCAAAAACTTGGAGAT 1500 Query 1501 CCAACTACAAAACGACAAGCAGTCTGA 1527 ||||||||||||||||||||||||||| Sbjct 1501 CCAACTACAAAACGACAAGCAGTCTGA 1527 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75351018045 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5