BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338701
Length=462
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35796.1 | Symbols: | pseudogene, similar to Putative prote... 196 1e-49
AT1G65190.1 | Symbols: | Protein kinase superfamily protein | ... 176 2e-43
AT1G65250.1 | Symbols: | Protein kinase superfamily protein | ... 163 1e-39
> AT5G35796.1 | Symbols: | pseudogene, similar to Putative protein
kinase, blastp match of 29% identity and 1.6e-16 P-value
to GP|21671940|gb|AAM74302.1|AC083944_20|AC083944 Putative
protein kinase {Oryza sativa (japonica cultivar-group)} | chr5:13968537-13969932
REVERSE LENGTH=1396
Length=1396
Score = 196 bits (106), Expect = 1e-49
Identities = 169/199 (85%), Gaps = 6/199 (3%)
Strand=Plus/Plus
Query 268 TCCGATATAGTGTCTGAGAGAGGAGCCAAGTTGTTAAAAGATCTGATCGAATTCGGCCAT 327
|||| || |||| | ||||||| |||||||||||| |||| || |||||||||||||||
Sbjct 66 TCCGGTAGAGTGGCCAAGAGAGGGGCCAAGTTGTTAGAAGAGCTCATCGAATTCGGCCAT 125
Query 328 GGCATATCCAATCCCATCAAATTCTTCTCAGCTGATGAGATCCTCAAAGCCACCAACTAT 387
|||| |||||||||||||||||||||||| | ||||||||||| ||| ||||||||| ||
Sbjct 126 GGCAAATCCAATCCCATCAAATTCTTCTCTGGTGATGAGATCCGCAATGCCACCAACAAT 185
Query 388 TTCAGCGACTCCAATCTTGTTTTTC---TATCACTTCCCTTCAACTGGTATTCAGGTAAG 444
|||||||||| |||||||||| || | | || || | |||||||||||||||||
Sbjct 186 TTCAGCGACT--AATCTTGTTTCTCGAAAAGAATTTTACTACCACTGGTATTCAGGTAAG 243
Query 445 AACGAGAACCATCCC-TGA 462
||||||||||||||| |||
Sbjct 244 AACGAGAACCATCCCATGA 262
> AT1G65190.1 | Symbols: | Protein kinase superfamily protein
| chr1:24215644-24217328 REVERSE LENGTH=1685
Length=1685
Score = 176 bits (95), Expect = 2e-43
Identities = 158/187 (84%), Gaps = 10/187 (5%)
Strand=Plus/Plus
Query 283 GAGAGAGGAGCCAAGTTGTTAAAAGATCTGATCGAAT-TCGGCCATGGCATATCCAATCC 341
||||||||||||||||||||| |||| || ||||||| | || |||||| |||||||||
Sbjct 159 GAGAGAGGAGCCAAGTTGTTAGAAGAGCTCATCGAATGT-TGCGATGGCAAATCCAATCC 217
Query 342 CATCAAATTCTTCTCAGCTGATGAGATCCTCAAAGCCACCAACTA-TTTCAGCGACTCCA 400
||||||||||||||| ||||||||||||| ||||||||||||| | ||||||| |||| |
Sbjct 218 CATCAAATTCTTCTCTGCTGATGAGATCCGCAAAGCCACCAAC-ATTTTCAGCCACTCTA 276
Query 401 ATCTTGTTTTTC---TATCACTTCCCT-TCAACTGGTATTCAGGTAAGAACGAGAACCAT 456
|||||||| || | | || || ||| |||||||||||||||||||||||||||
Sbjct 277 ATCTTGTTCATCAGGAAGAATTTTACTGCCAA-TGGTATTCAGGTAAGAACGAGAACCAT 335
Query 457 CCC-TGA 462
||| |||
Sbjct 336 CCCATGA 342
Score = 169 bits (91), Expect = 3e-41
Identities = 119/132 (90%), Gaps = 4/132 (3%)
Strand=Plus/Plus
Query 57 ATTGGAGAGAGGAGCCAAGTTGTTA-ACAGATCTGATCGAAT-TCGGCCATGGCATATCC 114
||||||||||||||||||||||||| | ||| || ||||||| | || |||||| ||||
Sbjct 155 ATTGGAGAGAGGAGCCAAGTTGTTAGA-AGAGCTCATCGAATGT-TGCGATGGCAAATCC 212
Query 115 AATCCCATCAAATTCTTCTCTGCTGATGAGATCCTCAAAGCCACCAACAATTTCAGCGAC 174
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 213 AATCCCATCAAATTCTTCTCTGCTGATGAGATCCGCAAAGCCACCAACATTTTCAGCCAC 272
Query 175 TCTAATCGTGTT 186
||||||| ||||
Sbjct 273 TCTAATCTTGTT 284
> AT1G65250.1 | Symbols: | Protein kinase superfamily protein
| chr1:24234338-24235808 FORWARD LENGTH=1471
Length=1471
Score = 163 bits (88), Expect = 1e-39
Identities = 116/129 (90%), Gaps = 4/129 (3%)
Strand=Plus/Plus
Query 61 GAGAGAGGAGCCAAGTTGTTA-ACAGATCTGATCGAAT-TCGGCCATGGCATATCCAATC 118
|||||||| |||||||||||| | ||| || ||||||| | || |||||| ||||||||
Sbjct 143 GAGAGAGGGGCCAAGTTGTTAGA-AGAGCTCATCGAATGT-TGCGATGGCAAATCCAATC 200
Query 119 CCATCAAATTCTTCTCTGCTGATGAGATCCTCAAAGCCACCAACAATTTCAGCGACTCTA 178
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 201 CCATCAAATTCTTCTCTGCTGATGAGATCCTCAAAGCCACCAACGATTTCAGCGACTCTA 260
Query 179 ATCGTGTTT 187
|| |||||
Sbjct 261 ATTTTGTTT 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22017274062
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5