BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338750
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18... 448 1e-124
AT4G30993.2 | Symbols: | Calcineurin-like metallo-phosphoester... 381 1e-104
AT1G50500.2 | Symbols: HIT1 | Membrane trafficking VPS53 family... 86.1 9e-16
> AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18036116-18040928
FORWARD LENGTH=3159
Length=3159
Score = 448 bits (242), Expect = 1e-124
Identities = 278/296 (94%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 1017 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCC 1076
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 1812 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCC 1871
Query 1077 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAAGGAGAGAACGCGGTCGCCATTAG 1136
|||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct 1872 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAG 1931
Query 1137 GATGAAAGGAATGGGAAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATACTG 1196
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1932 GATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTG 1991
Query 1197 GATGTCATTCGTTTCTCCACTCGGAGAGCCAATTCAAACGGAGTACCATATACCAAGATC 1256
|||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| |||||
Sbjct 1992 GATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATC 2051
Query 1257 TTTCATGAAGGAGGAGAAGAAGAAGAGCATGTTGGTGATTCTCGAGGAAGAGCCAG 1312
||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 2052 TTTCATGAAGGGGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG 2107
Score = 281 bits (152), Expect = 1e-74
Identities = 224/257 (87%), Gaps = 12/257 (5%)
Strand=Plus/Plus
Query 590 TTGTTAAGTCCGAGAAGACAAGCAAAGGTCTCAAATTTGAGATGTTTAGTGAAGATATTC 649
|||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1319 TTGTCAAGTCAGAGAAGACAAGCAAAGGTCTCAAATTTGAGATGTTTAGTGAAAATATTC 1378
Query 650 CTTCCATACTCGACGGTGATTCCTTGATTCTGGGGGAGCTTTATTACTTAACTAAGGACA 709
||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct 1379 CTTCCTTACTTGACGGTGATTCTTTGATTCCGGGGGAGCTTTATTACTTAACTAAAGACA 1438
Query 710 AAACAGATTATGCTTGGTATACCACAAGCATAAAGATTGAAGATGATGACATACCAGACC 769
|||||||||||||||| | | |||||||||| || |||||| | |||||||
Sbjct 1439 AAACAGATTATGCTTG-----C-----G--TAAAGATTGACGAAGATGACTTTCCAGACC 1486
Query 770 AGAAAGGTCAGAAGACGATACTGAGAGTAGCGGGTCTTGGTCACACATTAATCGTTTACG 829
| ||||||| |||||| ||||||||||||||| ||||||||||| || | ||||||||||
Sbjct 1487 AAAAAGGTCTGAAGACTATACTGAGAGTAGCGAGTCTTGGTCACGCACTGATCGTTTACG 1546
Query 830 TTAATGGAGAATACGCA 846
|||| ||||| ||||||
Sbjct 1547 TTAACGGAGAGTACGCA 1563
Score = 241 bits (130), Expect = 2e-62
Identities = 157/170 (92%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 850 AAC-TTAAGAACCAGAGATAATTGTATTTCAATTTTGGGTGTACTAACCGGATTACCAGA 908
||| |||| |||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1618 AACTTTAA-AACCGGAGATAATCGCATTTCAATTTTGGGTGTACTAACCGGATTACCAGA 1676
Query 909 CAGTGGATCATACATGGAACACACGTATGCCGGTCCACGTGGTGTTTCAATCATCGGTTT 968
||||||||||||||||||||||| || ||| |||||||||| | ||||||||||||||||
Sbjct 1677 CAGTGGATCATACATGGAACACAGGTTTGCTGGTCCACGTGCTATTTCAATCATCGGTTT 1736
Query 969 AAAGTCAGGAACGCGAGATTTGATAGAGAACAATGAATGGGGACATTTGG 1018
||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1737 AAAGTCAGGAACGCGAGATTTGACCGAGAACAATGAATGGGGACACTTGG 1786
> AT4G30993.2 | Symbols: | Calcineurin-like metallo-phosphoesterase
superfamily protein | chr4:15098067-15100558 FORWARD LENGTH=1615
Length=1615
Score = 381 bits (206), Expect = 1e-104
Identities = 275/307 (90%), Gaps = 10/307 (3%)
Strand=Plus/Plus
Query 98 GGTACAATAGAAAGAAAGGATCTGGATATTTCAGAGAGCGCATCACAATGCCTTTTGGTG 157
|||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 451 GGTACACTAGAATGAAAGGATCTGGATATTTCAGAGAGCACATCAAAATGCCTTTTGGTG 510
Query 158 GATCCTTGGATGTTGTTTTTGTAGACACTGGCTCA-TTACAGCAGGAAGTGCTCGGTGGA 216
||||||||||||||||||| ||||||||||||||| | | ||||||||||||| ||||||
Sbjct 511 GATCCTTGGATGTTGTTTTCGTAGACACTGGCTCACTCA-AGCAGGAAGTGCTTGGTGGA 569
Query 217 GCATTGAAGAG-CTCA-AGGATCAGTCAACTGAAAGAACTT-ACAAGGATTCTAAAAGCA 273
||| |||| | || | | |||||||||| |||||| || ||||||||||||||||||
Sbjct 570 GCAGTGAA-TGCCT-ATATGATCAGTCAATTGAAAG-GGTTGACAAGGATTCTAAAAGCA 626
Query 274 GCAGATGGAGACTGGCGTATTGTGGTTGGATCAGACCCGTTACTCGCCTATAATCTAACT 333
| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 627 GTAGACGGAGACTGGCGTATTGTGGTTGGATCAGACCCGTTACTCGCCTATACTCTAACT 686
Query 334 AAGGAAGCAGAGGAAGCC-AAGGGAATTGCAAGCACATTTGATCAAATCATGACCAAATA 392
|||||| |||||||| || ||| || | ||||| |||||| |||||||||||||||||||
Sbjct 687 AAGGAACCAGAGGAA-CCTAAGAGAGTGGCAAGGACATTTCATCAAATCATGACCAAATA 745
Query 393 TGGAGTG 399
|||||||
Sbjct 746 TGGAGTG 752
> AT1G50500.2 | Symbols: HIT1 | Membrane trafficking VPS53 family
protein | chr1:18707990-18715935 REVERSE LENGTH=2907
Length=2907
Score = 86.1 bits (46), Expect = 9e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1 ATGGATAAGTCAAGTGCTTTAGAGTATATCAACCAGATGTTCCCAACAG 49
||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 137 ATGGATAAGTCGAGTGCTTTAGAGTATATCAACCAGATGTTCCCAACAG 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628155915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5