BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg338762

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16100.1 | Symbols:  | Protein of unknown function (DUF789) ...   383    8e-106


> AT4G16100.1 | Symbols:  | Protein of unknown function (DUF789) 
| chr4:9105720-9108159 FORWARD LENGTH=1447
Length=1447

 Score =  383 bits (207),  Expect = 8e-106
 Identities = 257/281 (91%), Gaps = 3/281 (1%)
 Strand=Plus/Plus

Query  138   GGTACCTAATATACCAAATACCATTAGGTCAATCGTTACAAAACCTCGATGCTTGCTTTT  197
             |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  937   GGTACCCAATATACCGAATACCATTAGGTCAATCGTTACAAAACCTCGATGCTTGCTTTT  996

Query  198   TACCATTCCACTCTTTATCAACACGCTG-CGAGGTACAAGCAATGAGGAAGGTCAAAGCT  256
             || |||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct  997   TAACATTCCACTCGTTGTCAACACCCTGTCGAGGTACAAGCAATGAGGAAGGTCAAAGCT  1056

Query  257   CAAGCAAATCAGTTATACCGTCGAAGCTTCCACTT-CCCACTTTCGGTCTCGCATGCTAC  315
             |||||||||| |||  | || ||||||||||| || ||||||||||||||||||| ||||
Sbjct  1057  CAAGCAAATCGGTTGCATCGGCGAAGCTTCCA-TTGCCCACTTTCGGTCTCGCATCCTAC  1115

Query  316   AAGTTTAAATTGTCGGTATGGAGCCCAGAGAGTGACATGGACGAGAACCAGAGAGTCGGG  375
             ||||||||| |||| | ||||||||||||||||||| | |||||||||||||||||||||
Sbjct  1116  AAGTTTAAACTGTCAGAATGGAGCCCAGAGAGTGACGTAGACGAGAACCAGAGAGTCGGG  1175

Query  376   ACGCTGTTACGAACGGCTGAAGAGTGGCTCAAGCCGTTGAA  416
             |||||| ||||||| |||||||||||||||| || ||||||
Sbjct  1176  ACGCTGCTACGAACAGCTGAAGAGTGGCTCAGGCGGTTGAA  1216


 Score =  202 bits (109),  Expect = 2e-51
 Identities = 125/133 (94%), Gaps = 0/133 (0%)
 Strand=Plus/Plus

Query  6    CTCTTTGGAAGAGAAACCTTGCATTGGTTCATCGAGTGATGAGAGTGAGGCCAACAGTAA  65
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  719  CTCTTTGGAAGAGAAACCTTGCATTGGTTCATCGAGTGATGAGAGTGAGGCCAGCAGTAA  778

Query  66   CTCTCATGGTGACCTTTTCTTTGAATATCTTGAAGCTGCTATGCCATTTGGTCGTGAACC  125
            ||||| |||||| ||| ||||||| |||||||| | ||||||||||||||| ||||||||
Sbjct  779  CTCTCCTGGTGAACTTGTCTTTGAGTATCTTGAGGGTGCTATGCCATTTGGCCGTGAACC  838

Query  126  ATTGACCGACAAG  138
            |||||||||||||
Sbjct  839  ATTGACCGACAAG  851



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19906028604


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5