BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338769
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein h... 953 0.0
AT3G24315.1 | Symbols: AtSec20 | Sec20 family protein | chr3:88... 95.3 1e-18
> AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein
homolog 1 | chr3:8822979-8829694 REVERSE LENGTH=3730
Length=3730
Score = 953 bits (516), Expect = 0.0
Identities = 548/564 (97%), Gaps = 0/564 (0%)
Strand=Plus/Plus
Query 586 TGTATTGTGGAGGAAGTTCAGGGGCCAACACCAGCACGCTCTCGCAAAGGTCGATTTATT 645
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 721 TGTATTGTGGAGGAAGTTCAGGGGCCAACACCAGCACGCTCCCGTAAAGGTCGATTTATT 780
Query 646 TCAGGGCATGCACATCCAGGAAGTCCTTACGTATATGGGCTCGTTGGTGTTGACCACGAT 705
||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||
Sbjct 781 TCAGGGCATGCACATCCAGGAAGTCCTTATGTATATGGGCTTGTCGGTGTTGACCATGAT 840
Query 706 CTTGACTTTCCTGAGCCTATGCCTGTTGTTGGGATATCTCGGTCAGCAAGGGGGTACTGT 765
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 841 CTTGACTTTCCTGATCCTATGCCTGTTGTTGGGATATCTCGTTCAGCAAGGGGGTATTGT 900
Query 766 ATGATATCTATTTTCGAGACTATGAAAGCATATTCACTAGATGATGGTCTAACAGAAGAA 825
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 ATGATATCTATTTTCGAGACTATGAAAGCATATTCGCTAGATGATGGTCTAACAGAAGAA 960
Query 826 GCCTTAGTTACCAAGCTCCGCACCCGTCGCTGTCATCATCTTTTCTTACATGCATCGTTG 885
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 961 GCCTTAGTTACCAAGCTCCGCACTCGTCGCTGTCATCATCTTTTCTTACATGCATCGTTG 1020
Query 886 AGGCACAATGCATCAGGGACGTGCCGCTGGGGAGAGTTTGGGGAAGGGGGTTTACTCTGG 945
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1021 AGGCACAATGCATCAGGGACGTGCCGCTGGGGAGAGTTTGGGGAAGGGGGTCTACTCTGG 1080
Query 946 GGAGAATGTAGTGGCAGGAATTTTGAATGGTTTGAAGGAGATACTCTTTCCGAGCTCTTA 1005
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GGAGAATGCAGTAGCAGGAATTTTGAATGGTTTGAAGGAGATACTCTTTCCGAGCTCTTA 1140
Query 1006 TCAAGGGTCAAAGATGTTTATGGTCTTGATGATGAAGTTTCCTTTAGAAATGTCAATGTA 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TCAAGGGTCAAAGATGTTTATGGTCTTGATGATGAAGTTTCCTTTAGAAATGTCAATGTA 1200
Query 1066 CCTTCAAAAAATCGGCCACGTCCTTTGCATCTTGGAACGGCTACACAAATTGGTTCCTTA 1125
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1201 CCTTCAAAAAATCGGCCACGTCCGTTGCATCTTGGAACGGCTACACAAATTGGTGCCTTA 1260
Query 1126 CCTACTGAAGGAATACCTTGTTTG 1149
||||||||||||||||||||||||
Sbjct 1261 CCTACTGAAGGAATACCTTGTTTG 1284
Score = 379 bits (205), Expect = 3e-104
Identities = 217/223 (97%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 299 TAAAAGATGGAAACCTCAACTGGGAGATGTTGCAGTTTAAGTCAAGGTTTCCACGCGAAG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TAAAAGATGGAAACCTCAACTGGGAGATGTTGCAGTTTAAGTCAAGGTTTCCACGCGAAG 538
Query 359 TTTTGCTCTGCAGAGTAGGGGACTTTTATGAGGCTATTGGAATAGATGCTTGTATACTCG 418
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 539 TTTTGCTCTGCAGAGTAGGAGAATTTTATGAGGCTATTGGAATAGATGCTTGTATACTTG 598
Query 419 TTGAATATGCTGGTCTAAATCCCTTTGGTGGTCTTCGATCTGATAGTATTCCAAAGGCTG 478
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 599 TTGAATATGCTGGTCTCAATCCTTTTGGTGGTCTTCGATCAGATAGTATTCCAAAGGCTG 658
Query 479 GCTGCCCAATTATGAATCTTCGACAGACTTTGGATGACCTGAC 521
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GCTGCCCAATTATGAATCTTCGACAGACTTTGGATGACCTGAC 701
Score = 329 bits (178), Expect = 3e-89
Identities = 233/258 (90%), Gaps = 10/258 (4%)
Strand=Plus/Plus
Query 1 ATGCATTGGATTGCAACCAGAAACGCCGTCGTTTCAGTCCCTAAATGGCGATTCCTCTTC 60
|||||||||||||| ||||||||||||||||||||| |||| |||||||| ||| |||||
Sbjct 124 ATGCATTGGATTGCTACCAGAAACGCCGTCGTTTCATTCCCAAAATGGCGGTTCTTCTTC 183
Query 61 CGCTCCTCAT-T-TCAC--A--CTTCCCTCAAACCCTCCTCTCCAATTCTACTTAATAGA 114
|||||||||| | ||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct 184 CGCTCCTCATATCGCACTTACTCTTCCCTCAAACCCTCCTCCCCAATTCTACTTAATAGA 243
Query 115 AGGAACTCTGAAGGTATATAC-TGTCTTAGAGATCGAAAGTCTCTT-AAAGGAATCACAA 172
||| ||||||| || |||| | ||||| |||||| |||||||| || ||| |||||||||
Sbjct 244 AGGTACTCTGAGGGGATAT-CTTGTCTCAGAGATGGAAAGTCT-TTGAAAAGAATCACAA 301
Query 173 CGGCTTCTAAGAAAGTTAAGACGTCAAGTGATGTTCTCACTGACAAAGATCTCTCTCATT 232
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CGGCTTCTAAGAAAGTGAAGACGTCAAGTGATGTTCTCACTGACAAAGATCTCTCTCATT 361
Query 233 TGGTTTGGTGTAAGGAGA 250
|||||||||| |||||||
Sbjct 362 TGGTTTGGTGGAAGGAGA 379
> AT3G24315.1 | Symbols: AtSec20 | Sec20 family protein | chr3:8820455-8822820
REVERSE LENGTH=1186
Length=1186
Score = 95.3 bits (51), Expect = 1e-18
Identities = 51/51 (100%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1147 TTGAGAAGTGCTAATTTGCAAGCTAAGGATAACATGAGGAAAGCAGCTCAA 1197
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 TTGAGAAGTGCTAATTTGCAAGCTAAGGATAACATGAGGAAAGCAGCTCAA 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5